Array 1 1054213-1056211 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082237.1 Caldalkalibacillus thermarum TA2.A1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 1054213 28 100.0 37 ............................ TTCTTGATATGATGCACCATTTCTTCACTCTTTTTGA 1054278 28 100.0 38 ............................ TGCGGACCCTGTGATCTGTGCCTGGCCCATTTGTATCA 1054344 28 100.0 39 ............................ TAACTTTGTACTCCAGCACCCTCAGCCGTTCATCCTTTG 1054411 28 100.0 37 ............................ TGGATGCCGGATCCTGGCCGTGTACCCGAAGGACATG 1054476 28 100.0 38 ............................ TATAAATAAACCATCTAATTACATGATAGCACAAGGAG 1054542 28 100.0 37 ............................ TGGGCTTTGGCCCGCAGCTCTACAATGTCGGGAATGT 1054607 28 100.0 39 ............................ TACAATTCTACCGCAAATTCATTAGCTTCCCTTTCCACT 1054674 28 100.0 36 ............................ GGGAGGATCGTGCTCGCATGGCAAACAACTGGGGCG 1054738 28 100.0 37 ............................ GAGCGGCATACTCCAGCACTCGCAATCTTTCTTCCAT 1054803 28 100.0 39 ............................ GTATCAGGAACGAGAAAAAAGAGCGACTCATTTCTGTAG 1054870 28 100.0 38 ............................ GTTGTGCGAATGTTGACACCCATCCTGGCAGTTCTATC 1054936 28 100.0 39 ............................ GAAATATATTGTGTTTCCTTTAGATTCTCCATTTTCTAT 1055003 28 100.0 37 ............................ GATCAAACGCTACAAGCTATGTGCTCAATGTCCAAGT 1055068 28 100.0 38 ............................ GTACTGGCGGAGATGGAAAAAACCATCAAGGAAAACGC 1055134 28 100.0 37 ............................ GAGCATTGACCCCTTGATTACACATTCCCCGTCAACC 1055199 28 100.0 37 ............................ GTTGTCGATGATTGATTCTTGGTTTTGTGCAATGATG 1055264 28 100.0 38 ............................ GTCAAAGGTGATGCTGGAATATGGGGAATGGACAGGGG 1055330 28 100.0 37 ............................ GTTTTTTGGTCACGCTAAAAGCGTGATTGCCGACATT 1055395 28 100.0 38 ............................ GGAGGAAGCTCTCAACGCCCTGGCAGACGTGATTGCCG 1055461 28 100.0 38 ............................ GAGGGTAGTCCGCTCTGTCCGCCTGCATAGCTTATATC 1055527 28 100.0 37 ............................ GTTGTTCTGATTCGGGGTGTACGGGCCGGGGCCGAAA 1055592 28 96.4 37 ....................A....... GTTTCAGAGCAGCACCGACTGTCAGCGTCACTTTCTC 1055657 28 100.0 38 ............................ GTTGGTGATCACTTCTGGATTGTAGCAAAGTTGAACAG 1055723 28 100.0 39 ............................ GGGACGTTGCGAAGTTTGCAACTGAGCGTTGCCTAGTAG 1055790 28 100.0 37 ............................ GCTGGCGGTTTGATACGCAGCATAAAGCCGCTTTGGC 1055855 28 100.0 37 ............................ GTTCGGTACGAGATAGGAAAGCCTTTGCTCGTTCCAG 1055920 28 100.0 38 ............................ GCCCTGTTACTTATAAACGAACCAATTAAAACATACAG 1055986 28 100.0 39 ............................ GAAAGGAAAAGTTGTCGAGCGACACGGGGATCTGACCCT 1056053 28 100.0 37 ............................ GTTTTTTTCTAGCAAATACTTTGCATAATCACATTCG 1056118 28 100.0 38 ............................ GACAGAGACAAAAAAGCGATTAAGACAGGCAACAAAAA 1056184 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================= ================== 31 28 99.9 38 GTTTTATCTGAACTTAGTGGGATATAAA # Left flank : GGTGGTAGTATGTTTGTCATCATCACATATGACGTGAATGAAAAAAGAGTACACAAGGTTTGTAAAAAGCTGAGAGAATATTTGTTGTGGACACAAAACTCCGTCTTTGAAGGGGAGCTGACAAAAGGTAAATTGAACAAGTGCCTGGCTGAGCTTGAAAAAATAATAAACAAGGAAGAAGATTCGATTTACTTGTATACGATAGAGAATCCAAGACATTTGAAAAAAACAGTCTTTGGCCAAGAAAAGTGTAACGATGACCTCTTTCTTTGAATGTATTGGTTAAGATGAAGACATGAAGGTGTTTAGTTCACTGCCGTAAATCCTCTGGTTGGACCAAGAGGCCGTGAACTGTTGTGCTTGTTGGGTTTTTAAATGATTAGACCTTTAAATTGATAAAGAAGACTTGCGATTTACTGCAAAATGGCGCTCTCTTGGTGTTTCAGCATTCTACTCAATTCCTTGGGCCACAAGGGATTAAAGATTTCGCTTTAATAGGG # Right flank : AGTTTTTCAACGTACACCGTGTCATAAATCACATCATCGTTTTATCTGAACTCAACTTTCGCAGACAGAAACACCGAGTAAACCCTTGATATAATTGGGCAAACTCGACAAAAACTGATCGAAAAGCTCTTGAAACTTCTCTTCCGTAAGAACTAGAACTTCCCGTACCGCAGATTTAAATAGTTCGATCAAAAGCAACAATGCAGAAGCAAATTTGATGTCCTCCATCTCGTCACAACAAAGGGAAAAGAGCTCTCCCAATGTACGGGGATCCTGGCTCTCTCTCGATTCCACCGCCAAGAGTATGTACCGGGCAAAAACGATGCTGGTATGGGCAAACATCATGTCATAGGAACGGCCTTGAAATTCTTTGGCCAGCCGGAGATAAGACTTGGTCATCTTGAAGAAGATTTCAATATCCCAACGTTTTCCGTAAATGCGGATGACCTCTTCATCAGGCAAATGGACATCCGTGGTCAGAAGGGCCAGCCAATTTCGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTTAGTGGGATATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 1057790-1058014 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082237.1 Caldalkalibacillus thermarum TA2.A1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================== ================== 1057790 24 100.0 42 ........................ TGCAAGGCGCAAACGTGCTCATATGGTCAATGGAGATGTTTT 1057856 24 100.0 46 ........................ CCGCAACTTGACCCTGGCAGGCAACATCACGGCGCAAAACGGTTTT 1057926 24 100.0 40 ........................ GTGCGCTTGGATTGCACGGTATGAACCGATATGGGGTTTT 1057990 24 83.3 0 .................GC...TT | G [1058003] ========== ====== ====== ====== ======================== ============================================== ================== 4 24 95.8 43 ATCTGAACTTAGTGGGATATAAAG # Left flank : CATCCACAATCAGTACCTTTACCCGATCTTTACCGGTTAACGGCCCAGTTTGTTCCGATCAGCCCGCTGCTCAAAAGCAGCAAAAACTTGCGCCAGTTATAGCGGCTGGAATTCAGAAAACGATAGACCGCATCTTTTCCGGGAAGATCCAGTGCGTCTTTCTTTTGAAGAGCTTGATACAGATTTTTCTTGCTAAACACCAGGAGAAAAAGGAATTTGAAAAGCGCCAGGCAAGTCCATCCGCAATCTTTCACAAAATTGGACTTTTTGAGTAGAGAGCCAATCCGCTGTTCTTTGAAAAAACGATCCACTCTTGAAAGAAGTTGCTGGTCAGAAGCCGAGGAATTTGGTACGATAGACATGAAAAACATCCTTTCCTTGGTAAGTGTTAGTGATAGCAACTTCATTTTACCAAAGGATTGGGTGTTTTTCGCGTTTTTTGGCCAAATTCCCCAGTTAAATCAAGGGATTCTCTTGTTTTTCAAGGTGCGAAAGTTGAG # Right flank : TGCGATGTTCGGGAAACCAGACGGGACAAGGGATGAGAGACACAGGAAAATAAATTTTACCCCACACCATTCTTAAAAATCAGGACTTTAACAGATGAAATCTTGTACGCCAGAAAAAATTGACCCCACCAAATTAAGCACAAAAAAGAAAACAGGTAAATCCTCCTATGGTAAAATAGGGTTGACCAAAAAAACTCATAAAACCAAAGGAGGTTTACCTGTATGGCCATTATACCACAACTCAGCCTGTTTGGGTGGGAAGAAATCGAAGAATTGGGGGATTTGGAACGTTTGCGCCTGGTCATGGAAGCCATGCCCGATGAGGAATTGATGCAGACCCTCGAAACCGAACGTGGTCGGGGACGAAACGACTATCCCATCCGGGCCATGTGGAATTCGATATTAGCCGGGATTGTCTTTCAGCACGAAAGCATTGAAAAACTGCGCAGAGAACTGGCCCGCAATGGGCAGCTGAGGCACCTGTGCGGCTTTCAGGGGCA # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGAACTTAGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 1069824-1072003 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082237.1 Caldalkalibacillus thermarum TA2.A1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1069824 30 100.0 38 .............................. AATTGAATATCAACCTCTAATCCAAAACGCTCTCGAAA 1069892 30 100.0 36 .............................. CCACCAACCTTGTACTTGGGGAACCTCGGGTCGTAG 1069958 30 100.0 37 .............................. GCCTGGGGCCGATGTCCGTCAAACGGGCAATCACGGA 1070025 30 100.0 38 .............................. TACAGCTGTTCGTTCCGGCTTTGGCAAAGCTCCGTTTG 1070093 30 100.0 38 .............................. TATCTACGTGACCGAGCATTTGCGGTTCGACGACCCTC 1070161 30 100.0 37 .............................. ACGGTATAATTAAATTCTTCTGTAATGTCAGATTTAA 1070228 30 100.0 37 .............................. TGATGATACATTTTTAAACGCTTACCATAAGAAGGGA 1070295 30 100.0 38 .............................. CCAGGTTGGGTGCCGACATTTGCTCAGTGGACAAGGTG 1070363 30 100.0 37 .............................. GAACAAGAAAATAAAGGGAATGAATCGGAATATGAAA 1070430 30 100.0 38 .............................. TTACATTTCAGACTGGACAACCTTTTTTAAACGGGCTA 1070498 30 100.0 35 .............................. ACAGAAAGTATATGATGATAGCCACAACGGAAATG 1070563 30 100.0 37 .............................. CGGCATCCTGTCCGTCAATTTCAAACGTTATCTCAAA 1070630 30 100.0 37 .............................. TCGTGTTCCATTCGTCGTTTCCTCCTTCCGTTCCCAC 1070697 30 100.0 37 .............................. TCACAACCCGCGATATATTCGAGAAAATGTTGGCGGC 1070764 30 100.0 37 .............................. TCACAACCCGCGATATATTCGAGAAAATGTTGGCGGC 1070831 30 100.0 35 .............................. GTGCGTGTCTGGCATCGCTTGATACGCAATCCAGA 1070896 30 100.0 38 .............................. GTTGGTCGATGGTTTGGCCCATCACCTCGCCTCCTTTC 1070964 30 100.0 38 .............................. CCGCGAAAGGCAAGCGGAAACCGTTCACCAAGGCGGAG 1071032 30 100.0 36 .............................. TATCGAAGCCTTGCCGAAGCAGGTCAAATCAGATGG 1071098 30 100.0 39 .............................. TATCCCGGTGGCCCACGATGAAGGCGAGCAACTAGACCG 1071167 30 100.0 38 .............................. TCGCCAGAAATTCATTGCTACTGCCGTAGGTGAAACAG 1071235 30 100.0 37 .............................. CCTCAAACGTGCTATCTGGCTTTGCCATGGAAGCTGA 1071302 30 96.7 36 .............................A CGAGACAATAGCCAAAATGGGGAGCATGAGCCGCAG 1071368 30 100.0 36 .............................. GACGTCATATCATACCAGGCATCATGCCAATCAAAA 1071434 30 100.0 36 .............................. AAGGGGGTGATACATTGGGTTTTTGGAGCAGATTTT 1071500 30 100.0 38 .............................. TGATTCTGGCATCGTCGTCCACCTGGACAGGATATACC 1071568 30 100.0 38 .............................. TGAAGCTTTTGAGTTTGTCATTTGGGTATGCTGGGCGA 1071636 30 100.0 38 .............................. GCGAAGTTTGTGTAAGGTTTATCCTGTTCAATCTGCTT 1071704 30 100.0 37 .............................. GTGGCATTTGGAACATAAATATCTATTCTATTGCCTT 1071771 30 100.0 37 .............................. AAGTCTGACACTGCCATACCATGATCCCCATCATATT 1071838 30 96.7 36 G............................. CCTTCTACAGGGAGACGGATGTACGTGTGATTGAAA 1071904 30 96.7 38 G............................. ACGAGTCCTACGCTGAAACTTGCCGCTTCGCGGATGCA 1071972 30 73.3 0 G...A............CCC.....T..GT | AA [1071993] ========== ====== ====== ====== ============================== ======================================= ================== 33 30 98.9 37 ATTTGGATCTTACCTATGAGGAATTGAAAC # Left flank : CAGGGATGGTGTTCAGCAGTGTTTGTCATTGTTGTGTATGACTTCAATGAGAAGAGAGTAGCCAAGGCACTGAAGATCTGCCGCAAATATTTGCACTGGGTTCAAAATTCGGTGTTTGAAGGTGAGATTTCGCAAGCTAATTATGTTAAATTGAAAGCCGAATTAAGCCGTTTGATTGATCCTGAGGAGGACTCGGTCGTCTTTTATATTTTTAGAACCAAGCGTTATTCTAAAAGAGAAGAAATGGGATTAAAAAAGGGTGGAGATGAGAATATTTTGTAGATATCTTGGTGATGTATTCGGTAGGCCTCTATACAGTATTTGTGTCGTCGATCCCAAGTAGTGCAAAAAACCTCGGGGATCGACGACACAGAAAATTCCGAAAAATTACCCCTAAAGCCAGATAGATAGAGGATTGATGTAAAAAGTTTAAATGCTTTATTATTGAAGCAGGATTTTTAAAGTTAAAGATCGAATACTGTATTATCAGCATTTTTTGG # Right flank : TCCATGAAAAAAGCACAAAAAATCCAGGGGGTGTTAACACCAGCAGATTGGTATTTGCTGGAATAAGTCATGTTTATGCACCTGATGGTTACTGTTTCGGTTAACTACGCTGTTTGATTTGACGGCTCTACCATGACCTTAAACCCTAGTGTTTCCAACTTCCGAATCGCTTGTCTGGCGACTTGATGGCGCTTGCGTTCTTCGTAGTAATGTGGACCAAGTTCGATGTAAGTCTGCTTCTTTTTGAGGAGATGGTAGACAATAGTCAGGATGCTATGAGCGACCGCAACCGCTGCACGATTGGCCCCCCGGCGTGCAGCAATACGGTGGTACTGGCTGGATAGATAGGTGTGTTTGGACCTAGCAGCGGCACGGGCGGCTTCCACCAGGGTGCTACGAAGCTTCTGGTTTCCCTTGCGGGTTTTCCCTGACTTTCGTTTTCCGGCACTTTCGTTATTCCCTGGGGCGACTCCTGCCCATGAACACAAGTGAGCTGCCGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTGGATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 4 1088727-1090177 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082237.1 Caldalkalibacillus thermarum TA2.A1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1088727 30 100.0 39 .............................. TGGGTTGCGGTGTACAAAATTGATCAAAACGGGCTTGAG 1088796 30 100.0 39 .............................. TCTGAGTTGTCGTTCTCCCGTCCTTCTATCGCTTTCAAA 1088865 30 100.0 36 .............................. TTTGTATAAAAATTTATTTTGCACGATTTTTGCACG 1088931 30 100.0 39 .............................. AGTTTTCCGTTTACCATTGCTGCAAAGAAACCTGTTACA 1089000 30 100.0 38 .............................. TGTGACCTTCCGCCAGGGCCTCTTTGATACACATCCGG 1089068 30 100.0 37 .............................. TAAACCAAGGGACTGAACCCACTGACGGCATTATTAC 1089135 30 100.0 38 .............................. CCCCTACAAGAAAATCCTCATCCCCTCACCGGATGATA 1089203 30 100.0 37 .............................. AACTCATCGACAATCTTATTAATTTAGGTCCTGACTA 1089270 30 100.0 39 .............................. TTCCTCTACTGGTTCATACGTTTGTTGGAAAATATGATC 1089339 30 100.0 35 .............................. CATACGCAAAACCTCTAAAGCGGTTTTTGGGAGTC 1089404 30 100.0 36 .............................. CCACATGCAGGAGGTGATATTGTAGCTGATACAGCC 1089470 30 100.0 37 .............................. GAGCTCTCCGAGTTGTTGGAGTAGCTCTTCTATTTTT 1089537 30 100.0 39 .............................. GAAGCACGAGTTATCAAGATAGAGCGTAGGCGCAAGAAC 1089606 30 100.0 38 .............................. AGCAACCTTCTCCAGACGGCCAGCCATATCTGAAGTTG 1089674 30 100.0 39 .............................. TGATAAGCGCCAAGATCGGCACGCCAGACACGCTCACCA 1089743 30 100.0 37 .............................. TTATCCTCCTTGTTAGAATGTAATTAAAAGTCTGTGT 1089810 30 100.0 37 .............................. ATCCGATGGTACGGGGAAGGTAAGGGCCTTTTAGTAG 1089877 30 100.0 38 .............................. AACCAGGGGTCATAATAAATATCCTCATACCAATCATC 1089945 30 100.0 39 .............................. TCGTTCACAACTGGGGTCCGTCACGAGGCGGTAAGACGG 1090014 30 100.0 36 .............................. ACAGAGGGAAAAAACATGGTTAACTGCGCCAGATGC 1090080 30 100.0 38 .............................. TATCCCACTCTATCCCACTAAAAAATAAAAATTCTATA 1090148 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 22 30 100.0 38 GTTTGGATCTTACCTATGAGGAATTGAAAC # Left flank : GCAGGGATGGTGTTCAGCAGTGTTTGTCATTGTTGTGTATGATTTCAATGAAAAGAGGGTAGCCAAGGCACTGAAGATCTGCCGCAAATATTTGCACTGGGTTCAAAATTCAGTGTTTGAAGGTGAGATTTCACAAGCTAATTATGTTAAATTGAAAGCCGAATTAAGCCGTTTGATTGATCCTGAGGAGGACTCGGTCGTCTTTTATATTTTTAGAACCAAGCGTTATTCTAAACGAGAAGAAATGGGATTAAAAAAGGGTGGAGATGAGAATATTTTGTAGATATCTTGGTGATGTATTCGGTAGGCCTCTATACAGTATTTGTGTCGTCGATCCCAAGTAGTGCAAAAAACCTCGGGGATCGACGACACAGAAAATTCCGAAAAATTACCCTTAAAGCCAGATAGATAGAGGATTGATGTAAAAAGTTTAAAAGCGTTAAATTGAAGCAGGATTTTTAAAGTTAAAGATCGAATACCATGTTATCAGCACTTTTTGG # Right flank : CGCCCAATACGATTGCCTATAAGCCCCCTAATGAATTTGGACAACTAAGGTGTGATCTATTAAACTATTAACTATAAAATTAGGGGGCTGATGAATATGAAACGCCAAAGACATTCTGTTGAATTTAAAATACAAGTTGTCAAGGAGGCCTTAGAGGCCGGAAATAAGGCTGCTGTGGCCCGTCGGTATGATATCCATCCTAATCTGGTGCATCGTTGGACAAAAGAATATCAAGACGGTAAATTTGGCGATGTAGATATTACGGCAATCCCAACACTCGATGCAAAAGCATTGTCACAGGAGAATGAGCAACTGAAGAAACTATTAGGTGAAAAAGACCTGGAGATTGCAATTCTCCGTGATCTATTAAAAAAGAAAAACCCTCACTTGCTGAAAAAATTGAAGTAGCTGACAAATGGATTCGTAAAGGATACCCCATCAGAACGGTGCTGAAAATCATAGGCATCGCCCGTTCGACTTATTACTACCGCAAATATTAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGGATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 5 1091730-1092914 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082237.1 Caldalkalibacillus thermarum TA2.A1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 1091730 30 100.0 37 .............................. TACGCCGTGGCTGACGGCCAAAAGCGATAGGGAGGCG 1091797 30 100.0 38 .............................. TTTTACTGACGATTGATTCTCCCATCTCTTCTGTGATA 1091865 30 100.0 37 .............................. TTCCGTGGAGCAAGAAGTGTATTTCGAGGCGGACGAA 1091932 30 100.0 39 .............................. TTACGTGACTCTCTTCAATCTGACGCAAGCGTTCTTCAG 1092001 30 100.0 38 .............................. TGGTGCGCATATTGAAAAACAGTAAAAATCATAGGCTA 1092069 30 100.0 37 .............................. TCGCAAATTTCCATAAAGGTTTCTTCGTCTATAATGA 1092136 30 100.0 37 .............................. TCCGGTGTTTGTTCCATGAGGTTAATAATGCGAGGAT 1092203 30 100.0 40 .............................. AACTGCTGATCTCACTGTGGATGGTGGGACAACAAATGTT 1092273 30 100.0 36 .............................. CCAAGCTAGCCGATCCATCCACTTTGCCCACTAGCA 1092339 30 100.0 38 .............................. CGTTCATCCAGCTTACGAAGGTGAACACATCGGGAATC 1092407 30 100.0 37 .............................. TGTGTGAGACGGTGCATGTTGCTGATCTGCTCAAGCG 1092474 30 100.0 37 .............................. CAACTCTCATGGACAAACAGCCGATTCATACCAAGCA 1092541 30 100.0 39 .............................. AATGCAACAAGTGCTACACATGGGGCGAGGTTCCTCAGT 1092610 30 100.0 41 .............................. GGGACATTGAGGCGCACAAAGCAGAGTACAAACGAAGAACA 1092681 30 100.0 38 .............................. AACGAGGGAATTTATGCCAGTGAACTGATAGCAACAGA 1092749 30 100.0 38 .............................. CAAGACGATGATCCGAGTTCGGTCAAAGGTCTGCTTGA 1092817 30 100.0 36 .............................. TATTGCTGAAGTTGAGGAAGACCAGAAGGCTAGACA 1092883 30 76.7 0 ....A............CCC.....T..GT | AA [1092904] ========== ====== ====== ====== ============================== ========================================= ================== 18 30 98.7 38 GTTTGGATCTTACCTATGAGGAATTGAAAC # Left flank : GCTGTGCAACTTTGAAGGTAGAGCATGAGCGTATACCTCCAAAAATGCCAAATATGAACGCTCACATCGAAGCGTTTCATCGCATTTTACAGGATGAGTGTCTAGACCGTATGGTCTTTGATACATACCAAGAGGCATATAAGGCAGTGACAGAATTTATCCGGTTTTACAACAAGCAGCGTATTCACTCGAGCATCCACTATCTGGCACCAGAGACATTTTATGAACAGAACAGGCGGGGGTTGATTCCCATTCAGGAAGTACGCGTTTAAAGCGAGACTCATGCCTTGTTTCGTCTTAATTACCCAGTAGCCTGGACGGGAATGAAATCAAGGGCGTGGATACACGGGCGTAAGCCTTTACCCTTGATGAAATGGACGGACAGGCTATACTACAAAAAGACGAAACAAAGAGCATTTTTGAGAAATAACTTAAAAAGTTGTGATTATGTCCAAATTTAGGGGGTTAATCCGATTGGACCAACGCGAGGTGGACCGATA # Right flank : TCCATGAAAAAAGCACAAAAAAGCCAGGGGGTGTTAACACCAGCAGATTGGTATTTGCTGGAATAAGTCATGTTTATGCACCTGATGGTTACTGTTTCGGTTAACTACGCTGTTTGATTTGACGGTTCTACCATGACCTTAAACCCTAGTGTTTCCAACTTCCGAATCGCTTGTCTGGCGACTTGATGGCGCTTGCGTTCTTCGTAGTAATGTGGACCAAGTTCGATGTAAGTCTGCTTCTTTTTGAGGAGATGGTAGACAATAGTCAGGATGCTATGAGCGACCGCAACCGCTGCACGATTGGCCCCCCGGCGTGCAGCAATACGGTGGTACTGGCTGGATAGATAGGTGTGTTTAGACCTGGTAGCGGCACGGGCGGCTTCCACCAGGGTGCTGCGAAGCTTCTGGTTTCCCTTGCGGGTTTTCCCTGACTTTCGTTTTCCGGCACTTTCGTTATTCCCTGGGGCGACTCCTGCCCATGAACACAAGTGAGCTGCCGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGGATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 6 1628215-1630809 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082237.1 Caldalkalibacillus thermarum TA2.A1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1628215 30 100.0 38 .............................. GAGATAGCCGTCCAGGGTAGCTTAAAATTATTTCCTTC 1628283 30 100.0 38 .............................. TGCCGATAGCGAAAGCCTTTTTCTGATGATCGAAAGGC 1628351 30 100.0 36 .............................. AAGGTGAGTCTTCGCTTGCTAAATTATCGGGGCAAG 1628417 30 100.0 37 .............................. TGCGAAAGTCGTCGACCCCCTGGAGATAGATGACCTG 1628484 30 100.0 37 .............................. TAGTTAACGACGTAGAATGGTTTGGGGCAACGGAAGC 1628551 30 100.0 39 .............................. CAGCAGATGGAGAAACCGGCCGTGTGCAAGTTGAAGCAA 1628620 30 100.0 38 .............................. CATCTGATTTGTCATATCAGCGCGCCGCTGAGATGGTG 1628688 30 100.0 39 .............................. CAGTAGCCGTTGGTTCACCCTTCCGGTTGGGGAATCCCA 1628757 30 100.0 36 .............................. AAGGAGGGACAAGCTATGGCCAGTATTCAAAAGGTA 1628823 30 100.0 38 .............................. TCAAAAGAAACGGCCGCCCTTTTGGCGGAGGGCGACCG 1628891 30 100.0 38 .............................. AAGTAAGGGGTGTAAAGTAATGAGATTAATTGAAATCA 1628959 30 100.0 36 .............................. CTAGACATAGTGTCTTTGTACTTCGATGAAAGGGTG 1629025 30 100.0 39 .............................. TTGTCTATGCATGGTCGGGTTCTCCACCCTCAACCTAAA 1629094 30 100.0 40 .............................. TGGCTAAAGCACGGTTTCCTTTGCACTCTTTTCGTGCAAA 1629164 30 100.0 38 .............................. ACCTCCTTGGCTGGTTGATAGTGTTTGCACTCTCTCAC 1629232 30 100.0 36 .............................. CCAACTGACTTTTCTTCAGGCAAATGTGATTGATCT 1629298 30 100.0 38 .............................. AGTGCTGTCGGTAATATAACCAGCGGCATAATGGACCG 1629366 30 100.0 36 .............................. CTTCACCGCTAGTTCATAGTGATGTGTCCGGCCTGT 1629432 30 100.0 35 .............................. TTTCAAGAGGATATCTTCAACTTCTTCCAGTACGC 1629497 30 100.0 40 .............................. AACGGCGTGAATGGTACATTTACAGGTTCATTGGTAGGAG 1629567 30 100.0 36 .............................. TACTGAACCAATACAGAAAAGAGAAAATCAGGGGCC 1629633 30 100.0 38 .............................. CCTTCATAAGAGTATTCCATTTCTGGGTTTTCAAAAAA 1629701 30 100.0 36 .............................. CAGCTCAACAACAACAGCGATATATTGAGCGGAAAA 1629767 30 100.0 36 .............................. GTGAGTGGAGTTGGGACAGCAAAGAGAAAGGCCGAC 1629833 30 100.0 39 .............................. ATGTTGCCTCTGCGCTTGTGACACGGTTGTTCAGTTCGT 1629902 30 100.0 37 .............................. ACTGCATACCATGGCATAGCAGGCAGATATGGCATGA 1629969 30 100.0 40 .............................. TTTTCGCCAGTCACCGCGAAAGTGCCGTTTGTTTTTTCGT 1630039 30 100.0 38 .............................. CTCTGTATACACTTGGTATAAGAGCGATAAACTCACTG 1630107 30 100.0 38 .............................. CGCGGAAACTTTAGTGATCTAAAGCATATCGAACTTTT 1630175 30 100.0 36 .............................. TTTGCCAAGTAACAGATTAACCATTTTTGGGAACAA 1630241 30 100.0 40 .............................. TCGGTGAAGCGTTGCTGGAAGGGCTATTTGAAGACGGCAA 1630311 30 100.0 36 .............................. TTATGTTTGATAAAAGCCGGAATATCCACATTTTCC 1630377 30 100.0 36 .............................. AGGATTTCATTTAGAGGCATGCAGTCTTCGCAGTAA 1630443 30 100.0 37 .............................. ACGTTGCCTCGGCACTTGTTACGCGGTTGTTTAGTGC 1630510 30 100.0 37 .............................. ACACGCAAGGTACTGGGTTTAATCTCGTTGCGGATGA 1630577 30 100.0 37 .............................. ATTCTTCCAGATTCATTTTCGCATCAACTCCTCTCTC 1630644 30 100.0 39 .............................. GCGTTGATGATGTCAGCGTCACGAACAGTTAAATTTAAC 1630713 30 100.0 37 .............................. CGGATGTCGTCCCAGACTTCCTTTGCCGCGTGTTCTG 1630780 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 39 30 100.0 38 GTTTGGATCTTAACTATGAGGGATTGAAAC # Left flank : ACTATTTTCATCCTGATAACCGTATGTTTGCCCAGCAGGTGGAAGATAATCTGTTAAGGAAGTATGAGGCTTTCTACGGTCAACCAGCAAGCGAACGCTTTTTGATCCGTCCTGTCCGCATCCGTCCCATAGACAAGGTGGTGACCCGGTTTAAAGGTACGATTATCAATGCTTGGTCTGGCATCTACGAAGTACAATCCTCCCCTGAATTGATCAGTTTTGCCTATAAAGCAGGATTAGGAGCGAAAACATCACAAGGTTTCGGTATGTTTGAATTCATCTGAATTCAGAACATGAGAAAACATGATTTTCATCAGTCCGTCTTGTCGTCGATCCTTAATAGCGCAAAATTCCCGGGGGATCGACGACACAGAATATTCTGATAAATAAACTCCAAACCATTGCAGGTCAAAGAATGTATATGTTTTTACAAATATTTTGAGTCCATACAGGAATTTTAGAGTAAAATGTCGTATATTTATATATCAGCATTTTTTGGG # Right flank : CTACACCCTCAACTCACTGATTGACTGGTGCTAGTATAGTTTCATGGACACATTTTAGTTAAGTCCCTTACAATAAAAATTGGGAGAGGATGTGTCCAATATGAACCGAAAGAAATTCAATGACGACTTTAAAAAATGATTGTGGATCTCTACCATTCAGGAACTTCTGTTAAAGATCTGTCCGGCGAATATGGCGTATCTGAAGTGACGGTTTACAGATGGATTAAGCAGTTTGCTCCAGTGGGCTCTGCAGATGAGTCCATCACCCAGAAAGAGATGGTTGAGATGAAGAAGGAGATGCTCCGTCTCCAACAAGAGAATGAGATCTTAAAAAAGGCTATGGCCATATTCGTCAAAAAGTAAAGGATACTGAGTTAGCAGAATTCATTGACAATCATAAAGCAGATTCTCCCGTTCATACCCTGTGTAAAGTGCTGGGGATTCCCCGAAGCACGTACTATCAAAGACTGAATCATAAAGAGTCAAACCGCGAACGTGAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGGATCTTAACTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA //