Array 1 30739-32094 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQBX01000010.1 Neisseria meningitidis strain M38016 M38016_CHA4474A7_cleaned_ctg_9963, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 30739 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 30805 36 100.0 30 .................................... GGCGGATGGCATACGGCGTGCCTTTTCGGT 30871 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 30937 36 100.0 30 .................................... CCGTCACTACACGAACTGGCGGACTTCTTG 31003 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA 31069 36 100.0 30 .................................... AATCAGACCGACTTTACAACGAAGGTTTGA 31135 36 100.0 30 .................................... CGACAACAAAGCCGTCTATGACCTGACCGA 31201 36 100.0 30 .................................... TTGGGAGGTGGAAAACCGAATCCTGCACGA 31267 36 100.0 30 .................................... AAGCAAATCATTTTCATAGTCAGCAGCTTC 31333 36 97.2 30 ......................T............. ACGTGAGTTTGTCTATGAGTTCGACGGCGT 31399 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 31465 36 100.0 30 .................................... CTTTCACTTCAGTAATGGCTTCGGCATATA 31531 36 100.0 30 .................................... TAAATTTTTGATTTTGATTTTTTCTATACA 31597 36 100.0 30 .................................... GTGGGAGTTCGTCTATGAATTCGATGGCGT 31663 36 100.0 30 .................................... TTTGCTGCCCGACAATGCGCGTCCGCAGAT 31729 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 31795 36 100.0 30 .................................... TTCCAAAGTTTTAATTTATATTATTTTAGT 31861 36 97.2 30 ............................A....... CAGAAGATGATAACTGTGCTGGGGGTGCGT 31927 36 100.0 30 .................................... ACGCAATAACGGCGAGTTTACGCATCAATG 31993 36 100.0 30 .................................... TAACGATTGAAAGTGAGTATGTATTAAGTA 32059 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.5 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGATATTGTGCTAGAAGAAACAGAAAACGAGCAGAACAATGATTTCAGGCTGCCTGAAAATTTAGAACACTTTGATATTCAAATAGAAAATGTTTCTTTTCGCTATGCTGAAAATGAACCATACATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTGTCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //