Array 1 42515-42698 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZQ010000033.1 Trichormus variabilis FSR NODE_18_length_50578_cov_10.594, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 42515 37 100.0 36 ..................................... GACAAAGGTAAAAAGACTTGGAGTTTGGAGGAACTT 42588 37 100.0 37 ..................................... TTCTCCTCCCTCCAGCGTCGCACCACAGGAATACTCA 42662 37 97.3 0 ..............T...................... | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 99.1 37 GTTTCAACACCCCTCCCGAAGTGGGGCGGGTTGAAAG # Left flank : CGATCGCTGCTTATAATTCTCGCCGAAGAACCTGATTGACAAAAAGCAGAACCTTGAAAATAGAATAGATATAACTAATAGCGCCGCAGTTCATGCTTTGTTCAAAGCCTCTGTACTGTGTAAATGTGGGTTAGTTTGACTGTTGGAAAACAGTCTTGCTTTCTGACCCTGGTAGCTGCCCACCTTGATGCTGCTGTCCCTTGAGGACAGGAATAAGGTGCGCCCCCAGTAATAGAGGTGCGGGTTTACCGCAGTGGTGGCTACCGAATCACCTCCGATCAAGGAGGAACCCACCTTAATTATTTATTTTTGGCAAACCACAAGCGAGGTCAATTTTCCAGGGAGGTTTGCCAAAAGTCCAAATCCCTTGTCTAGTCTGCGTTTTATTTATTGGTATGTTTCGATGATTCGCCTTGAAGGGTGAAGTCGAGAGCAGATTTAGACACCTTTGCCAAAATCACTTTTGGAAGTGTCTCTAGATAAGGGTTTGGTCGGGCGGA # Right flank : GACCTTCATGCAAGGATATAAAAAATTTTAGGTGGGTTGAAAGGCGCACTTCGTTCGGGATTTTCCCTGACCGAAACAGTACCAATAAATCAAAGCTATTATAATAACAGCTTCTAATGCCAATACACCTTGATGACTAAGTAATTTGGCAACGCGGACAACAACTTGGCAATACGGACAACAATTTGTCAACGCAGACAAAGAATTTGGCAATCGACAACAATAATCGGGATGACTGGATTCGAACCAGCGGCCCCTTCGTCCCGAACGAAGTGCGCTACCAAGCTGCGCTACATCCCGTTAAAAAATTTATACGCCTTTTTTAGCATAACATAAATAATAGTCAATACAGAAAAGACATCTACATCTATATATATAGATGAATCGGAACGGGATTTGCTTGCTAGGATTAGATTTGTATAACATTCAGTGGTAAAAGCGGATTGTGACTGTAAAACCAGACTGGTTGCGGGTAAAAGCGCCTCAATGGGAGCGCGTTG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACCCCTCCCGAAGTGGGGCGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.60,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 75764-77833 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZQ010000008.1 Trichormus variabilis FSR NODE_1_length_103685_cov_11.4305, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 75764 37 100.0 35 ..................................... TCTCTGCGGCAAACAGTGCCTATGCTGCGGGCGGG 75836 37 100.0 38 ..................................... TATATATTTCTCTATCGCAGACAATCTTCTGTTAATGC 75911 37 100.0 40 ..................................... ATTCCTATCGTGATTGAACTGACTATCAACGTGAGGACTG 75988 37 100.0 36 ..................................... CCTAACTTACAACGCCCCACTAATTCACAATATTTG 76061 37 100.0 39 ..................................... GATAGAGATGATTGGTCGAGGGGAAATATCTCTGGCCAA 76137 37 100.0 44 ..................................... CACTTTAGACGAAACTAAAATATATAGCGATTGTACAAGTCAAG 76218 37 100.0 35 ..................................... CTAAAACAGTTCCCTCAAGAGTGTTCCCAATCAAT 76290 37 100.0 37 ..................................... TTAATTTTGATGTTCCTTGGACGTGGTTTTAATTCGG 76364 37 100.0 33 ..................................... CTTGCATTTTGATAAAAAAGATAAGTAGAGTAA 76434 37 100.0 35 ..................................... AGGAACAATTGTTCCTTAAGCCTATGCCCTCAGTT 76506 37 100.0 35 ..................................... GGCAGATAGTGGATGGGGCGGTAGATGTTCGGCAA 76578 37 100.0 33 ..................................... TACTCGCGATCGCTGCATCCTCAACGCCCAAAA 76648 37 100.0 35 ..................................... GTGGCTGGGACTAGAAGGGCTAGCCGAATCACTGG 76720 37 100.0 35 ..................................... TGGCAATACACGGGAGTAGATGATACTTCTGAGGA 76792 37 100.0 35 ..................................... ATCCAGTAGCAGTTCGCCCTCATCATTCCAGTAAG 76864 37 100.0 34 ..................................... CGGCGGCGCTGCGGCTGGTGGCGTACTCACAGAT 76935 37 100.0 36 ..................................... CTTGCCATTTTGACCTTCCATATTGAACACCCCAAT 77008 37 100.0 32 ..................................... ACCTCAGTTGCTCTGTTCTTGATTCCGCACAG 77077 37 100.0 34 ..................................... ATTTTAAAATCGGTGCAACCGGAGTTCGGCTCAA 77148 37 100.0 34 ..................................... GAGAGGCAGATCACCTTGTTCTATTAAGTGAGCG 77219 37 100.0 38 ..................................... AAAAGATGTCGATCAAATGAAGCGGATAAATAGCCACA 77294 37 100.0 37 ..................................... TAAGAAGGAGAGGTGATGTTAATTCACTTAGTGGAAC 77368 37 100.0 35 ..................................... AAAGACTTTTTAGCCGAGACGCAGGCAGGAAGAAG 77440 37 100.0 33 ..................................... AGCTTCAACGGCGGCGGGACTAGCTACATTCCC 77510 37 100.0 33 ..................................... AAAAGAAATTTAGCGACTTCTGCATTCTGTTCG 77580 37 100.0 35 ..................................... GCGTAAACTCTTCCGCCCTTAAATTGCGAGAAAAG 77652 37 100.0 34 ..................................... GGAAGCGTCGCTAAAACTCAAGCTATTTTAGAAA 77723 37 97.3 37 ....................................C GTGCTAGCCCTCTAATCTCTGGTATCCATCGCCCCAG 77797 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ============================================ ================== 29 37 99.8 36 GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAG # Left flank : AGAAGATAAACGCCGTACTAAAATTCACAAGGTTCTTAAATCTTACGGACAGTGGATGCAGTATTCCGTTTTTGAATGTGACCTGACACCTACTCAGTATGCTAAACTGCGATCGCGCCTAGCCAAACTCATCAAACCAGACCAAGACAGCATCCGTTTTTATCACCTCTGTGCTTGCTGTCAAGGAAAAGTTGAGCGCATCGGCGGCGAAATGCCAATAGACACTACCGTATTTTTTGCTTAACTCGTGCGTCAACCTATAGGTGTTGGGCAAACAAACTAAAATTTATCGTCCCAAACCCTTACCACTCATGCTTTTGAACCCTCCAACACCACAATTGAGGTTGACGCAAACACCCCAAACCTTCACCATAAATACTTTTGCACCAATTTTCTCCAACTCACTCTTGACAACTCAGCTTCCGAAAAGCTACCTTAATCTGAGATTGACGAAACAGAACCTTGAAAACCAAATACAGCAAGCTTTTCAGACCTGGACA # Right flank : CCTAATAAAATTGTTTTTTCTAGCAAGTCGCCTGAGGTTTATATTATAGGGTTTTTTAGTCTGCTGAAGTAAAAATCTCTGCGTACCTCTGCGCTTTACTCCGCGCCCCTCTGCGTTTCAAAATATTATCTGTACCTCACTTAACTGGAAATCGCTATAACACAAATCTCCATAGCATTTCCTAGCTGCTGAGGTACAAATTTATCCGCGTACCCTGCGGGAAGACTTCGTCAATATCTGTGTCCATCTGCGTTTAATTATTGTCATTTGTAATTCATTAGGATAAGAAAAACTATATTAAGGATTGAAACAATAGAGTTGGGATTTGCTCCGTAGGTTGCGTTAGTTTCTATTAATACAAATCCCTATCAAGGCTCTCAAATCTGTCAACAGCTATACCTTACTCTCTTTGTTCTCTTTCACATTATCTTGTTTGTCATCATTACCATTTTCTTGCTGTTTCTTCTCTTGCACAACCTGAGTAGCATAAACTTCTACAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 6311-6132 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZQ010000305.1 Trichormus variabilis FSR NODE_233_length_10579_cov_9.35488, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 6310 35 100.0 37 ................................... GGGGGCTGGGTCATCATATTGATCTCGCTCAGTCCGG 6238 35 100.0 37 ................................... ACGATCGCAACCCTTGATTCATGAAATGCTTGGTAGC 6166 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ===================================== ================== 3 35 100.0 38 GTGCTTTAACATTAGATGTCGTTAGGCGTTGAGCA # Left flank : TAGGTGAAAGTCGGGATTTAGTGAATGATGTTACCCTTTTACCTAAAAATTACTATGCAGAATCAATGCGATGGTTAATTCGAGATGAATATGGGTTACTAACTTTACCTTACTGGGTAGACCATGTAGGTTCGCGGGGAACGCGATGGCTACGTTACGAGATTCAGAAATGTCCAGTCTTTCAACCACCTGAATTATCTTGGACTTCAGTTCAAAGTAATTAGAGGATATCTTTACTTTTGCAAGCACCTCTGCTTGGGAAATTTAAAAACTATAGAAAGTAGCCTTAATTCGTTATTCTACAAGCCTTTTAAGGATTTTATATGCTTCTAGAGTGCTTGCAATTTCCTGGAATGCTCTAAATACAAGAGTTAGGAGTGTTAAAAACTTTACTTTTGCTATGAATAGCTATTAATTTTTGCAACTTGGCTAACCTTAAAGAGTAGGTGCTTGTAAAATTGATGTAGAGCTTAGGCAAGTCAGCAAATGTGGCTATCGCT # Right flank : GGATTCCCAGAGGCGAATGTATTTACGGGTTATTGTCTTTGCTAGAAATATGTTGTCAGTGAAGCCAAGATTAGCCCTCTTGATTACCATCATTCCGAGAAATTTTACTGAGAATTTTTTCCCACTGCTGAATCTGGTTCTGTATTTGTAATTGGGGATGGGCTTCCCCCCGCCGTAGGCGATCGCTCAAATCTTGACTATCATCAACAGACAAATCCTGACCGCTCAATCGCTCACGGTAAAGAGCAATCAGTTCGGTTAGGGCTTTTTTATTGCTTGATTATCCTCCTGGGTCAGAGAACTCACATTGACTGGGATCAGCTTTCTGCCAATTCTCTCGACAAACTCAGACCGACTTAAATCCATGCTGTCAGCGATCGCATCTAATCCATCAATCCCGGTAGGAGTTAGGGCTAGGTTAACTCTCTTCTTTACCTCATCGTACAGTTCTGGTACGTCTTTTTGACCTTTTTGCCCTTTCTTACCCATTGCCGTCTACT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTTTAACATTAGATGTCGTTAGGCGTTGAGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 7889-8139 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZQ010000036.1 Trichormus variabilis FSR NODE_51_length_32374_cov_11.0581, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 7889 37 100.0 34 ..................................... GCTTCACACATTGCCAAAGACAATAGACGTAGCA 7960 37 100.0 35 ..................................... CGATATGCTAATAAATACAACCTATGCCATAGAAG 8032 37 100.0 33 ..................................... GTGTTACTCCTTAAATCTGGATTTAAGCCACAG 8102 37 86.5 0 ........GA........A.A...............T | G [8127] ========== ====== ====== ====== ===================================== =================================== ================== 4 37 96.6 34 GTGACAATAGCCCTTCCCGTGTTGAGCGGGTTGAAAG # Left flank : AAAGCGCGAGATTTAGCGATCGCAGCTTACTATTTACGCCAAAATAAATCTTAATTTTTGATTAAGCAAATATACTGAACCTTGACAATAAAATAAGTAATAGCGCCGCAGTTCATGTTAAACCTCTGAACTGTGAAAAATCTGGGTTAGGTTGACTATTGGAAAATAGTCCTGCTTTCTGACCCTGGTAGCTGCTCACCCCGATGCTGCTGTTTCCGAACAGGAATTAGGTGCGCTCCCAGCAATAAGGGCGCGGATATACTGCTGTAGTGGCTACCGAATCACCTCCGATCAAGGAGGAACCCATACCAATCCTTGTTTCCAGGCATTAGAAGAGATTAAAAATTTTCAGTCGATTCGCGCTTGCTTGCTGTGAAAGGATTTTAGCGTTTAATGGCACAAAAATTGCTCATTCAAACGGCAGTTGAAGAAGCTAGGAATATAGATCCGCGCTATCAACTCTGGAATCCTCCACAAAACAAGGATTCTATACAGGAAGG # Right flank : TAATTATGTATGTATTCATCTCCATTAGGATGGGTGAGAGTGATAATAACCATTCACGAAAGAATGGATTGAAAATGTAATACCTAACGATAAACAGAAATAGGCAAGTTATATAAATCTTTCCGGTGCAGGACTGGTTGAAATATAAAGATTACAAGATGTGGGTATGGGTTGAAAGGGTTCAAATCCGTCTGCTTAACTTTTGCTGCCAAGCATAGTGGTTAGAATAATTGTGTGCGAAATAAAGAACAAAAGTTTTTTGTTTAACCAAGGTATAGCAAAAGTTTTTAGAGCTTGAGCTAAAATTGAGCTTATGGTCTTCTATTTGATAGGACTGATGTTGACCAATCACCCCACACAATCGATTAGTCTCAAATATTGCGACATTAATTTGTGAACGGTTATCTTAAATGAGCCGCGACACTAATTAGTGAAACAGCGACATTAATGTGTGAACGGCGACATCTAATGTGTGAATGTACAACAAGCTAAGAGCTTCT # Questionable array : NO Score: 2.69 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACAATAGCCCTTCCCGTGTTGAGCGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 17575-17393 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZQ010000004.1 Trichormus variabilis FSR NODE_5_length_68653_cov_10.2632, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 17574 36 100.0 37 .................................... GATTTTGAAAGGCTGCATCCATTCTAGATAAGTTGGA 17501 36 100.0 37 .................................... GACTACTCTCATCCAAAGGTACAGATGGTAGTGATAG 17428 36 97.2 0 ..........................T......... | ========== ====== ====== ====== ==================================== ===================================== ================== 3 36 99.1 38 GTTTCAACGACCATCCCGGCTAGGGGCGGGTTGAAA # Left flank : TTTAATTCACTAATCTGAACCTTGAAAATATAATATTTGTATAACAGCGCCGCAGTTCATGCTCTTTTGAGCCAATGTACTGTGATAAATCTGGGTTAGTTTGGTAGTTAGAAGACTGTCATGCTTTCTGACCCTGGTAGCTGCCCGCTTCTGATGCTGCCATCTGTAGAATTCTATAGATGGGATAGGTGCGCTCCCAGCAATAAGGAGTAAAGCTTTTAGCTGTAACTGTTATTTATAACGGTGTGGATTACCACAGTGGTGGCTACTGAATCACCCCCTTCGTCGGGGGAACCCTCCCAAATATTTTTTTGGCGAATCGAAGCGGGGTCAAAATCCCTGGGGACTTGCCAAACTCTGAAAACCCTTGTCCTGTATTAAATCAAGGAATCATCTTGTCAATTGATTTATTTTTTTGATTTTCGGCACAAGCAGCTTTTTCAGGGACGTGTCAATTAGACATCTGAAAAGCTTGTATAACAAGGGCCTAGACGGGAACA # Right flank : AAGTTACAGTTATTAGGTGGGTTGAAAGTAGTAAATGCTTGTTATTTTAGGTTTAGACCTCAAAAAAATTACAGATATAACTTCGAGAGCTAATGTAACCAAAAATAATACTTAGCCCAGTGGAGTGCTACTATGTAACTGCATAGAGGAAAAGACGATGACAAATAATTTGTCGCTATGATATTTATGACAAATATTTTGTCGCTACAGACAAATAATATGTCGCTCTACATATAACCAACAAAAAAGGCTTGGTCGGGCCAAGCCTTTATGTATACCAAGCATTTACTACACCAAGCTTAATTTAAACCCTCTAGCACTTTAGTTCATCTGTCTTTAGACTGTATGCAAATTCTTTCAAACCTGGTATGAACTGGCATATTTACATACAAAAAAGGCTTGGTTCAACACCAAACCTCGATAATTGCTGTGCTTAACAACGTACTAAATTAATTTAAACTGGATTGTTGTCCTTATCATCTTCCTTTAGTATGTGTTGC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACGACCATCCCGGCTAGGGGCGGGTTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 23818-26321 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZQ010000059.1 Trichormus variabilis FSR NODE_49_length_32918_cov_10.5214, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 23818 37 100.0 34 ..................................... TTGTGCGTCTTTTAAGTGGGGGATATAAGCGAAT 23889 37 100.0 37 ..................................... ACGGTCAAGGCGAAACCATACTGCACGCCCCTAGTGG 23963 37 100.0 38 ..................................... TAGCGATATCACAATAACTTTACCAGTGGTAACTATTG 24038 37 100.0 33 ..................................... TTTGCTAAAGCAAAGACTCAACAAGAAAGTGCT 24108 37 100.0 36 ..................................... TGAATGGCAAGAACTAAAAACTTATGTTTTTGATAA 24181 37 100.0 35 ..................................... TAAAAACACTTCTCCAACTGGAGGAAGAACCATTA 24253 37 100.0 36 ..................................... ATTAACTGAAGCCGTCCCCAGAGATTTTGTTTAAGC 24326 37 100.0 34 ..................................... TGCGATCGCGTCTCTTAAGACTTCGGACTGGTTT 24397 37 100.0 38 ..................................... CTTCATCACCTCCTTAGCGGTCGATACGTTCTTGTTAA 24472 37 100.0 35 ..................................... CAATAAAAAGACAGGTGTACTTATGACGTTTAGAA 24544 37 100.0 38 ..................................... ATTCTTTGTATTCTCTCAGGATGAATCAGCCTCACCAC 24619 37 100.0 36 ..................................... CTCAGGTATCTTTCCTGAGCGAATCTACGGCGTATA 24692 37 100.0 37 ..................................... AAAAATAGCTGAAGCCGCCAAACGGGGGAATGATGCA 24766 37 100.0 34 ..................................... AACGACCCAGATAAAGCCAGCACAACAACCGCAT 24837 37 100.0 34 ..................................... GAATGGATGATGCTTCTTTGTACCATTTAATGGC 24908 37 100.0 33 ..................................... CTCAGTTGCCACCAAAGAGGCGGGGTTTATTTT 24978 37 91.9 37 T..................A.....T........... TATCGTATTTTTTCTATTAATTCTATGCTTTGTTCTG 25052 37 100.0 34 ..................................... TTTGTATACACCCGCCTTCTCTGCCTGTAATCTG 25123 37 100.0 35 ..................................... GTTTTTTTTGTACGAATCCTAGATAAATATTTATT 25195 37 100.0 36 ..................................... TACCCCCTGGCATCCCCCACTGGTTCTTCCCTGGCA 25268 37 100.0 38 ..................................... ATCTTGCTTGGTAAATCGATGCGGCGGAAATTTGCCTT 25343 37 100.0 35 ..................................... AGACGGATACATCGAGTGGGAGCTTAAAAATCCAA 25415 37 100.0 33 ..................................... TACCACGGTAACAAGTCAAGCGATCGCTGCTAA 25485 37 100.0 31 ..................................... CTCCAAGGTGTATACTATCAAGTATTTTTAG 25553 37 100.0 36 ..................................... TGTTCCTGGGTTGGTGGGGAATGCCTTAGTATTTTC 25626 37 100.0 38 ..................................... GCATCTTGGGTGGCATTTGCACCAAAAACTTGAGTTAG 25701 37 100.0 36 ..................................... CAGGTATAGAAACACCTGTAGTATAGGTTTTACTAG 25774 37 100.0 38 ..................................... GCCAACCAACTTGCCACACTCAGGGATCGTTCTGCTCA 25849 37 100.0 36 ..................................... ACCTAAAGAAGCTTTAAACGAGATTGTGAAAAAATA 25922 37 100.0 34 ..................................... AAAAACTTGCAGAATGGAAAAACCGCCAGCGCGA 25993 37 100.0 33 ..................................... AAGTTTTCCATTTAAGTGCTAAAGCAATAACAA 26063 37 100.0 34 ..................................... TAGTTATACAGAGATTATCAAAAGCCCCTGCATA 26134 37 100.0 38 ..................................... TAACTACTCTAAATAGTGAAGCTGTAAAAACTTCAGGA 26209 37 100.0 39 ..................................... TTAACAAAGATGGAAAGAAAACAAATACTTTCCATGTAA 26285 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 35 37 99.8 36 GTTGCAACACCACATAATCCCTATTAGGGATTGAAAC # Left flank : GCTATTGTCACACTTGCCAGTAACTTGGAAATGAGTGTAGTGGCTGAAGGTGTAGAAACAGTCAACCAGTTGGTACAATTACAGTTATTAAAATGTGACCAAGCCCAAGGGTATTTGTTCTCAAAACCCTTAAGTAGCGACAAAGTTAGCTTGTTATTAGCTGCAAAAACACAATATTAGAACACAAAATCTTGGCTTATCCGCCATATTCAGTTTGGAATCAGAAAATTTTACGGAAACAACGAGCGATCGCGTCAACCTATAGGTGTTTTCCCGTTAATCTCAATTTTTATAGCTTAATGCCTTATCCTCTATACATTTGAACGCAGTTGACCTCTTTCCTGGGTTGACGCAACTCCTGAAAGCCTTGCTATGACTAATTTCTAGTATTTATTCTTATTGTTCCTCTTGACAACCCAATGTCTGAAAAGTTATCTTTGCCACAGATTAACGCAACTGAACCTTGAAAACCAAATACAGCAATACTTCGGCAACTAGTC # Right flank : CAACATGAAATTTCAAACTCTTTATCCTCTCTGCGTCTGTGCGTGATAGAAATCATGCCGCATTGCATTGATGCAACGCCCAAGCCCCGATTAAGTCTTGACTTGTTCCCTGTATACCCTGGGTGTAATACCCATGAGTTTACGAAATACATTTGTGAAGTGGCTTTGGCTTTGAAAGCCGACTTGGGTACATATTTGCTCTATGGTTTTGTTAGTGCTACCCAGTAACTTTTTTGCGCGTTCAATTCGGCAATTCATGACATATTGATGTGGTGCAAAACCAGTTGATTGCTTAAATTGGCGCGAAAAATAATACATACTCATTCCTACTGCTGTGGAAATATCAACCAAAGTCAAATCTTGATCAAGATTTTCATGAATGTAGGAAATTGCTTGTCTGAGTTTCCAATGTGAAAGTCCTTTATGATGATGGTCGTCAAGGATGGTTCCACCTGTTACACAATAGTGTTTGAGTAGGTGAATACAAAGCGTGGTCGTCA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACACCACATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 30-219 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZQ010000514.1 Trichormus variabilis FSR NODE_714_length_241_cov_0.896341, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 30 37 100.0 43 ..................................... TCAGCTTTTGATTTTGAGCAATTAGCTGTAATTGCTATGGGTG 110 37 100.0 36 ..................................... TTTATAAACCTGTATCCCCTGCTAGTTGGTACAGGT 183 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 3 37 100.0 40 GTTTAAACTTCAACTAATCCCTATTAGGGATTGAAAC # Left flank : CTTTAATACATTGCTTGGATTATGTTCTAG # Right flank : GGGTTGATAAGTTGATTTGATT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACTTCAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.40,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 12859-9999 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZQ010000116.1 Trichormus variabilis FSR NODE_96_length_22509_cov_10.4734, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================================================================================================================================================================================== ================== 12858 37 100.0 34 ..................................... TGGTTTTTCTCGCGTTATGAATGTTTTTGCTTTT 12787 37 100.0 34 ..................................... AACGTTATGCCACTTCAAGGCAATAGCTTCCGAC 12716 37 100.0 32 ..................................... CTGCGGTCAATTGCCTTTGTGCATCAGTTTGA 12647 37 100.0 34 ..................................... CTAACATCGCCCTAGCTAAACCAATTAAATTCAA 12576 37 100.0 39 ..................................... TAAGGTTGAGCTAACTAATAAACCGCCGGAAGAAATAAC 12500 37 100.0 34 ..................................... TAACTTATTTCTAACTAGTAACTGAAGTTGATAA 12429 37 100.0 34 ..................................... CAATAATTATTAGTATTATTTCCATTTTCCTCCT 12358 37 100.0 34 ..................................... CAGTACAAGATGCTAATACAATTACTATTCAAAA 12287 37 100.0 40 ..................................... AAGCGTAAATCCGTTTTTAGCAGGTACATCTGGGGCAACG 12210 37 100.0 33 ..................................... AGGAACAATTGTTCCTTAAGCCTATGCCATCAG 12140 37 100.0 36 ..................................... CGAATCCCATCCTCTCCGTTATTCCAGCGATTTTAA 12067 37 100.0 36 ..................................... CAAACCCTTGCTGTATATGACTTGATCCAGATGATC 11994 37 100.0 36 ..................................... CAATTAATTTGGAATGTTGAAAGCTTTCATGGCTTA 11921 37 100.0 34 ..................................... ATGCTTAGTCTTCCGCTACATCACAGAAAGACTA 11850 37 100.0 38 ..................................... TTAGTTTTTTCTAGCTCTTGTTGTAGGAGTTGAATTTG 11775 37 100.0 34 ..................................... AGACTAGTCCCGGCAAAGTGGCGGAAACAGGAAC 11704 37 100.0 37 ..................................... TGCGGCAACAGTACATAATGCTTTTCAACTTTCAAAT 11630 37 100.0 33 ..................................... TCTTTGGCTTTTAATTCATCTGGTTCTGGTGTC 11560 37 100.0 35 ..................................... GAAGCATCTCACACCAGATGGCAAACTACAGCAAC 11488 37 100.0 36 ..................................... ACTAGTACACCCTGGGTGGCTAGAGACACGCTAAGA 11415 37 100.0 34 ..................................... AATTATTTTCTTGATTGGCTGCTGTATGGCTTTG 11344 37 100.0 37 ..................................... AAGTCGGTAGTGATTTTAAGAAAGTTATCCTCTGCGG 11270 37 100.0 42 ..................................... TTAGCTTAAGCCTATCCCTGACTATTCCCAGCACTTTATCAA 11191 37 100.0 34 ..................................... AGCAGATGACCACTCAGACCAAGGACGCGGAGAG 11120 37 100.0 33 ..................................... CAGGAATTGCAAAATCTTCAGGTTCATTAGTGA 11050 37 100.0 34 ..................................... CTATATAGTTGTTTTGGATCTAGGTCTAAAAGTA 10979 37 100.0 35 ..................................... TAGAAAAGCTTGGTCAATGTCTCAAGAACTTTGGG 10907 37 100.0 34 ..................................... CATTAAAATTCAAAAACTAGGTGCAGACGATCGC 10836 37 100.0 34 ..................................... CAGAAAAAAGATAGAAGCCGATTTGCGGGAAGAC 10765 37 100.0 34 ..................................... CGCCTACGAGGGTACAGAGTTCGCCCCCATGAAC 10694 37 100.0 35 ..................................... ATCGCTTAATTGTTGCTGTACTAGTGATGCGGCTA 10622 37 100.0 32 ..................................... AGCGCCTCTGAGGTTAGCGCTTCTGAGGTTAG 10553 37 100.0 34 ..................................... CATTAAAATTCAAAAACTAGGTGCAGACGATCGC 10482 37 100.0 34 ..................................... CAGAAAAAAGATAGAAGCCGATTTGCGGGAAGAC 10411 37 100.0 34 ..................................... CGCCTACGAGGGTACAGAGTTCGCCCCCATGAAC 10340 37 100.0 35 ..................................... ATCGCTTAATTGTTGCTGTACTAGTGATGCGGCTA 10268 37 97.3 196 ....................................T GGCGCAGCTAGGACACTTGATTCTTCCATTGCCTTGTTTTAGTGTTAGTTCGACGAAACCTAACCCCAACCCCTTCCCTACAAGGGAAGGGGCTAAAAATCCACAACCAAGTACCAAATAATCAGGGTTTTAAGCCTCTCCCCGCGTCGGGGAGAGGTTTGGAGAGGGGTTATTCCGAATTTATCAAACCCACGTT 10035 37 89.2 0 .......C......................C....CA | ========== ====== ====== ====== ===================================== ==================================================================================================================================================================================================== ================== 38 37 99.6 39 GTTTTAATTAACAAAAATCCCTATCAGGGATTGAAAC # Left flank : TGAAAGCATTACAGGATTTACCCTGTAATTTGCCACCGATTTTAGTTATTGACCAACAATTAAGTCGCACTCAAGTTACTTCTCGCAGTAGACTGACTCATCATAAAAAGCAGGAGTCAGAATCCATCACAGATGTGGCAAAAGCGATCGCTACCCAAATTGTCCCACGTTCCATCTCAATGGAAGACCTGTTAACTCAAATTCATCAAACTTTGACTCTCAATGAACGCTAAGGAGTGGCGAGGATGAGCGTCAACCTCTAGGTGTTTTTTTCCCAGTACCAAATTTTACGGCTGAAATGCTTATGCTGTAAGGATTTGCATCTGTTTGGCTTCAGTACGAGGTTGACGCGATCGCTTGAATCTCTTACCAGGGTAGCTTTTTCGCTATTTTTTAAGCTGCTACTCTTGACAACTCAATGGCTGAAAAGCTACCTTAGGTTCAGATTGACGCAACCGCACCTTGAAAACTAAATATAGTAAGCCTTCTAGACCCCGGCT # Right flank : AACTCTTAATATCACCTGTACCTACAGCCGCTTTACATAGAGTTTTAAAAAACAAACCCCGACTAATTATCTATTTAAAGATAGAGGGTAGAATACTAGGAGCCAACCATAAACCGTAACCAATAAATGCAAATACGGCTGTAATGACAGCAGTAACGACATAGCTGAGGCAAATTAGTAAACCATCAGATTCAATTGTGGCGATCGCTAATAATAAAATACCTACAGTAGGTATCGGGTTAGTTAAGGGAATTGGTGAGATGAGTAATATTGTCAACCAAGATATACAAAACCCATTGATACGCCAAGTTAAAGGGTTATCAGCAATTTTACTTAAGCGGGGACGGGCAATTTTCTCTACAATCTTGGTGACACGCCGCAGATTTTGAAGAAGAAACTGGGCAAAAGGACGGGGGAATTTATAATGAGCGATTTTTTTAGGTAGCCAAGGCGATCGCCTACCCAAAACCATCTGTACCGATAATATCAGACAAGCAGCA # Questionable array : NO Score: 8.83 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:-0.40, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTAACAAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 14572-16990 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZQ010000103.1 Trichormus variabilis FSR NODE_119_length_18430_cov_9.48047, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 14572 37 100.0 33 ..................................... ATACCTAGATTCCCACCGAATACAATCCAATTG 14642 37 100.0 37 ..................................... AATTCATTAAGCCTAGACGATCTTGTCTGCACTCGAT 14716 37 100.0 44 ..................................... GATGAGCTAATTTCCAATGCCAGTCTTTACGACGGTTGGCGATG 14797 37 100.0 34 ..................................... AGCAATTCTAAAATCAGCCCGCCACAAGCAATTT 14868 37 100.0 35 ..................................... GTCAATTGGTTTAAGTTGTAGCACTCCTATCTTAT 14940 37 100.0 35 ..................................... ATCGCAAGAGATGTAACGCCTAAGAGTAAAAAAGA 15012 37 100.0 36 ..................................... GTAAAAATCATGATTTTTACTATTGAAAAAATCCTG 15085 37 100.0 39 ..................................... CAATTTAACTTATTTGATAGTGATATCTATCGGTATATA 15161 37 100.0 35 ..................................... AAAGAAGTTGCAAGTAGAGCTAATTTAGCAATCAC 15233 37 100.0 41 ..................................... ACTATGTATGGGGGTGAATATTAGTGGCATTTCGTCCACCC 15311 37 100.0 34 ..................................... ACTATTCTCTGCCGCTAAATCAAAAACAGAGCTA 15382 37 100.0 35 ..................................... CAACTTACTGGGACAACCGCAGCAACCACCTTAAT 15454 37 100.0 33 ..................................... GAGTTGGTTCGACTGATAGTTGATTTGAACAAG 15524 37 100.0 33 ..................................... GCACCTGAGATGACGCAAGCAGCAAAGGCAAGC 15594 37 100.0 32 ..................................... AAAGTTGGTTCCGCCATAAAACTGATTTTTGA 15663 37 100.0 34 ..................................... GGGAACGCGCCCTTAAGGTTTATGAAATTGTCTA 15734 37 100.0 33 ..................................... TAAATCGGTCGAGCTAGTAACGCTTCGGCTTGC 15804 37 100.0 34 ..................................... AGTGGTATCTTTGGCACAATCTTCAGGATTGTCG 15875 37 100.0 33 ..................................... CGAGTTACCGCCCCTTTAATCGGTAGGGACAGG 15945 37 100.0 33 ..................................... GGAATCAGGGAAAGGGTTAGGACCTGCAAGATT 16015 37 100.0 35 ..................................... AGCGAATTAACACTTTATTAACCTTCTCTATTTGT 16087 37 100.0 35 ..................................... TAAATTCCTTAGCTAAATCCAATAAGGCCAAGGAA 16159 37 100.0 33 ..................................... TATGGAATCCTGGCAACCTACGGGCTGAGGAAT 16229 37 100.0 36 ..................................... AGAAGACGGGGAGGAGGAGAAATGCAAGCTAAAACG 16302 37 100.0 34 ..................................... CTGGATATTTATCCAAATGCCGATCCTCTATCGA 16373 37 100.0 33 ..................................... AGCTGCGCGACATCGCCAAGTATTACAAAATCC 16443 37 100.0 34 ..................................... CTAGCGATCGCCGCCGCCTTTACCCCTTCTAAAT 16514 37 100.0 36 ..................................... CCTATACAGGGTTCACAAACACTATCCAATCTAGGG 16587 37 100.0 42 ..................................... AAAAAATCCAAAAGGGCATATATCTCTTTGTATCGATTCGAT 16666 37 100.0 34 ..................................... AAGTAAGCCAATACTGAAGTTTTCGTGTTATATT 16737 37 100.0 35 ..................................... CAACCCAGAATCGGCTTATCATACACCAGAGATAA 16809 37 100.0 37 ..................................... TCCTTAATTGACTCTAAAGCACTATATACAATATCAA 16883 37 100.0 34 ..................................... GCAACATTCGTTTCTACAATAATATTGGTGTAGC 16954 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 34 37 100.0 35 ATTGCAATTAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : AAGATAAACCAATCAAATATCCCCATATGTTCCGTGCTAGTGAGATTATGATTCTCACTAAAACTGATTTGTTACCTTATGTGCAGTTTGATGTGCAGCGTTGTCTAGAATATGTACAGCAAGTAAATCCCAATATGCAGGTTTTCCAAGTTTCTGCAACTACAGGTGTGGGATTAGATACTTGGTATCAATGGCTAACGCAGAAAGTAGCCAATTCTCCACAACCAGTAGTGATGTAAGCAGTAACTTTGCGTCAACCCATAGATGTTTTTCCAAACTTATGAGATTTTCTGCTGGAAAAGCTTATCCCCTATGGGTTTGAAGTGGTTTTGACTCGCTATGAGGTTGACGCAATCACCAAATCTCTTACAGTCACTGATTTCCACATATTTTTTAGGTACTACCTCTTGACAAAGCGATCGCTCAACAGCTACCTTAGTCACAAGTTCACGCAACCGCACCTTGAAAACCAAATATATCAAGCTTTCCATGCCTGAGCC # Right flank : CGTAGGAAAAAATAGATTTGTTGTACTCGCAACATTGAGTTCCAATTAATACAACGCGAATCCTTAGCCCCTAAAATCGAGAAATATTGCAACTCTTCATCAAAAAGCAATAACAAAGCAACAAAACTGTCATAAATGCTATCTAAAGTAATAATAAACATAGTTTCCTCGCTCAAGGCCATGCAAAACCAAGTACACGATGAATCTCAACCCTTAAATCCTAAAAACCAGAATCACGCACCTTGGAAAAAAGCGGCTGCATCTCTATCACTAGTACTGCTGGGATCTGGTATGACTTTAGCTGGTGGATATTTAGCAGGAAACCAGCAACAATTGGCACAAAAAGCATCTGACTTGGCCGTGAGCCGAGTAGATGCAGCACCGCCATTAGGAAATAACACAGACCCCAACTTTGTAACTCAAGTAGTACAGAAAGTTGGGCCGGCTGTTGTGCGTATTGAAGCGTCTCGGACTGTCACATCTCGATTACCAGCCGAATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 6102-9135 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZQ010000011.1 Trichormus variabilis FSR NODE_12_length_55619_cov_10.155, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 6102 37 100.0 35 ..................................... TTAAAGACTGTACTTCATAGGAGATTTGAGATAAA 6174 37 100.0 34 ..................................... AAGTGTACAGGCAATAGTTATTCCTATCGTGATT 6245 37 100.0 34 ..................................... CTGACGCTGTAAATAAACGCGCTGGTAATCCTGG 6316 37 100.0 34 ..................................... GCGAGACTTGCAATCATCTGGTAGCTCATCTGAA 6387 37 100.0 32 ..................................... ATCATTAGGGGTGAAAACTATATATAAAGTTG 6456 37 100.0 37 ..................................... GTAATCAGTTGAGTACCCAGTTGGAGGCGCTGCGGTG 6530 37 100.0 35 ..................................... GAGTACACTAGGTACTAAAACAATCCACCACCGAT 6602 37 100.0 35 ..................................... TTCTTGGAGACTTAGACGACTCCATAACATTACTG 6674 37 100.0 34 ..................................... AGGGGAAAAATGTTTTTCCCTGCTTAGTGATAGG 6745 37 100.0 34 ..................................... GTCCGCGGGTTTAGATTTGTACTGAAATTCCACG 6816 37 100.0 32 ..................................... TTTCCCATCGTAGATAAATAGTACCTATGTTA 6885 37 100.0 33 ..................................... TACTCAATAGCTGAACAAGCCTCAACAAAGACA 6955 37 100.0 34 ..................................... ACATGATTGATAGTCTTTGTTGGCTTCAGATTGT 7026 37 100.0 34 ..................................... AAAACTAGTGCCTTGCAGCATAGCCGTGAAAGAG 7097 37 97.3 35 ......C.............................. CGCCGATTACTCAGCAACCAATATCTCAGTCAAGT 7169 37 100.0 37 ..................................... TTTCTGAGCTTCAATTTGAGCTATTTGATCACGTAGA 7243 37 100.0 33 ..................................... AGAGAATCAACATATTGCTGACACCCACACAAA 7313 37 100.0 33 ..................................... GAGTATTTTAATTAAAAATGAACTTAATTAGAG 7383 37 100.0 36 ..................................... AATCCCTCTGCACCACCTGGAATAACCTTAACCCTT 7456 37 100.0 34 ..................................... TAAAGAGGAAAGGATTGTAACTGTACCTGCTTTA 7527 37 100.0 33 ..................................... ACGCAAAAGGCAGCTATGTAAAGTCTGCTACGA 7597 37 100.0 34 ..................................... TACTTTCTTGCGTAAGTTGAAATACGAAACATCA 7668 37 100.0 35 ..................................... AACGTTATGATGGGTCTGGCAGTTCTTCTTCTGGG 7740 37 100.0 36 ..................................... ATATATGATAAATGGGCTGAGAGTAACGGTGAACTA 7813 37 100.0 38 ..................................... CGGGGAAGCTATCTCAATACAGGAGAAAAAGTTCATCC 7888 37 100.0 34 ..................................... ATTTTGAAGCTTAAATTTTACGCCGGAGGGTAAT 7959 37 100.0 36 ..................................... ACTCTCAAAAAGAGTACGCTTTTTTAATTCAACAAA 8032 37 100.0 35 ..................................... CCTGCTTTGCATCTTCATTTAGTAGTCGTTTGTGA 8104 37 100.0 33 ..................................... TAACTCGGACGACTTACGCATGGTAACTTTGGC 8174 37 100.0 34 ..................................... CAAACCCTATGTTTCTAAAGTTAATCCCTTTGTG 8245 37 100.0 34 ..................................... TCCGACCAAGAACCGCCAACTTCTCCGTAATCTG 8316 37 100.0 34 ..................................... TTCATTGTGTTAATCGCTAGCCACTGAAAATCAT 8387 37 100.0 35 ..................................... GTAATTATCGACGTTAATACCGTCGTGTATAACGA 8459 37 100.0 34 ..................................... AGAGCATCTGAAGGCTGAAAGTATAGCCAAAGCC 8530 37 100.0 37 ..................................... AAGAATCCTAAAGAACGCCAGAAAGCAAAGATTACCG 8604 37 100.0 34 ..................................... CGAAACGGATATTTTGTTAACAAATCCTGACCTA 8675 37 100.0 33 ..................................... GATGCTAAAGGCAAGGTTAAATCCCTATATCGT 8745 37 100.0 32 ..................................... ACTGGTGCATATCCATGTTTCTCTGCTATATC 8814 37 100.0 34 ..................................... TGGGCGAGAAAGCTTGATGATTTTCTAGAAATAT 8885 37 100.0 34 ..................................... TTCTTCCCAGTATGAAAAGCCAATGGCGGAAACG 8956 37 100.0 33 ..................................... CACGTATTACCAACAGCACAAAGACCGCATAAA 9026 37 100.0 36 ..................................... CCAATATATCTGAATATTGTTTCTTAACCGTATTAT 9099 37 94.6 0 ................................A...T | ========== ====== ====== ====== ===================================== ====================================== ================== 43 37 99.8 34 GTTAAAACCCTCTAAAATCCCTATCAGGGATTGAAAC # Left flank : CCCCTTTGGCAGAAAAGGGGATTTATTTGGTTTTCTCTACGGCTTACCACCAAAATTAAACAACGGCGTATTAATACCCACCGCAGATACTGGCAATTCCACTCACTACGAAGTTTTTTACCGCTATTTAGTCAACGACAACATCGCCATTACCCCTGGCTTTTTTCTCGTCACCGACCCTGGTCATATTTCCAGCAACAATGATATTTTCATCGGTGCTATCCGTACCACCTTTAATTTTTAAAATATTGCGTCAACCCATAGATGTTTTTCTGCACAGCTTCAGTTTTTTGCCTCTATGCCTCATCCTGATTAGGTTGCAGCCCATAACATTAAAATTGGGGTTGACGCAATTACCTCTAACCTTCGCCATAACAGCTTTTGAGTTAATTTTTACCATACGCTTCTTGACAATCCCATGTCTGAAAAGTTATCTTGGCTCCATGTTGACGCAACTGAACCTTGAAAACCAAATACACCAAAGCTTTGAGAGCCAAGCG # Right flank : TGATTCTGCTGCGTAAGTACTCTCAACAACAACCCTGACTTTGCGGAAAACCCAACAGGGTAGCCAAAGCAATACCTAAAGGCGATCGCCCAAAATATCTACTCATTCTTTTTGTGTAGAAAATTAAACCACTTACTTCTAGGCAACTAATCAAAGCGCGAGTATAAAAGAAAAAACAAACACAAATTAATACCTGAAATTAACAGAGAAATAACATGGCAAATCGCTCGCGCAAGCTAACGCCAAAATCTTCTAAGCAAAATGGCTCTGATTTGGAAGCGAAGAAACCTCAAATCCAGCAACAACAGGTAGGTAATACCGATTTGCCAAAAGAAGGTGATGGAGGAATTAATCAAACCCAGATACAGAAAGCGATTTCTCCATCAAAATCCTATAAACCATCCTCAATAATTGCGATCGCCATTTTACTTACAAGTGCTGGCTTAGTGCTGAGTTGTACCTGGATTGGAATTCTGTGGATATTTAACCCAGAACAGGTA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAACCCTCTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //