Array 1 159177-157294 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADIWN010000007.1 Acinetobacter baumannii strain A9 contig00007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 159176 28 100.0 32 ............................ TAGTATCACATCAATTCTTATTGAGCTAACAT 159116 28 100.0 32 ............................ GTAAACTTTTCAAAATCTGTGCCGGTGTTGTA 159056 28 100.0 32 ............................ CAGACTGGCCTGATAAAATTATTAAACTTTCC 158996 28 100.0 32 ............................ AGATGAATATGATCAGGGTTAAACACTTCGGA 158936 28 100.0 32 ............................ GTAAGGGTACTTGCTGTGAGTTAAATGACAAT 158876 28 100.0 32 ............................ AAACTTGGAAAAATGGCGGTGAAAGTCTTATT 158816 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 158756 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 158696 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 158636 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 158576 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 158516 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 158456 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 158396 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 158336 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 158276 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 158216 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 158156 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 158096 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 158036 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 157976 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 157916 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 157856 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 157796 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 157736 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 157676 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 157616 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 157556 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 157496 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 157441 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 157381 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 157320 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 32 28 98.2 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : GAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 164267-167296 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADIWN010000007.1 Acinetobacter baumannii strain A9 contig00007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 164267 28 100.0 32 ............................ GTTTGTAACTGGTGGCGACTTCACTCCACTGT 164327 28 100.0 32 ............................ GGTGAAGTGGCAGGTAAAATTATTGAGCAAAC 164387 28 100.0 32 ............................ TCCTCGATCGGCTGTGAAAGTACATATTTACC 164447 28 100.0 32 ............................ GACAGCAGCGGAAATTACAGATCCGACAGCAA 164507 28 100.0 32 ............................ TACACTTTCACGTGCTGCTTTAACCGTGGGAC 164567 28 100.0 32 ............................ ACCACCTGCGCCAGTCAATTCTGTTTTATTGG 164627 28 100.0 32 ............................ CAATACGATCCGTGCCTTGGGTAAAAACTTAA 164687 28 100.0 32 ............................ TTTCTATTCAAAATGCCTGAGGATTGCGATTA 164747 28 100.0 32 ............................ TAAAATTGGTGTGACCATCGACATGTTCAAAG 164807 28 100.0 32 ............................ TAAAGCGGAAAGTAAGGAGGGCTAATGTGGAT 164867 28 100.0 32 ............................ AGGTAAAAAATGAAATCGCCAAAGAATATCAA 164927 28 100.0 32 ............................ TAGAACTATTTTTATTGGTGAATTTGAGGTAC 164987 28 100.0 32 ............................ GTTCTTTTCTGCAATATGTGCCATTAGGTATT 165047 28 100.0 32 ............................ ATTTTAGATGAAACAAAAGATAGCAGGATTAT 165107 28 100.0 32 ............................ TTCCGCAATACAAATCACTGGATCAGCCAGGT 165167 28 100.0 32 ............................ TGAGTCTTTGATTTCCCAAATATTACTTGAAA 165227 28 100.0 34 ............................ CCTGAAAAATTTCACTGTGTCCATTTCGTTATTA 165289 28 100.0 32 ............................ TATGTCTTTAAATTCTGAAAAAACACTTGTTC 165349 28 100.0 32 ............................ GAAAAAATTGAAAACTTTTTAGAAGTAAATGA 165409 28 100.0 32 ............................ GCCACACATGCCTAAAAACGCAAGTGCGCTCG 165469 28 100.0 32 ............................ ATTATCAGATAAGCCTTTTATGAATGATCGTT 165529 28 100.0 32 ............................ ATTAGCTATTAGCTTTTTGGCAACAACAACAG 165589 28 100.0 32 ............................ AGTTCATGAAAACAGCTTTAAAAAGAAAGCAC 165649 28 100.0 32 ............................ TCCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 165709 28 100.0 32 ............................ TTGCAAGCTCGTCTAGCTAAAGTAGACCCTAA 165769 28 100.0 32 ............................ TGGTACGACAACTACGAAAAGCTGAGCAAAGT 165829 28 100.0 32 ............................ TCAACTTAAATGGATGCTCCCCGCGGTGAATT 165889 28 100.0 32 ............................ TTGATTGCTAGACGGATTTTTAGGCAGATCAT 165949 28 100.0 32 ............................ GAGTTTAATGCGCTATATGGCGACGAGGATTT 166009 28 100.0 32 ............................ CATGCAATCGCGTTGATTACCGCAGCTTCGAA 166069 28 100.0 32 ............................ ATGAGCCGCAACCATACGGTCTATGACTTCCA 166129 28 100.0 32 ............................ ATAGCGCCCTGCTCTATGTTGTCACTTCCGAA 166189 28 100.0 32 ............................ TCCAAGTGAATCGGCTCCTAATGCAAATGACC 166249 28 100.0 32 ............................ TGAAAACCAATATGCTGCCTAATTGCCATAAG 166309 28 96.4 32 ....A....................... GATCTGCGTCCATTTGTACTTGCTGCGGGTGC 166369 28 89.3 32 ....T.......AT.............. ATATACAGCACCGCTTAGTGCGACGCGGTCAT 166429 28 89.3 32 ....T.......AT.............. GCCCACAGGTTGAGCATCAACGGCCATCGAGA 166489 28 89.3 32 ....T.......AT.............. ATCATAGAGCTCACTTTGTCGTTGAGCCTGCA 166549 28 89.3 32 ....T.......AT.............. AGAAGGCCCGTAATTTAACTGTAAGCCGTGGT 166609 28 89.3 32 ....T.......AT.............. TGCAGCTACTCGACATGTTGGTAGGGCAGATG 166669 28 89.3 32 ....T.......AT.............. CAGTCGGCTGGTGCTAATTGAATAAAATCGTT 166729 28 89.3 32 ....T.......AT.............. AGATTGAGGCGATTTTTATCGCGGACATTGCC 166789 28 89.3 32 ....T.......AT.............. CAGTCCCCGCTTTGAAGCATTCCCATCAGTAC 166849 28 89.3 32 ....T.......AT.............. TCACAGCTATCGTCTGGCTGCCGTCGCGTAGA 166909 28 85.7 32 A...T.......AT.............. TTATTATTAAACGGGAAAAGTATATTCTTGCT 166969 28 89.3 32 ....T.......AT.............. ATACTATTATAATGATCTAAACCCATTACAAC 167029 28 89.3 32 ....T.......AT.............. ATCATCAATAAGTTGGCCTTGATTTAAATAGT 167089 28 89.3 32 ....T.......AT.............. AGATACAAACGAGTTCGCATCTCGACCAGAAG 167149 28 89.3 32 ....T.......AT.............. ATTATCCAGATAAAACCATATCTACAAAGTGG 167209 28 89.3 32 ....T.......AT.............. TCAACCTGAACACAGACATACATGTTCTATTG 167269 28 78.6 0 ...GC.......AT..........AT.. | ========== ====== ====== ====== ============================ ================================== ================== 51 28 96.3 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : ATTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTA # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : GTTCTTCATCGCATAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //