Array 1 29231-29930 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIPUM010000015.1 Lentilactobacillus otakiensis strain cek-R3 PairedContig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29231 29 96.6 32 ............................C TTATGGTGGAAATGCAGTTAAAGAATTTCAAG 29292 29 100.0 32 ............................. ACAAGGATAGTTGATACTTAGACAATGGTGTA 29353 29 100.0 32 ............................. TGGTAATCAGCGTCAATTTTTGACTTGCTTCA 29414 29 100.0 32 ............................. TTCTCGAACGGACTAGCAAAATGTATCAAACG 29475 29 100.0 32 ............................. CATTCTTTATGAGGTATCTGCTGTTCGTTTCC 29536 29 100.0 32 ............................. ACCATTACCATAGACATCAGATTGAATGGTGA 29597 29 100.0 32 ............................. CCATTTCAAAGCTGATTTACCAAGCTCGGCTT 29658 29 96.6 32 ............................C AAGTCTTTGAGTTCCTGTTTCTGCGCGTCAGT 29719 29 96.6 32 ............................C CATAGTTAGCGTGTAATTGATTCTTCTCAATT 29780 29 100.0 32 ............................. AACTACAACAATTCCCATGCTTGGATTGTGGT 29841 29 89.7 32 .................A.....A....G TCCTTTAGGACTACTTCTCCAGTGACTTCTTT 29902 29 75.9 0 ............C..........CTAAAA | ========== ====== ====== ====== ============================= ================================ ================== 12 29 96.3 32 GTATTCCCCACGTATGTGGGGGTGATCCT # Left flank : ACCAAGAACAGTATTATTTCAATTGGTGCTGCTAAATATCTCGCGAACGATAATGTCGTTGAATTTCAACAGCTTGTTAAAATTGATGAGGCTGTACCCGATAAAATAACGGAGTTGACAGGAATTTCATCAGCAATCCTCTCCGATCAAGGCGTGAGCTTAGAAGCGTCTTTATTAGCTTTACGAGATTTTATAGAAGGACTTCCAGTTGTTGGCTATAATTTACATTTTGATCAATCATTTCTTTCTATGGCTTTTAGCAAGTTAGGGCAAAATGATTTAAATAATCAGATGATTGATTTGATGCCAGTTGTGAAGAAGGCTGATCAATTTCTGGATAATTATCGTTTGGAAACGGTGCTCAGAGAATATCATGTTAACAATTCATCTCCACATCATGCGTTGTCAGATGCGAAAGCGACCTTGGAATTGGCGTTGAAGTTGATAAAAAACGGGCATTTGTCGATTTGAAAATGGCTTTAGGACGCTGTTTGTTTAGT # Right flank : AACTCTTTCGTGACTTATTTAATATGAACAGGATGTAACCTTTTGCTATTGTAAAAATTGTTTGCACAACACAAATCGATTCATCATACTTAACTTAATAATAACTGATAGGAGAATAAACATGGCAACATCAAAACAAATCTTAGTTGAGAGCTTACAAACATTCGCAAAAGAAGTTGGCGGGAAAGATTCCAGAGGTAATGAATTTTTTGTTACTCGGGCGGCTGTAACTGATGAACTAACGCCTGATGGTAAAAATTATGCCTTCATCTCGTTAATCAGAAACGATCAGCCAGTTAGTGGTCCATATTCTGGTCTATCCATGAAAGTAAACCCGGGTATCAATCACTATCGAATTTCGCTAGATATTGGAAGTGAGGGATTTGGAGATGATTACCAGCTGGCAGCAACACCAGGTACAAGAAGAAGGTTCCTTGAACTGCAGAGCACAATCAATGAGTATGCAAAGGAAAATGGCAAGAAGATTTCATGTTTCTGTG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 69606-68646 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIPUM010000018.1 Lentilactobacillus otakiensis strain cek-R3 PairedContig_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 69605 36 100.0 30 .................................... GAGTACAAAAGGCTGTGGAACAATGCTTCA 69539 36 100.0 30 .................................... TGTATCATGGTTATCAAGCCGCTTACGCAG 69473 36 97.2 30 ..................................T. TCTGATAGTGTATGAGTTCTGAGCCCGCAG 69407 36 100.0 30 .................................... ATGGGTATTGACAACCAAGATTTTATTAAC 69341 36 97.2 30 ....................T............... TACCGCAACCAATAAGGATCGTTGCCTTTC 69275 36 100.0 30 .................................... ATTGGTTCCACTTGCGTAAGTCGTCGATAG 69209 36 100.0 30 .................................... TTGGCGAAATGATCATGTCAACCACACCAG 69143 36 100.0 30 .................................... AGCTTAAAGCAGATGAACAAGCAATCGCAG 69077 36 100.0 30 .................................... GCAAGCTGGAAAGATATGATACGTAAGCAG 69011 36 100.0 30 .................................... GCCGATTCAAAAAATAGAGCAGGCGTTTCG 68945 36 100.0 30 .................................... CCATAAGTGATCTAATAACTTTCATTCCTG 68879 36 100.0 30 .................................... GCAAAGGTTCAGGCTAAGAAACCACCCAAC 68813 36 100.0 30 .................................... TGTAACCACCGTGGCTCCAAACAGAGCCTT 68747 36 97.2 30 .................................T.. TGAGCACGAAAAATGGCACAAAAAGATTGG 68681 36 75.0 0 ..........A..C.......G.......C.TTTTT | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 97.8 30 GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Left flank : AAAACCAACAGTTCTAACCTGCCGTTTTCCTACATTTTACGGGTGCCTTTTACAACTTGTGTCACGTTGCCTTC # Right flank : TCTAAAGTAACCTCGCTAAATCGTCTCGGCTGTAACACAAATAAATGAGCTTCCAGGTCAGCAAATCACTAACCTGAAAGCTCATTTATTTGTATCTATTTAGCTAATTCCTTGGCCAACGCCAATCCCATTTTCTGAGCAGTTTGAGCAGTTGGATGAATCTCGTGATCTCGTAAAGTATAATTCTTGTTTTGACTGGTAATAATCCCAGGCGCAAATTGATTGAAGTTAATCACAGTGGCACCCAGTGACTTGTACAGCTTGGCTTCCGCAACCCGTAAGTCTTTGAAGGTGTAGCCATACATGTCGCTCATGTTCTCGCGGCTCAGGCCATTAGCATCGTAACGCGAAATTGGCAGCACCCCATAAATCTTAGCGTTTGGATTGAGCTTTTGAATCATGCGAATGTTATAACGCAGATTGTGCATCACATTCTTCAAACTACCGGAACCCGAGTAATTGGTGTAATCATTGGTACCGATGTGGACAAAAATCATGTT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 67283-69429 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIPUM010000022.1 Lentilactobacillus otakiensis strain cek-R3 PairedContig_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 67283 36 100.0 30 .................................... GTTCGTTCATTTGAATCATCCTTTCGTCCT 67349 36 100.0 30 .................................... AAAGGCATCAGTTAGGTGCAAAGAGCTTCA 67415 36 100.0 30 .................................... ATAGGAGGTGTAGGTAATGGCCGTAATTAA 67481 36 100.0 30 .................................... GTGGTGATGCTACCGGACTACTGGCCGCCG 67547 36 100.0 30 .................................... TCACCAAAATGATTATCGCTGTCTTTAGTT 67613 36 100.0 30 .................................... TCATTATCATTACGTCCAACGTATATAAGT 67679 36 100.0 30 .................................... CAAAGAGCGACCAGGAATTGATCGATCAAG 67745 36 100.0 30 .................................... ATTGACCTGAAACATCTGGTAATACAGCGT 67811 36 100.0 30 .................................... ACGCCTAAACACCGACGTGTCAACGTTTGT 67877 36 100.0 30 .................................... GTGGATTTGAACTGCCAGATTATTTGGCAA 67943 36 100.0 30 .................................... TAATTGCTTTACCAATCTTACCAATTGCAT 68009 36 100.0 30 .................................... TTCGATCCGATGGAAATGTTCATACTCTTT 68075 36 100.0 30 .................................... ATATCGATAACTTTTTGGAACAGAAGAAGA 68141 36 100.0 30 .................................... CCGCGTGGCTCATAGAATACGGAAATCCAC 68207 36 100.0 30 .................................... TGCAAAGATCTTTGCATTCCCAACTAGTTA 68273 36 100.0 30 .................................... ACTGGACGCAGAAATCCATGGATATGCGAA 68339 36 100.0 30 .................................... TTAAAGTAATTTGAATTCCGTGATTGAGTT 68405 36 100.0 30 .................................... AACTGTTTGAAGGGGAGTTCCATAAATCCT 68471 36 100.0 30 .................................... TAATTCCTGTCGATATTGCACGGTTCAGTC 68537 36 100.0 30 .................................... CAATTTTTAGACTTGGTATCATCCGGAGCA 68603 36 100.0 30 .................................... GATTCTGGCATCAAAGCCACTTCGTCAAAG 68669 36 100.0 30 .................................... AGAGCCTTGTGCCGTGGGATGAATCACTTC 68735 36 100.0 30 .................................... AAACCGTTACGCCGTTTGACTTATTACCAT 68801 36 100.0 30 .................................... CATAGAATTTTGACAAATGTTGTTTCATAA 68867 36 100.0 30 .................................... AGAACAACTGCGATATTTTCACTACTTCAT 68933 36 100.0 30 .................................... GACACCTTGACCCAACAACAAGCGGTTCTT 68999 36 100.0 29 .................................... TAACGCTTGGTTATAACAATCGTGCAATG 69064 36 100.0 30 .................................... AATCGTCGCAGTTTTACCGCAGAATGATCG 69130 36 100.0 30 .................................... TAAATAATTTTGTTTGCGTAATACTTTGGA 69196 36 100.0 30 .................................... ATCTCGCCGGAATCAATGCCAACGTATTGG 69262 36 100.0 30 .................................... TATAAATGTGGTGGTAAGGTTAGGACGGTT 69328 36 100.0 30 .................................... AAGCATTCGACAATATGATGGCCAACTTTG 69394 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 33 36 100.0 30 GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Left flank : CAGTGATGGTGTGAGTGAAAAGTATAGCCCTGGTATTTATAAGCAGTTAGAAGCTGTATTGACTGACGATCAACGTAAGTCAATTACTGACATCAATAGCCAACTGTATACTCTTGTGCAGCAATGCTTATTCATGATTGATCTCCCTTTGGAAGTTACCTATGATTGGGATTTAAAGAAGCTGTTCAAATACTGCAAAATTCACTTTAATGTCGATACCATGCAAAACCCGTATGCTATAATTGAATCAATTATTAAAATTCACTTAGAGTGTGGATTGAAGTCTGCAGTTGGATTAACTAATGTCGCTCATTATCTTAACCAGCAGCAATTAACTGACTTGTCCAAACTCACAAGTTCCACGGGGATCTCGATATTATTAGTAGAATTCACAGATATGAAGTCACAGGAGCTTTATACCAATTGCAATTTCTACTACATTGACGAGGACTTTGTTGATTGGCATGCATAATACATTAAAATCCGGTTATAAAAAATCG # Right flank : CCTTAAAGGACTTGTGTGTCAAGGGCAGTTTAAAAATGTAGGTTTTCGGCAGAAAGAAATGTAGGTTTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //