Array 1 255363-253076 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYVR01000004.1 Salmonella enterica subsp. enterica serovar Montevideo strain 10TTU89b1 NODE_4_length_278590_cov_14.9043, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 255362 29 100.0 32 ............................. AATGCGTTCATCGGGGATGGCGTGGCATCGGC 255301 29 96.6 32 ............................A GAGCGTATCTGATCAATGGTATTTGCATAGTC 255240 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 255179 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 255118 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 255057 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 254996 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 254935 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 254874 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 254813 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 254752 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 254691 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTT 254630 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 254569 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 254508 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 254447 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 254386 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 254325 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 254264 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 254203 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 254142 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 254081 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 254020 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 253959 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 253898 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 253837 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 253776 29 100.0 32 ............................. CCCGCAATCTGCGGGCGTTCTCGTCAATTTAC 253715 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 253654 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 253593 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 253532 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 253471 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 253410 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 253349 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 253288 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 253227 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 253166 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 253105 29 96.6 0 ............T................ | A [253078] ========== ====== ====== ====== ============================= ================================ ================== 38 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 273373-272125 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYVR01000004.1 Salmonella enterica subsp. enterica serovar Montevideo strain 10TTU89b1 NODE_4_length_278590_cov_14.9043, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 273372 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 273311 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 273250 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 273189 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 273128 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 273067 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 273006 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 272945 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 272884 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 272823 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 272762 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 272701 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 272640 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 272579 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 272518 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 272457 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 272396 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 272335 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 272274 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 272213 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 272152 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //