Array 1 84993-81974 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDGX01000019.1 Corynebacterium sp. LK30 contig06, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 84992 29 96.6 32 ............................G CGTCGAAGAAGCTGACGAAGAAAACTATCGGC 84931 29 100.0 32 ............................. AACTCCGCCTGCTCACGCAACGCAGCCTCATC 84870 29 96.6 32 ............................G GACGGTGACGGCCAGACTGACGCTTACGCGTG 84809 29 100.0 32 ............................. AGACAAGAATTATCCTCCTATCGTCCTAGGCC 84748 29 96.6 32 ............................T TTGGCGGAGTTGCAGGCGTTGGATGAGGCTGC 84687 29 100.0 32 ............................. GACAGGCCAAGCTTGCCGACAGCACCGGACAC 84626 29 100.0 32 ............................. GGTTCTTGATGTTGTCGAAATTACCGGTCAGC 84565 29 100.0 32 ............................. ATTGTCATCCTCGCGTGGAACGGTATCCAGGC 84504 29 100.0 32 ............................. TTCGCGAGGTTCTCAACCGAGGACTCCCACAG 84443 29 100.0 32 ............................. CGAGTTCCACTTCTCAGAGAACCACTCCGGGA 84382 29 96.6 32 ............................G TCCTGGGTGCGTGGCCTGAACTACAAGGACTG 84321 29 96.6 32 ............................G ACGGCTACCCCACAGGCTGACGATGACGCCAC 84260 29 96.6 32 ............................G GATGTTGGTTTGAAGCCGACGGATGGCACTGT 84199 29 96.6 32 ............................T CACCAGAATCTTGTCCAGCCCAATCAGGTGAA 84138 29 96.6 32 ............................T ACGGGGTTGAAGCTCCGTGGTCAGGTCTCCGG 84077 29 96.6 32 ............................G GTGATGAGGTGGTGTAGGTCAATATCGACAGC 84016 29 96.6 32 ............................T GACACCGTTCTTCGCAACCCCGGCGAGCTTCG 83955 29 96.6 32 ............................G CAGCAGTCACGCCATTAAAACCACCAGCAGCA 83894 29 96.6 32 ............................G GACGCGTACACCGCCTACATCGAGCCGGTGTT 83833 29 96.6 32 ............................T TCTCGTACGGTGCGCCCTGCAGTGAACGCTCC 83772 29 96.6 32 ............................G CGCTATTTGAGATAAGCGGCGCCCCAACCGCC 83711 29 100.0 32 ............................. ATCGTTGAGAATCGCGGTAGAGCGGCCACGCT 83650 29 100.0 32 ............................. GTGGAGATGGGCGGTGGGCCGGGTGGCGGCAA 83589 29 96.6 32 ............................T CTGCCCCCTGGGAAGATTCACAAACGCCCCCA 83528 29 100.0 32 ............................. ATGAGCTGTGGTTCTACGGCAAGGGCATCACG 83467 29 100.0 32 ............................. AGACCACGACAAATTGAGCTCCACGCACTGCG 83406 29 96.6 32 ............................G AAGGTGAATCATGACCATCCTTTACGGGACTT 83345 29 100.0 32 ............................. CCGATGGACTGGGGCGACTGCTCGTACACTGC 83284 29 96.6 32 ............................G GTGTTTGACCTTGATTCGGAAACTCCGACTCC 83223 29 100.0 32 ............................. TGCTGAAGCAGCGCGAAGAAGCCACCGGAGCC 83162 29 96.6 32 ............................T GAGTACCGGAAGGGCTGGCTGGGCACGAAACC 83101 29 96.6 32 ............................T CGTACTTCTCGCCCAGCGGGACCTTCTTGGTG 83040 29 100.0 32 ............................. TTGTCCGCATCGTCGATGCCCAGCAGCTCCAG 82979 29 100.0 32 ............................. CGTGCTGACGGAACAGGTTCACAAACAGCGAC 82918 29 96.6 32 ............................G GCTGTGCAGGCAGGTTTGGCGCCGGGTAATTC 82857 29 93.1 32 .......G....................T GAACTGCTCGTCGAGCTCGGAGAGAGCGTCGG 82796 29 100.0 32 ............................. ATCGGTTCGGCTGTCGCTCAGGCTTCCGCAGC 82735 29 96.6 32 ............................G AATGTCACCGGCGCGATTAAGGACGCGACCGG 82674 29 100.0 32 ............................. AGGTCAAAAGTCAGGGCAGACTCCACGCCCTC 82613 29 100.0 32 ............................. AGTACGCGGCCGAATGATGGCAGCGAAACTAG 82552 29 96.6 32 ............................T CCTGCGTTGGGGAAGCGCATGTCGTTTGAGAC 82491 29 96.6 33 ............................A CACCTACCCGGCTTCTGAGGCTGACTACGGCTC 82429 29 96.6 32 ............................G TGGGAAGAAGTCTGGTCGTGGCTCGGCGGCGT 82368 29 96.6 32 ............................T AACCCCAGGCACTGTGAGGGTGGTGAGCCCGT 82307 29 96.6 32 ............................G GCTAAACCGCAACGAACCCTCAGGGCGACTGC 82246 29 96.6 32 ............................G CCCTCAAGGGTGGACTGTTCAGCCATTGCTGT 82185 29 100.0 32 ............................. ACGAATCGGGTTGACCTCCTGCCACGGGATGT 82124 29 96.6 32 ............................G GTGCCCAGCATCTCCTGGTAGTTGGCGATATC 82063 29 100.0 32 ............................. GAAAACGCGAAGGTCTGGGTGTGGTCGTTCTG 82002 29 86.2 0 .....................TA....AA | ========== ====== ====== ====== ============================= ================================= ================== 50 29 97.7 32 GTTTTCCCCGCGCGAGCGGGGATGTTCCC # Left flank : AAACGAGGAATTCGGCGAAGTTATCGAGTTGTGGGATTACAGCCGTGGCGCGATTAGAGGTGGTACAAATTACTCCTCCGGAGAACCGCCATGGTGACAATAGTTTTGACGAGCTGCCCTGCCGGGTTGCGGGGCCATTTAACTCGATGGCTTGAGGAAATCTCCCCAGGTGTATTTGTTGGGAAAGTTAACTCTCGTCTCCGTGACATCTTGTGGGGACTCGTCATCGAAATGGTTGGCAATGGTCGTGCAATTATGGTTTATCCGGATCGGAATGCCGAACAAGGGTATGCCTACAAGGTGCATCGCCACGATTGGGAGGTTGTTGATGTTGAGGGGCTGTCCCTGATTCGGCGTCCGTTCAAAAACAGGACTAAAGGTGATGTCGGATTACAACCGGGGTGGTCAAATCCAGCCAAGCGGCGTCGTGCTCGACGTGCTCGTCGAGCTGAGTGATATAAAATTCTTCACTGGGAACTGAAATCTGCTGGTTATTAAGT # Right flank : GTTTGATTATGAGGGGATACTATCCCCATAGAAATACTCAGGAGGGTAAACGCATGACAAGGTATTGGGATCACAGCGGCAGTATCTACAAAGATGACGGTCAGGAAGACTCGTTCGTCCCAATCACTGAGCAGCAGGCACTCGCTGAGATTGCAGAAAAGCAGAAGCTGCATGAGGAATGGGCGAAGAGCAAAATCAAGGAACTGCGCGCGAAAATGGAAGCTGCCGCAGCGCAGGCCAGGCAGGCCACCGAACAGCCGTATCCAACTTTTTCTCAGCAATCCGCCGCATACCGTGAGGGTGCACAGGCCTACAACGAGGGCAAATCTTGGCGCGATAACCCGCATGCCCCCGAGTCAGGTCTAGCAGCCCCGTGGCGCATGGGCTTCAATACCCGCAAGCAGCAGGTAGCGGAGATCAGGGCACAGCGAGCCGCCGCTGCGCGGCAGGAAAACTAGGCCCTGGCCGCAAAAACGCTCAGCCAAAGCTCTAAAATTCCC # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCGCGAGCGGGGATGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 119386-120938 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDGX01000022.1 Corynebacterium sp. LK30 contig08, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 119386 29 100.0 32 ............................. TCGTCACCCTCAACCACAAAGGTCACGTATTC 119447 29 100.0 32 ............................. TATCAGCCATGCCATCAACACGCGCCGACAAC 119508 29 100.0 32 ............................. CAGCAGGCGGACGCGGCCAAGCAATATCCGCC 119569 29 100.0 31 ............................. ATGCTTTCCACCGCTATCCAGTGGTGGGTGA 119629 29 100.0 32 ............................. GAGATGAACGCCTACCTGGACTACAACCCAGA 119690 29 100.0 32 ............................. CAGGTGATTGTCCGGAACCCTGCGGCAGGTGT 119751 29 100.0 32 ............................. GGATGCGGGACGGGGCTGGGCTACTACCCCTG 119812 29 100.0 32 ............................. TCAGGTGATGTACCTGGAGGTAACGCGCGCCG 119873 29 100.0 32 ............................. TGTTCGAATTCGTACTTTTCGGTTGTGATTGT 119934 29 100.0 32 ............................. TGTTCGAATTCGTACTTTTCGGTTGTGATTGT 119995 29 100.0 32 ............................. TATAGCACTCACGGTGAAACAGGTCGCCGAGC 120056 29 100.0 32 ............................. ATCACCAGCGCCATGAAGATAATCGTGCCGAA 120117 29 100.0 32 ............................. ACCTGTAGGGACATGCCCGGCCCTGGGGCGCG 120178 29 100.0 32 ............................. GGTGGTGTACGGGTAGTAGTCCCCATCATTGA 120239 29 100.0 32 ............................. CAGCACCCCGTGTTCACACGAACCCGCATCGC 120300 29 100.0 32 ............................. AGAATGAAATCACCACGCTTAGCCTCAAACTT 120361 29 100.0 32 ............................. CTCAGTCAGGAAGACCTCGCAATGCCAAGCGC 120422 29 100.0 32 ............................. ATTGTCATGGGTGTGATTCAGTCCGCGATGGA 120483 29 100.0 32 ............................. TTGACCGACCGGGCTGTGTCGGCTGCTGACCG 120544 29 100.0 32 ............................. ATTCACCCGCACCACATTCGGAGTCGGCCCCG 120605 29 96.6 32 ............................T GAGAGCGAACTAGAAGCAACTCATGATGAGGA 120666 29 100.0 32 ............................. ACTTCTTCCTCGGCGACCGTGTAGGCGGGGAA 120727 29 96.6 32 ............C................ CATGAGATGGTCTGCCACATGAGATACTTCCT 120788 29 96.6 32 ............C................ ATTGAGCAGTTGGGCGCAGGTGCGTCGATTCG 120849 29 93.1 32 ............C.....C.......... TGGCAAGCCTTCCTCCGCGACCACGAGCAGGA 120910 29 86.2 0 ...........GC...........G...T | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.8 32 CTCTTCTCCGCATACGCGGAGGTATTTCC # Left flank : TTCATCGAAGGGGCATGTTGAAAGAGATGATTGGAGTATTAATGGAGATTCTCGAACCGTATCTGCCAGAAAGAGACGATGACCGGTTGATTGCGGGACGGGGCGACGAAGTGGCTGGGCATACACAGTATGGAAATCGACCCCAGTAACAGTAGGTGCGTCCCTTATGTTTTTGGTACTTACTGCATCTAATTTGCCGGAACATCTCCGAGGGTATCTAACTCGTTTCTTAGTTGAAGTTGATACTGGAGTTTTTGTCGGTAACGTGTCGAGACGCGTTCGTGATAATCTATGGGGCCGGTGTAGCCGAGCTATAGGGGAGGGACGTCTAACGATGATTAATAATGATCCCACCCGAGAGCAGGGGTTCGCCGTAAATACGATGGGGAGTAATCGCCGAGTGATTCAGGACTTCGATGGTCTGTTGCTGCCTGTGACCTTATCTGCCGAAACTCGCGGACTTGAAGAAACTTCTTCGTAAAAACCGCAGGTCGGGAACT # Right flank : TCAGGTACCAAGCGTCAAGCTCGCCACCTACCTTGTGGCCCCAGCCTCAACCCCCTACCGCTTCCGCAGCACCAACACCAGGTTCGACACCGCGAACTCGCGCAGCACCGGCACGTGCACCATCCACCAGGCCCACCACGGGTGGTAGCGCGGGAAAGCGGCCAGCAGCTCGCAGTCGCCGGCCTCCGCGGCAGCGCGCGCCCACTTCAATCCTTCACCGCAACCGACCTTGAACAGGGACTCGCCAAAATAGTTCTTCGGTCGCTTGCCGTGCTTCTTCTCATACATGCGCCGCGCGCGGTCGCCACCCAGGTAATGCGTCATCCCCATCTCGTGGCCGCCGAACGGGCCGTACCAAATGGTGTACGAGTAAACGACCAGTCCGCCCGGCTTGGTTACACGCAGCATTTCCTCGCCCATCGTCCATGGCTCGGGCACGTGCTCGGCGACATTCGACGAGTACGTCAGGTCAAACGCGTCATCGCGAAACGGCAGTTCCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCATACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //