Array 1 1701925-1692322 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020362.1 Sulfolobus acidocaldarius strain Y14 16-22 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 1701924 24 100.0 35 ........................ AGGTAAGTTACGGGGTTTATTTATGGACTTTACTC 1701865 24 100.0 35 ........................ ATTATACTACCGAGGGATTGGGCGGTGTCGGGGAA 1701806 24 100.0 34 ........................ TAAGGACGTATTTTACGACGAAAAAGGACTTTAT 1701748 24 100.0 34 ........................ CATATAGAACCGCCAGTAAGGCCAATCGAAAACC 1701690 24 100.0 35 ........................ TTTCCGGTAGCCGAACCCGTAGTCACGGTTACACT 1701631 24 100.0 38 ........................ TAAAAACCCCATAGGGTTTCGCTTTGAGCCGAAAGCGA 1701569 24 100.0 36 ........................ GGACAAACGAAGCTGAGGAACTCGAGGACTGGCATC 1701509 24 100.0 36 ........................ GTTGAGACTAAGCCCCTTTTTCACCACCTCTGGAAA 1701449 24 100.0 37 ........................ AAGGAATACTTAACAATACTTTACGACTTCATGACTA 1701388 24 100.0 37 ........................ GCGAGCTGACCCCGCCTTATACTTTACTATACTTTAA 1701327 24 100.0 35 ........................ TTCTCGCTTTCATTTCATTCAGAATGGGGGTTTTT 1701268 24 100.0 37 ........................ TGAGTGAGGGGAGTCCTCCTGACTATTTCCCTCCCGT 1701207 24 100.0 37 ........................ AAGGAGTGATAATCAACTCACCGACGGGGACGGGAAA 1701146 24 100.0 36 ........................ TATCATGATTAAACTGGGGAGTTTAACGGTTTGAAA 1701086 24 100.0 35 ........................ TTCACATAACGATAGGCGGCGATACTGCCTACCTT 1701027 24 100.0 34 ........................ GGAGTTTCTCGCTAACTAAGAAGAGCTTGTCAAA 1700969 24 100.0 36 ........................ CATCCGTGAAAAATAACGAATGCACAGTTTTGAATT 1700909 24 100.0 38 ........................ TTGTTGCCAACGCAATTATTGTCCCTAAGTCCACTACA 1700847 24 100.0 36 ........................ ACTCCCCAGTTTAACGGAAATACACAAGTCGTTACC 1700787 24 100.0 36 ........................ AAAAAGCGGATAAGGGAATATAGTAAGCATTCTCCA 1700727 24 100.0 34 ........................ TTCTACTCTCGTTAGAAAAATTGAATAAACTCCC 1700669 24 100.0 39 ........................ TTGGGGATAAACTATCTAGAACTAGTTACGCCATATAGT 1700606 24 100.0 39 ........................ AGAGAACTTCAGAGAAAAATATGACTTCATACTGATAGA 1700543 24 100.0 35 ........................ AGCAGTATAAGCGCTACCCATGGGGTCCCGGCTCC 1700484 24 100.0 34 ........................ ATTTGAGGAAACTACAAGTTAAGAGGAATGAAGT 1700426 24 100.0 38 ........................ ATCATAACGACCCTGCTGAGCCTAATCTATCAAAAAGA 1700364 24 100.0 37 ........................ TATTAGCCCTATGCCTTGCAACGTTAGGCCCTTCCTC 1700303 24 100.0 31 ........................ ATGAGTCAAGAGAGTGCTGAAAAAAGTAAGT 1700248 24 100.0 37 ........................ GACAAAATATCGAGAAGCTTTTTATTGATAACAAGTT 1700187 24 100.0 38 ........................ AGAAAATATCTCAAGGAGGGCGAGGAAGTATGCGAAAG 1700125 24 100.0 32 ........................ TGGATGCTGAGTTAACTCCCCAGTTTACCGTA 1700069 24 100.0 39 ........................ TTTTAGCCTGACCATTTCCCTCGTTAAAAAATAAGGAAA 1700006 24 100.0 34 ........................ TTTCACGCTCCATGACCTCAGTGAATATCTCATT 1699948 24 100.0 37 ........................ TCATAGGGGCTATATTCAACAATACGTTGCTCCAGTT 1699887 24 100.0 42 ........................ GAGAAGAAGCAAAGCATACCGCTCTACAAGGTTCCTTCAGTT 1699821 24 100.0 36 ........................ TATGTCGATCTGTCCGGTGTGCTGGTGGGCGAGCAT 1699761 24 100.0 39 ........................ AAATAGTGGTTTCCAAGACTGTGCAAATGCTTTTTTATA 1699698 24 100.0 35 ........................ TTTTAGCTGTTTCTCCATTCCGTCCCACCAACTAT 1699639 24 100.0 36 ........................ TAAAATATTTTAATGTTCCGGAGATAGATTATAACT 1699579 24 100.0 35 ........................ TGATATTTGGAGTGGTCGTGATTTTAATGGGAGCT 1699520 24 100.0 35 ........................ ATTAACTACATCGCTAACAGCTTGGTACAGCCTGT 1699461 24 100.0 36 ........................ AACAAAAAAATGAAGTTTTGGGTTATGACTTTCTAC 1699401 24 100.0 37 ........................ TAGAGGCACAATTACAGAATTTAGTAATTGATCAAAG 1699340 24 100.0 37 ........................ TGAATTCTGCCTTTTTATATAACGCATTACTGTGATC 1699279 24 100.0 35 ........................ TTTGAGACGCTGAAAGACGTAGCGAAAGACTCTGC 1699220 24 100.0 34 ........................ ATTAAAATGCTGTAGAAACACTTGACCAAATATA 1699162 24 100.0 38 ........................ TAAAGGGATCCTGACCTAAGGACTATCGGGCTTACTTT 1699100 24 100.0 35 ........................ ACTATCTCAGCTATCGTCACTATCGACATCTTCAC 1699041 24 100.0 34 ........................ CATTTTATTTATATAGCCTCGTTGTATAGCTTCT 1698983 24 100.0 35 ........................ ACTGCTAAAGAGCGCAGGTATTGCGCAAGACTACA 1698924 24 100.0 36 ........................ ATAATATACGACGCTCTGGTTAGGTAAAGGTACTCT 1698864 24 100.0 35 ........................ AAAATTTCATTCTAAAGAGATAACAGATTTGGGCT 1698805 24 100.0 35 ........................ AGTGAATGCTTGTCCTGAGCCTAGTCTGTTTAACG 1698746 24 100.0 35 ........................ ACATTTGCTGGAGTTCAGAAAATATCAGTAACCAA 1698687 24 100.0 36 ........................ AAAGTTGTTTCAGCCCCATCTTCAATAAGTGAAGGT 1698627 24 100.0 36 ........................ AACATAAAAAACACTGCTAGTTTCTATCTGATTAAT 1698567 24 100.0 36 ........................ ATAGATAAAATAAATAGTTAATGTTTCATAAAATCT 1698507 24 100.0 36 ........................ AACAACGTGATGATACTGACATTTGCGGGCTATTGT 1698447 24 100.0 34 ........................ GCTGTTCATATAACTGTAATAAATTAAGAAACTT 1698389 24 100.0 34 ........................ AACTCTTGAATTGTTAAGTCTTTAATGAATGCAT 1698331 24 100.0 34 ........................ AATGTACACCGTAGCCATTTTTTTGCACTTCTTT 1698273 24 100.0 35 ........................ AAGAACAGCGATGTTTACAAGTCAGCACAAGACGT 1698214 24 100.0 35 ........................ CATTTTCTTGGTTTTATCTATTTACCGTTTTAAAC 1698155 24 100.0 37 ........................ CTAGATTGTTAGCACCGTGCATTAGCAATAATGCGTT 1698094 24 100.0 34 ........................ GATTGCTGATGACGATGGAATAGTTACCACAAGC 1698036 24 100.0 35 ........................ TTTTATTTTCACCGACAAAACGAAAAAAATTGAAT 1697977 24 100.0 35 ........................ TTAAAGAGGCAACAAAGCGAAAAATTCTATATGCC 1697918 24 100.0 35 ........................ TTGTTGTGCTAACTGGTTTATCGCATCCCCTATTC 1697859 24 100.0 35 ........................ TTATGTTATTTGTACAAACTTCTTAGTTGCCAATT 1697800 24 100.0 36 ........................ TTCTTGTAGTTTCGGGAAGACATTCTCACTGGTGTA 1697740 24 100.0 39 ........................ TAGTAGTAGTTAATACTGCTGACTGAATTTTTCTTAGTT 1697677 24 100.0 35 ........................ TTTATTTCAAAAAGTTACACTATAAAGATGAATTA 1697618 24 100.0 34 ........................ TTGGGTAAGATCTAGACCTTATGTTCCTCTTTCT 1697560 24 100.0 33 ........................ TTGGGATATATTGCACAGACAAACTTTGTCTCC 1697503 24 100.0 40 ........................ ATGTTAGGAATATTGTTAAAAATCCGCCTATAATTCCGAT 1697439 24 100.0 34 ........................ ATTTTTTATGCCATACCAACCCATTTTAATCAAA 1697381 24 100.0 34 ........................ CAGTATATGCGTGTTGATGATTTTCTGAAGACTT 1697323 24 100.0 34 ........................ ATAGCAAAGTACGAATAATCTATATTCCTGACCT 1697265 24 100.0 34 ........................ ATATCTCATGGTTATGTTTCTTCAGATCCAGGCT 1697207 24 100.0 35 ........................ GCGGCAGCTACTGGGTCTAACGCCTTCCACTCGAT 1697148 24 100.0 35 ........................ ACATAAGCCAGCTAAAGAAGACGTATCTGACTGAG 1697089 24 100.0 37 ........................ ATTATAAGTAAGGGCTGACTTGTTGAGTAAGACTGGT 1697028 24 100.0 37 ........................ ATGATTATGAAATTTGTACAGCAAATGTTGATGAGAA 1696967 24 100.0 36 ........................ AATGTCTTTTTTTATATAAATTTTTCGAGTCCTAAT 1696907 24 100.0 35 ........................ AGGGAAAAGATCCTCTTCCTAGCTCCTTTCTCTTG 1696848 24 100.0 36 ........................ CCTGTACAACGAAAACGGGACATTGTGGGCAATACA 1696788 24 100.0 36 ........................ CTCGACCTCTTCTACTACTTCTGGTGGTGCACCCAT 1696728 24 100.0 41 ........................ TTAATTAAAGCGGCAAGCTCTCTAGCCAGGCTAGATCCCTT 1696663 24 100.0 36 ........................ AAAACAATGTTTTAGTTTTACAGACATTATAAAATT 1696603 24 100.0 36 ........................ ACTTCAAGAATGGAATACATTTGTTAAAAATTTGCT 1696543 24 100.0 34 ........................ GCCCAAGCTCAGGCTGGAAACAGTGGAAATCCGC 1696485 24 100.0 35 ........................ ATATAACAAAGCGCATTGCTGATACGTTACACAGA 1696426 24 100.0 34 ........................ TCCATGCCCTCGCCCCCGCCTTTTCTTTTTCTTT 1696368 24 100.0 35 ........................ TTCCACATTGATGAGGTAAGCCTCTGAAAAGGTTT 1696309 24 100.0 36 ........................ TGTGACCAAATTGAGGCAGAAGTATCCGCAGGGGAA 1696249 24 100.0 36 ........................ ACCCCTGACTTTGTCCTTAAAGATAATGAGTTCTTT 1696189 24 100.0 38 ........................ AGAAAATGAGTAGTGAAGTTAAGACAAAAAATAAGTCA 1696127 24 100.0 38 ........................ TTCACTGTCAAATTTGTCTAGCAGTTCTTTTGCGACTT 1696065 24 100.0 35 ........................ ATTATACCACGCCAAAGAGATGGCGTGAGGCGATA 1696006 24 100.0 34 ........................ TATTTGAAGGCTTCCCTTAGGGCGTTCTTTAGCG 1695948 24 100.0 35 ........................ GTTAAATTCGGCGCCCCAGTAGAAGTCTTTCTCGC 1695889 24 100.0 38 ........................ CTATGTGTTGATGAGAGCACAGCTGGGCATGGAGCGTA 1695827 24 100.0 35 ........................ AGATGTAGAGAAAACGATCGATTTAAGGCATGCGA 1695768 24 100.0 35 ........................ AATAAATCAATCCTTTTTTTAAGGTCTTTCCAAGA 1695709 24 100.0 40 ........................ TCAACACAAGGAAACACTTACAATTGGTATGAGTATGAAG 1695645 24 100.0 34 ........................ CACTAGACACTGCAGGGACAGATATCAAAAACTT 1695587 24 100.0 37 ........................ GTGCCCCTGTCTCCTGCAGTTTTAACGCTAAATATCT 1695526 24 100.0 36 ........................ ACCTATCACTTTCCTTGCGAATTCAACCAGTGTTAA 1695466 24 100.0 37 ........................ CACCAGCTGTGATGACATAGTCTTTGTCCAGTAATGG 1695405 24 100.0 34 ........................ TTCTTCATAAGGATGTATCTGTACCAGTTCACCA 1695347 24 100.0 36 ........................ GTCTTTACAGAACTTGGGGCGAAGTAGTATCCCGCA 1695287 24 100.0 37 ........................ GATGAACTCGCCTGTGTTACTTGATGTGTATAAGGAA 1695226 24 100.0 36 ........................ AACTCTGAGACTGAGGTTCTTTTTGTCTCACTAGAT 1695166 24 100.0 35 ........................ ATAGGCTAGAAGCTGCAAAGAGGCTGGGCTGGAAA 1695107 24 100.0 34 ........................ TACTGCAAGATCTACATTATAGTTCAATGATTTT 1695049 24 100.0 37 ........................ ACGAGTCTCTTTATCAATATAGTGATGTTATCTACAT 1694988 24 100.0 36 ........................ TTTTTTGCTTTTAGCTTTTCGTATTCTATTAATGAT 1694928 24 100.0 37 ........................ AGTGGCTTAATGTACCTTTTGGTACTGACTATCCAAT 1694867 24 100.0 34 ........................ GCTGATAGATAAAGATAAAATAAAAATAGACTTT 1694809 24 100.0 37 ........................ GTCTACTTTAAGTGAACTTTATTGTAATCGTATCAAA 1694748 24 100.0 33 ........................ TAAGCGTCTAAATAAGTTACCGACAATTGTTAT 1694691 24 100.0 35 ........................ ATTGTTGAGAGATGCTACTTATGAAGAAAATGGAA 1694632 24 100.0 38 ........................ CTTCATAACTCAACAAAACAAATAAGGTATGCCACTCT 1694570 24 100.0 37 ........................ CTTAGCGTAAGAGAGCGTATATTATGCAGCGTATATT 1694509 24 100.0 37 ........................ AATTTTCAGAGTCACTTACTTGGAAATTTTGTCTCTC 1694448 24 100.0 36 ........................ CAAAAACTGCCGTTTAATGCGCCACTTCTAGAACAA 1694388 24 100.0 35 ........................ TTTTGAGAATAGAGTCTATGAAATCTCCTTTTATT 1694329 24 100.0 36 ........................ AGGTTCACTCACCCTCGCCTCGCAAGATATTCCAAA 1694269 24 100.0 39 ........................ ACAATTCTTTCTTTTTTTATAGCTGTTGTACACATTCCT 1694206 24 100.0 35 ........................ TAGTAATATCTAGCGACTTCCATAATTGCTGATGC 1694147 24 100.0 35 ........................ ATTATAAAATTGATGTATTATACATTTGCAGAAAT 1694088 24 100.0 39 ........................ CGCTATTCTCAAGTACTCTGCGATCTCGCCCTCTGAAAG 1694025 24 100.0 38 ........................ TTCATATCGCTCTTTTGAATACTTCATCAATTCTTGTT 1693963 24 100.0 34 ........................ TTTTATATTCTGTTGTTCATTTTTTATATCATTT 1693905 24 100.0 35 ........................ ATATTATTAGGAATGACAGCCGGAGCTACTACTGT 1693846 24 100.0 35 ........................ TTGTACAAAAAAGCTGAATTTAAGCAAGTCGGAAT 1693787 24 100.0 36 ........................ ATTTAGTTTGAATATTATGAGTAATTGAGAGTTGGT 1693727 24 100.0 37 ........................ TTGCTACAGGAAATGGAGAAGGTGAATATCAGGGAGG 1693666 24 100.0 38 ........................ TTTTATCTTCAAAGAGTTGAAAAAGAGAGGGTTAGATA 1693604 24 100.0 37 ........................ CTTTCTTCTTCATCTTTATCGATCAAAATTAGCCTTA 1693543 24 95.8 37 .C...................... TTTATTATCAAGAGCATTAAGTAATTTTGGAAGACCG 1693482 24 100.0 37 ........................ TAATAACTCTCCTACCTTTTCTATTTTTAGCATTTGG 1693421 24 100.0 37 ........................ TATTTCGTAATCTTCTATAAGTTTTGAGTTGAATGGC 1693360 24 100.0 34 ........................ GTATAGTACTGGTGTATTACTTCCAGATATCCCT 1693302 24 100.0 35 ........................ CACTCTCTTCAATCCGATTATATCAATTTACTACA 1693243 24 100.0 37 ........................ GATTACTGCAGTGATGATGAAATATCGTGCTAATGAT 1693182 24 100.0 36 ........................ GTTGTAGTCATTCCAGTAATGACTAAGATATTGTGT 1693122 24 100.0 37 ........................ TGTAATACAATATTACGCTAGCAATACAACAAACATA 1693061 24 100.0 35 ........................ ACACTCGCCGACTCTCTCTCATTTATTGCGAGATA 1693002 24 100.0 35 ........................ GTGTTGTTCGAGACTTCTACTGCCATTAATATTAG 1692943 24 100.0 36 ........................ GATTACTTTATGCTTTATTCAAATATAGAATAAAAA 1692883 24 100.0 35 ........................ GTTGGGTATTTAAGCTTACGCATTATATTTTTGAG 1692824 24 100.0 37 ........................ GATTACTGCAGTGATGATGAAATATCGTGCTAATGAT 1692763 24 100.0 34 ........................ TAATATAGCGACCACAGAACTCTTGCTATATTTC 1692705 24 100.0 35 ........................ CTCTCAAGAAATTCCAAAAGTTTATCAAACTCCTC 1692646 24 100.0 37 ........................ TTTCTACATTATGTACTACCGATAAAACATGTGATCA 1692585 24 100.0 37 ........................ TTCTCTTGGTTCAAAACCACTTAAATCTTCGTTATTT 1692524 24 100.0 36 ........................ TTTTCATCAACATCTTGACTCCGGTATTCGACATCA 1692464 24 100.0 35 ........................ AGTGGTCAGGGCTAGATATCTGCCCACTACCAACT 1692405 24 100.0 36 ........................ TATCAAGAAAAATAGGGCTAGCCCAATTCCAATGAT 1692345 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================== ================== 161 24 100.0 36 GTAATAACGACAAGAAACTAAAAC # Left flank : TGTCTTTACATTCATATGTGGAATTATTTTTGAACAATTTAATATGTTGTAGGGCTTGGGATCTCATGAACAGTTACAGTAGGTGAGCCTCTACACTTACTTCATTGAAGTTTGTCCACTGCGTTAAAAAGTGTAATATATAAAAATTTTTAAGTTACAAATATACCTTTAAAAATTTTTAATTTTATTACATGCCTAGATAATTAAAAGTAAGAGCTTCATTGAGTCTAGTAGTAAACTGTCTAAAATTCATAGAATTTTATTATACACTTATTAGTCTACCAGGAGAACATCGAAGAAATTCATGGATAAACATAAAAAAAGAAATGGAAGTGGTATTATGTTATTTCCTTCCGTATCCTTACGTAAAATGGTTTTAGGGTTACCCTGTGTAGCCTAAAACTCCCTTCCGTACCTAAGGGCACAAAATTGACAATGAAGGAGAGAAAATATTTATAAACCAGGAAATAAGAATGTAAAATTGATGGAGGCAAGGATCA # Right flank : TCCATGTAAAATATCATGACACATATATTAATTTTGAAGCAAAATTTTACGTCCCAAATGTTATCGCTTATGTAGGGTTATAACGTGTCCCTTGTGTGGTTATGAGAATCAGTACTCATACAAAGTTGATTACCATATTGATCCAATCTCGGCGGAGGGGGAGTCTGCAACGTTAAATGTTCCCTCCTTCAACTCTGCTGTAACAAATAAGGAAAAAGTTTTTATTCTCTCAATATTTTGATTTAGTTTATGAGGATAATTGACGAGACTAATTGACATAGTGAAGAGTAATCCGAAGATTCTCCTGTATTTGCTGCTTCCAGCGTATGTACCCATTTTTCTCACCGTTATAGCCATTATTGAAGCGTTGACGGCAGTCCCTCATTTAAGTGAAGTAACGCCTTTACTAATTATCACACCTATAATAACTGTGTTCTTCGTTCCCGCAATAGCATTCTCGTTGTACCCAAATCTACCTCTGGAGGTGGTAAGAACTGGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATAACGACAAGAAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 1714292-1719888 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020362.1 Sulfolobus acidocaldarius strain Y14 16-22 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================== ================== 1714292 24 100.0 40 ........................ AAAGGAGATTGACACCCCGGTAATGTTCTACTATGTGAAA 1714356 24 100.0 36 ........................ GAAGTCTTTCTTCAATGTCGAGGACTGTGCACGTAA 1714416 24 100.0 36 ........................ AAAGTGACTGACTACAAGGCAATTGTTGAAGTACTT 1714476 24 100.0 35 ........................ TTAGTGACCGAAAAAGATAGAGAGATTTTTGACAT 1714535 24 100.0 33 ........................ CATATTCATCAAAACTTCAAGACTACCTATACG 1714592 24 100.0 36 ........................ ATCTGTTATATCAACAATCTCTCTATCTTTTTCAGT 1714652 24 100.0 40 ........................ GTAAAATCATATTGAGTATTTTGTTTATGCGATTTATGTT 1714716 24 100.0 35 ........................ GTTGAAAAGAAGAGAGTTCTACTTATTCTACTTAT 1714775 24 100.0 35 ........................ ATGCGTCCTGGTTAGGTAGATTATAGTCCCTCCTA 1714834 24 100.0 35 ........................ TAATTAGATTTTAAAGCGTTATATGCTACGCTCCC 1714893 24 100.0 37 ........................ TGTCCAATTCTTGTAAGAATTCTTTCTGACTTTGGGT 1714954 24 100.0 36 ........................ ATTGATGAGGCAAGGGATCAAGGTGAGCTAAACGTT 1715014 24 100.0 37 ........................ AGAAGGTAATTGAAATAGGAGGAGGTAACGGGTATTT 1715075 24 100.0 38 ........................ TTCAACAACCCTGCCAGTATAAGACCTATCAAAACGTC 1715137 24 100.0 35 ........................ CTATAAAATTTTGCAAAAGGTTGGTGAGGAGAAGT 1715196 24 100.0 36 ........................ TTGCTACAAAGTTCCCCATGTGTTTGTAGGGGTAAT 1715256 24 100.0 36 ........................ CCTTACTGTATTGTATGGTATATCAGCTTCTTCACT 1715316 24 100.0 36 ........................ TGTCCCATTTACTACATCAAATTGGAAAATGTTATA 1715376 24 100.0 38 ........................ ATTAATATAGCACCACCTCCTAAAAGAGTAATTGAAAT 1715438 24 100.0 38 ........................ ACTTATGTTTATGAGTATTACGCGATGAAAGTTTGGGG 1715500 24 100.0 36 ........................ ATCTTCTCTGTCCTCTACTACTTTCTGCTCTTCTTT 1715560 24 100.0 36 ........................ TGAAAAGTTCATAAAAAAGTACCCTAACGTAGAACA 1715620 24 100.0 34 ........................ AATTTTATGATATCGCTTTTGTTCAAGGAAACAT 1715678 24 100.0 39 ........................ AATTCTAAGTGCACAAGAAGGACTAGAAGAGGCAGGCCT 1715741 24 100.0 34 ........................ TAATGCCCAGTAACATAGATGCCTCCTTGATTAT 1715799 24 100.0 35 ........................ AATTTGGATTGACGTCACCTCAAGATCTATTACCT 1715858 24 100.0 36 ........................ ATATTTAAGCCTTACTCTTTACATTAAAAGTAACAA 1715918 24 100.0 35 ........................ TCGACGTTAGTCTTAGATTTTTATCATTTTTAGGT 1715977 24 100.0 34 ........................ TTGTGCTCTTTAATGTCAAACAGTGTGATCTATT 1716035 24 100.0 35 ........................ ACAGTGCATGAAGTAGCATCATATGTCGTAAGTGA 1716094 24 100.0 36 ........................ TCTCTGGGTTAAGTGCAAAGAGCACTGGGATTACAA 1716154 24 100.0 34 ........................ CAACAAGGCTGAGAAGATAGCAAAGAAGCTAGTA 1716212 24 100.0 38 ........................ TACAATAATTTCAGATTTCCAGTAAATGATACAAATTC 1716274 24 100.0 36 ........................ TTGTCATTAAACTGACAACTTTGTCTCTGACCCAAA 1716334 24 100.0 34 ........................ AGTAGCGGTATACAAAAATGTATTTGTTGTGATA 1716392 24 100.0 34 ........................ TGGCTCACAGGCATTAATACCTGCAAAGCCTAGG 1716450 24 100.0 39 ........................ AAAAGTTTGCCAATTTAGGTGCTGTGCAGGAAGCATTTA 1716513 24 100.0 34 ........................ GAATAATTGTAGATCAGCCATCAACTTCCACACG 1716571 24 100.0 36 ........................ AGAAAATGAGTAGTGAGATAAAGACAAAAAATAAGT 1716631 24 100.0 39 ........................ AATTTCTATATAATCCAAGAGACACAGAGAGGTTTCTAC 1716694 24 100.0 37 ........................ TACATTACTTTTAGAAATATAGTATGAGCGTAACATA 1716755 24 100.0 33 ........................ CAGTACACAAAGTGGATAGGAAAAGTCAACAAT 1716812 24 100.0 36 ........................ ATCGTATATTATATTGGGGCAGAAAAAATGAATGAT 1716872 24 100.0 34 ........................ CAGGTTCAATTTCAGTAAATAATGGCATTACAAT 1716930 24 100.0 38 ........................ AACATCAGACTTTTGCACTTTTATTAGAAGGCTTTGGA 1716992 24 100.0 34 ........................ GATACATTGCATATATTGGCAATCAGCAATACAA 1717050 24 100.0 36 ........................ ACTATATATTGTTTGGAGCTTATCATAAACTTCATC 1717110 24 100.0 34 ........................ CTGAATAGAGAGATGATAGAAGAAACGGTAAGTA 1717168 24 100.0 39 ........................ TCAGCCTCTAATTCTGCTGCAACTTCCATCAATTTCCTT 1717231 24 100.0 39 ........................ ATTAATTCCAAAGGACATTGAGAAGAAATTTGGCTTAAA 1717294 24 100.0 37 ........................ ATATGAGCAACAGCAACTCAAATCTTTATATGAAGTC 1717355 24 100.0 34 ........................ CACCAAAGAGTTTTTGTCCAAAGCCTTTTATGGA 1717413 24 100.0 37 ........................ CAGTCTCAATGTCTTTATGAGACAATTCTATATCCAA 1717474 24 100.0 36 ........................ GCACTTCTACTTGCTTAACGCTATAGCAAGCAAGAA 1717534 24 100.0 38 ........................ GTTCATCAACCTCATGCTGAGTAAGACTATTAGTATGT 1717596 24 100.0 36 ........................ CTCGTATTCGTAAAAGCCCTCGTGGGTGGTGACGAT 1717656 24 95.8 35 .......................A CTTTACAACTAATTTTTTCAGGAAAACAAATTGAA 1717715 24 100.0 34 ........................ TATGTCTTAGATAGTTGAAAAAGCTAAAGCTTTT 1717773 24 100.0 36 ........................ GAATGTGTCCCCCTAGAGGTTTTCACCAAACAACCA 1717833 24 100.0 36 ........................ AAAAAACCTTTAACCTCTATCGAATGCTGTCAAAAA 1717893 24 100.0 35 ........................ AACGTTACGACCACTACTACTCAGAAGAAGATAGT 1717952 24 100.0 37 ........................ GAGGGATGAAGGCAAATCAGTATCAGCAATAGTAGAG 1718013 24 100.0 35 ........................ GAAGTAGAACAGCTGTTTTTCAGGATTGAAATTAT 1718072 24 100.0 39 ........................ AAGAGAATACTTTCTCGCCTCAGCAAGAATCGTATCAAT 1718135 24 100.0 35 ........................ GTATGTGGGAGAGCTTTATGAGTGGTAAGACACAC 1718194 24 100.0 33 ........................ ATGCAGGTACTATACTGAGCCTGATGAACAGCA 1718251 24 100.0 34 ........................ AAATTTAAGGAAAATGGAGTGTATGTATATAAAT 1718309 24 100.0 35 ........................ CTCAATTATTTTCAATGCTTTTTCTTTTTCGTTGT 1718368 24 100.0 36 ........................ ACATCAGCACTTATGGATACTACGCCATGCTCATCT 1718428 24 100.0 35 ........................ ACTATTACTTTTGAAAATATGTAGATAAGACTGGT 1718487 24 100.0 34 ........................ TTACAGTTGTTCCGTTAGGAAGTATATAGTTACT 1718545 24 100.0 37 ........................ AAAATAATCATAAAACCCGAGCATTACGAAGAATTGA 1718606 24 95.8 37 .......T................ TGTAAAGGACTTCTTAAAAAGGTTAGAGGGGTTTCTC 1718667 24 95.8 35 .......T................ GTAATTATTCTGATGGGTGCTATAATCTCGATGGC 1718726 24 100.0 35 ........................ AGCGATTAGTTTAGTCGAATTAGCTATTGCGACTT 1718785 24 95.8 34 ...........G............ ATGGGATCCTGATAATTCGGCATCAGCACAATTC 1718843 24 100.0 35 ........................ CTCTTCATTTGTCTCGTGAAATATAGGGTTTTTCA 1718902 24 95.8 35 ...........G............ ATAGGGTAGTTCACAAAGAGCCAGCCCTCGTCAAC 1718961 24 100.0 35 ........................ CTTTACGTAGTAGTTATAGAGCTTCGTTACGTGCT 1719020 24 100.0 38 ........................ CTTGAACCATTGAACCTGCGATTGCAGGGATTAAGTAT 1719082 24 100.0 36 ........................ GCTGACTGGGGGTGAGCCAGAAATGAAGACTGGAAG 1719142 24 100.0 36 ........................ TAAAATTAGTCTGCTGGCCAATTAAGAACAAACTCT 1719202 24 100.0 35 ........................ GTGCAACAGGGTGAAACATAGATGAGCACATTTTT 1719261 24 100.0 35 ........................ ATTATGCTCATTATCTCTGATTTCGACCTTAAAGC 1719320 24 100.0 37 ........................ CTACATTGTCCTGAAGTCCTAACTTCTTTAATTCCTT 1719381 24 100.0 39 ........................ TTTTTATTTTCAGTAGCTATCACCATAGTAGCCCTAAAA 1719444 24 100.0 37 ........................ TACTCCCCAGGCTTACCCAGCAAGAAGAGGAAGCCTT 1719505 24 100.0 35 ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 1719564 24 100.0 36 ........................ CATTTTAGCTCAAGCATCACCAGCATCAATTGAAAG 1719624 24 100.0 36 ........................ ACCGTTCCGTAGATATTATTACTGTAACTCCCTCCC 1719684 24 100.0 37 ........................ ACTGGGCTCCCCGTGATCACTCCAGGTCCTTATGTTG 1719745 24 100.0 36 ........................ GACGCTAAAAAGCAAGAACAACAATCACAACAATCG 1719805 24 100.0 36 ........................ TTTCTTAGTGAATCCCATGTACGTATATCTAATTTA 1719865 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================== ================== 94 24 99.8 36 GTAATAACGACAAGAAACTAAAAC # Left flank : ATCACTTAGAGTATAAAACTTCCTCCTCACGTTCACTAAAGAGTTCAAGAACGGCGACACTAGGACCACATCGTTTCTCTTTCCGTGGACGAGAACTGGTATATTTAGACTGGAAAGGAACAAGATCACCTCTGATGTTAGCCTAACATTATTACCGACAATGACCACTAACTCTAGGTCCAGACTAGACACAGTTAAGTTCTTTCCAACGGACCATGTCATCTGAAGATCTGAGCCTTTCCTCATAATTGTAGCGTTTTTAATCACTAGAATGGACATAATAGAAATTTTTCTCTCAAAAATAATAAACTTTTATCATAATTAATAAATTTTGGGTATTATGTTATTTCCTTCCGTATCCTTACGTAAAATGGTTTTAGGGTTACCCTGTGTAGCCTAAAACTCCCTTCCGCACCCCAGGGAACAAAATTGACAATGAAGGAGAGAAAATATTTATAAACCAGGAAATAAGAATGTAAAATTGATGAAGCCAACGATCA # Right flank : CACTGTAACTATTTAAAATAGAATGATGAGAGAATGACAAAGCCTTGCCGTTTATGGCGAGGTAAAGGTTTCTACTTACGAGAGAAAAGTTGTTATTAAGAGGAAGCCCGTAAGAGCATGGGTCAGTCAGTGTGTGTCCCTCTTTCCTGGTACATATCCCTGAGTCTCGAGGAGCGTGGAGTTAGGGCAACTCCACCAAAGGGATAGGGGTTGAGTGGCTGAAGGCTCAGCCAGTGGTCTACCACTGAAAGAGTGGAGCGGAGCGGGCTTCTGAGCCCACTAGCTATGAAGTGATAAAAGTGAAGGTGATAAACTACAGACCTGTGAACTGCCCTAGGTAACCCTCACTCTTTAGAGCGAGGAGGAAGTCAGTATCACACCAGATGCTGTGATGTCTGTTGCAACCTTAATTGCAATTGTATCCGACGAGACTGTCATGGGAATCATTCAAACTTAGAATACATAGATCCTCAATTCATCCTCTCCAATCATATGTCTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATAACGACAAGAAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 1830719-1830440 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020362.1 Sulfolobus acidocaldarius strain Y14 16-22 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================== ================== 1830718 26 96.2 36 .........................C ATATCATCATCTCTCATCATCTGCCTGCAACGTATC 1830656 26 100.0 35 .......................... CACATTCATCCCTATAGACATTTATTGAAAACGAG 1830595 26 100.0 40 .......................... TTGCTTTAACATAGATCGGTGAAAGCATCTCAAAAGGTAG 1830529 26 100.0 38 .......................... AAGTATATATCATTTGAATGAATGTTGAGAGCCACATT 1830465 26 73.1 0 T..A.G.........AA......G.C | ========== ====== ====== ====== ========================== ======================================== ================== 5 26 93.9 38 GAAGAATCCCATAAGGGATTGAAAGT # Left flank : TGCCGATTCCCCTCTTGTTTTGGTACATCGAGGGAAATTTTCATGTAGGAGAGATTAAGTTTCCTTCTAAATACTTTTCAGTAATAGAGGTTGTTTAATTTTAGATAAAAGAAGGGAATTTATAAATTTATTTATAAACACTACTATGAACGTCTTTTGAAAAATTATACTATGAGCAAAGAAAATTATGAAAAACTTTTCAAGGTGACCTTACGATTTAAGTAGTTAATACTAGGTGTAATCTTACCATAATTTTCGATTTCGTCATAAGGTTTATAAACGTCATTTTTCGAGTCTCAATGCAACCTATCCCAACTTAGTCACAACCCCTTAACATTTATAAATGCACAACCATCTTTCAACTCTAGTTAAGCACTATGCGACCAAAAGACCTAAACATAATTACTAGGATTCAAGGTCGCATGATTAAGTTAGGGGCTTAAGCAAAAGTTTATTAACAAGAACGTCAAATTTAGGATAAGGGAATAATAAATACATCA # Right flank : CGTATTCATTTTTATATAGAACTTTAATTATTGAGTAGAAGAGGTCAGTAATGAACATTTTAACTATTTACTTTCCCATTTCTCTACGGAGAAGTTCATTAAGAACTTTGATGATAAGAAAAGGACTCTATTATAATGAAGTAAAAAGTGTTTAAGTCAAGCAAGTGAAGCATAGGTACTAAGAGAGTCCTTTAAAATTTTATAGGGTATATCCCCATGAAGTATCTACTTATCATATTCGATAACGTAATCGAGAGGCGTGTTAAGGGCGTATAAGTTATGCAGGATTGAAATACGCTCAATTCTTGCATCATGTATAGGCTATAACAGAGAGCTGGTCATGAAGAGTTTTAAGAGAAACTCTTTCTTTAGATAGAGAATCACTTTAGGAGCCCTCATACCCTTTTATCTAGTTGAGACATAGGAAGAAACTAGTGAAGATAAGTGTAGATATTTTTCTAAGTCAAGTAACCTCGCAAGATGCCGTGATCTTTAGGTTT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGAATCCCATAAGGGATTGAAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 4 1870762-1870104 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020362.1 Sulfolobus acidocaldarius strain Y14 16-22 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================== ================== 1870761 25 100.0 39 ......................... CTCTGTTCACAGAAATATTTGTCAAGCTCAATCTTAAAG 1870697 25 100.0 42 ......................... AGTTTTGGGAACACTTCTCTTCCCTTTATCTGTTAGTTCATA 1870630 25 100.0 39 ......................... CTCAAATCGTTTGCGTACTGTTTAAAGCTTTTTAAACTC 1870566 25 100.0 37 ......................... AGCACCCTATTTTCAGGTGCTGGCTGACTAGAACTTT 1870504 25 100.0 38 ......................... GGGTATAAATAAAGTATGCCAGCCTGTGCTAATGACAG 1870441 25 100.0 36 ......................... AGTTTATTATGTCATTGGACAGCAAGTCATACGAGA 1870380 25 100.0 41 ......................... TTTTCTCCTTTTTTCATAATACTTCTTTCCATATTTCCGCA 1870314 25 100.0 37 ......................... GCTCTGCTAACATTAGCCTCTTCTCCTGCTAGAGCTA 1870252 25 100.0 38 ......................... ATCTTGTCGCTTATGTGAACGTCTAGGGAGTCGATAAT 1870189 25 100.0 36 ......................... CCAAACCAAGTTAGGTTTTATGTTGAAGGGGACTCT 1870128 25 96.0 0 ..............A.......... | ========== ====== ====== ====== ========================= ========================================== ================== 11 25 99.6 38 GATGAATCCCAAAAGGGATTGAAAG # Left flank : TTCTTGCCCTACTGCAATCCCCTAAGGCAAGGGAGTCTTTATGTAAGGGAGATATAGGTGTTGTATTGAAAACTTTTCAGTATGTCAGACCTGTTAAATTTAGGTCAAATACGTGGGTTTATAAGTCTATTTATAAATATTTTGATAAACATATTTTGAAAAATAATTACAGATTGCCTGAGATGGCTGAAGAACTTTTTAAGTTTACGTTACTAAAAACATAATTGTAGGTTTGATGAATCGCACTCTTTTCTTCGATCTTTTCATGAAGTTTATAAATGTTGTTTTTCGAGTCTCAATGCGACCCATCCCAACTTAGTTACAACCCCTCAACATTTATAAATACACAACCATCTTTCAACTCTAGTTAAGCACCATGCGACCAAAAAACCTAAACACAATTACTAGGACTTAAGGTCGCATTAAAGTTCCCCATAAAACACCTAAAATTTAAATACAAGGAAAGGGAAAAATAAGACAAGGGATATAAAAACAAACCA # Right flank : ACGGCAATTATGGTTATATCATAATGATAATGCTAAGTCGAGCGTATTAGACTAGTTATATCTAAGGGATGCGCTTTACTCACAGGTAGTATAGGAGTAGTGTAGACTTGGAGGAGGAATAACGCCATTTATTAGCTCTACCTCCACAATAGTTTAATGCAGCAATAATGTCGTCTCTGGACAATCAATATAGATCTAGAATTGCTAGGAAGGGGTGCGTTTTCGTAAGCTATACTTCTCCTCACACGCACGTTAGTGTCTGTACTGAATTACAAGAAGATCTTCTACTTTAACGGCACAACACAGAGCTCTAAGCGATAAAAAAATTAATAATGAAATAAATATAAAATTAAGTATGAAAGATGGGAAAAAGATAGCATTCGTTAAGGACCACGGGGCTCACCTGAGGGTCAACAAGGGAATGATAGAGTGCTCAGTTAAAGATGAGGTCAAGTGGTCTGTGTCTCCTTCAGAGTTGTCCTCGATCGTCGTGATCTCAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGAATCCCAAAAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: R [matched GATTAATCCCAAAAGGAATTGAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //