Array 1 223271-217320 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADZHL010000035.1 Shewanella algae strain CCUG-72638 72638_35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 223270 29 100.0 32 ............................. CCTTAAGCGCCCAGCGCCGGGAGTGCTGACCC 223209 29 100.0 32 ............................. GAAAACGAACATTTCAGCGCCAGCAACATCGG 223148 29 100.0 32 ............................. TAGCCTTGTCAAGGAGTGCAAAAGTCCGACAC 223087 29 100.0 32 ............................. TAAACAACCTTGCCAGACTGAAAACCCTCAAA 223026 29 100.0 33 ............................. CGAACCAAGCCAACGCGGCGGCAATAAAGAACC 222964 29 100.0 32 ............................. CTCCCTACAGATAGAGTTAAAAACAGAGATAC 222903 29 100.0 32 ............................. GATTGCCAGACATACGAAGAGATGAACCACGA 222842 29 96.6 32 ............................A TTGGTTATCACCAATCGCCCTGCCCTTAGCGC 222781 29 100.0 32 ............................. GAAATGATGATGAAATATCTCGCTCAAGTTAA 222720 29 100.0 32 ............................. TCGTTTGAGTGCTTCCGGTGAAGTGCGTACAG 222659 29 100.0 32 ............................. TTTTAACTTAATAGAATCGCGTAACTTCTCAT 222598 29 100.0 32 ............................. CAATTATGAGCGGTGATAATTGCTGTGCTTGA 222537 29 100.0 32 ............................. TGACCACAGACATAAATCGCCATGTGACGAAC 222476 29 100.0 32 ............................. CTACTGGACTGCTTGAGTGGTATGGATGAGGA 222415 29 100.0 32 ............................. GTACCGCACTGCGTGATCGCCACAGTGTTGCC 222354 29 100.0 32 ............................. TCAGGGGTTCTTCGCCCTGTCTCGTAGTGATA 222293 29 100.0 32 ............................. GGAGTGGTCGATTATGAGCAGGTGCGGGAGTT 222232 29 100.0 32 ............................. GCCAGCCGGAACTGGCACACTTTGTTTGTCCA 222171 29 100.0 32 ............................. GATGATTCTGCAGGCGCTGCGAGGCATGTGGA 222110 29 100.0 32 ............................. GCGTATTGCTTTTATCGTAACCACCCGGCTGA 222049 29 100.0 32 ............................. ATAGCGCTATCTGTTCTCCATACTGGGCTTGG 221988 29 100.0 32 ............................. CCTGGGTCTACGCTGGGGTTGGCATCGCGCTG 221927 29 100.0 32 ............................. GTCACGACATAGAAACCGTGCTTGAGACAGTG 221866 29 100.0 32 ............................. TAGTTCCTCTTAACCTGATTGGTAATGATGAT 221805 29 100.0 32 ............................. GCAGTTGGGCATACTCATTTACCAGCTTACTC 221744 29 100.0 32 ............................. CAGTCCATTCGTTGTGACGGCACCAATAGTGA 221683 29 100.0 32 ............................. TGCCCACTTTGAGCGGTTAGAAGCCCTCATGT 221622 29 100.0 32 ............................. TCCTTTGTCGTGGCGATGCAAACGAACGCGGA 221561 29 100.0 32 ............................. AACTGGCCCGCCGCCGCGAAATGTATCCGGAT 221500 29 100.0 32 ............................. CAGCTATCAGGCGGCTTTGACTCAATCCTTGA 221439 29 100.0 32 ............................. AGTGCAGCAGATTATCGCGGATTCTGATAGGC 221378 29 100.0 32 ............................. GAATTAGCTCTATGTCAGTTGCTGGCTTTAAT 221317 29 100.0 32 ............................. ATTTTCAAGAGGCCGGTCAACAGGCGAAGGAC 221256 29 100.0 32 ............................. CTGACCGCCACAACGACAGAGCTCCTCATCGT 221195 29 96.6 32 ........T.................... GTTTGAATCCTATGCAGTATATAAGCGCTATA 221134 29 100.0 33 ............................. CGCTATACCTCCGGAGACTCAGTATTTTCTGGC 221072 29 100.0 32 ............................. GCGTCCCCGCCTGCGTTGATCACGGCGATAGT 221011 29 100.0 32 ............................. CCCAGCAACAGCAGAACCAGCGCGACACCCAA 220950 29 100.0 32 ............................. CTCACACCACAACAGCGCGCCATTGTGCTTTA 220889 29 100.0 32 ............................. ATGCTTGGTCAAGTGGCCGCAGGTTCGCAGTG 220828 29 96.6 32 ............................A GTGGCACGACGTTGGTAACGTCTGGGGTATCA 220767 29 100.0 32 ............................. CCCTTGCAGGGTTTTGAGTTGCCGCTCCAGCT 220706 29 100.0 32 ............................. TCACCGCCTTCTGCATCCAGGGTGCGGCCATC 220645 29 100.0 32 ............................. CCACGCCTCACCCGCCGGTTTAGGCAAGGTAA 220584 29 100.0 32 ............................. CCTTTTTGAAAAGTGTGTTAGCGGCTGTGGTG 220523 29 100.0 33 ............................. ATGGCTGAAAAAGGGTACAGGGAAGAAGGTGGG 220461 29 100.0 32 ............................. TAATGCGCCTCAGCTTTCAGCTTGTTGGTTCT 220400 29 100.0 32 ............................. CGTGCCAATCAATCGGCGTTTGACCGCCTCCA 220339 29 100.0 32 ............................. TCAGTAAACCGTGCATCGCCATTGCTGCAAAG 220278 29 100.0 33 ............................. CCAAAGAAAGAAAAACGACATGGGTTACTTGTC 220216 29 100.0 32 ............................. CTCACTGTTTTGAGGCTGGCGCCACTTGGGCA 220155 29 100.0 32 ............................. TTGATCCGTTAAAGCTGCCGCGCGAGCTGGAT 220094 29 100.0 32 ............................. CACCCATTATATCGTAACCAAAGTGCTCCCCG 220033 29 100.0 32 ............................. CTGCACCGTGTTCTTGCCGGTGACTTTCTCCA 219972 29 100.0 32 ............................. CGGCCTGTCATTTGAAGTGTCAATGTACGCTC 219911 29 100.0 32 ............................. GCTTACGAGGACGGCGTAGGAATTTGGACTAT 219850 29 100.0 32 ............................. GTTGCACAATTTCTCCAATCCTAAATGAAGGT 219789 29 100.0 32 ............................. ATCGGCTTGCCGTTCACCTCGACACGGATGTT 219728 29 100.0 32 ............................. CCCATCCGGCACCCCGAGAAGCCAACACCAGG 219667 29 100.0 32 ............................. ACAATGACGAGCCGTTTGGCATTCTTGATAGA 219606 29 96.6 32 ............................A ACAAGAGTAAAACCAGGTGACAAGCTGGATCT 219545 29 100.0 32 ............................. GTGTAGCCATCGAAACGCTAATCGAAAAAGTA 219484 29 100.0 32 ............................. GCTGAGCATACCTCTATACTTCTTGGTTAAAA 219423 29 100.0 32 ............................. GTTGTCGGGCAATACTTCGCCGCCGCGCCGAC 219362 29 100.0 32 ............................. ATGAGCTGGCGGCATCAACTGATTTGGTTGTA 219301 29 100.0 32 ............................. CAGGGTTAACCACTCTAATCAACGGCAACCTA 219240 29 100.0 32 ............................. AATACGAGGATGGTGCAGTATTCTACAACTTC 219179 29 100.0 32 ............................. CTCATCGACAGGATGCCGAGTTGAGCAGTGGC 219118 29 100.0 32 ............................. CAGGCGCTTATGTGGGCTGCTGAGATGGTTGG 219057 29 96.6 33 ............................A GATAATCCCGGAGGTTTCATGTTTTGCTGTTGA 218995 29 96.6 32 ............................T CTTTGCATATTGATTTGTTTTCCTCAATGATC 218934 29 100.0 32 ............................. CTAGAAGAACTGTACGTACAAAGCACGGCGGG 218873 29 100.0 32 ............................. TATCCCCCACTTAACCATGTTTTCAGATTTGT 218812 29 100.0 32 ............................. TCTCACGCACCCAAAGGTGTTCACCAACTGCG 218751 29 100.0 32 ............................. CGTGACAGTGTTCCCAGAATATACACCTGAAA 218690 29 100.0 32 ............................. CTATCATTTTATTAAGTTTTGATTGCTGAGCA 218629 29 100.0 32 ............................. CTACCGGGGACGCGAACACGACAGAGGCTTTC 218568 29 100.0 32 ............................. GGCAGGGCGGGGATTATTGAGTGGATTATTCA 218507 29 100.0 32 ............................. CCAATCACATGCTTGCGTTTGGGGTCGAAAAG 218446 29 100.0 32 ............................. TGGGCGGCCAGTTTTTATTTCGACCTTCTTCA 218385 29 100.0 32 ............................. TGAGGATCCATTCAGCCAGCGATTCATTGTGC 218324 29 100.0 32 ............................. ATTTATATCGGCGCAGTTGACCAAGATCCGCT 218263 29 100.0 32 ............................. TGCATAGCTCTCAGCTGAGCCAGTTGGCCGAA 218202 29 100.0 32 ............................. TCTGTTTCTGAAATCTGTTTAAATAGATCTTC 218141 29 100.0 31 ............................. TCCTTAAATACTTTTGAATTACCCGAATCCG 218081 29 100.0 33 ............................. TTATGAGGCAGTGATGTTTCATATCCTTCCGGC 218019 29 100.0 32 ............................. GAATGAACGGATTGCGCATTTGTCGCCATCAA 217958 29 96.6 32 .T........................... TAACAATCGTTTCATAGCTTGCCCCTTCTACA 217897 29 100.0 32 ............................. GGTTGGCCTGCAACTCAACCCCGTATCTAAAA 217836 29 100.0 32 ............................. CGGCAACAGTGGTCAGGTCTACAGCAGCGAAA 217775 29 100.0 32 ............................. CTGTGCCCACGCTGCAAAGAGTACTGGCCCCA 217714 29 96.6 32 .............T............... TTCCTCGAGATACTGCTCCCTCGCGCCGTCAC 217653 29 100.0 32 ............................. GCCCCAGTTACGCCAATAGCCATTACCTAGGC 217592 29 96.6 32 .T........................... GTGTGGCGCAGAACGTGGCTGCACTGACCCTC 217531 29 100.0 32 ............................. TATTACGGCCGTAACACTGCTGTAGGTGTGCT 217470 29 96.6 32 .T........................... TTACCGAAGAAGAGTTCAGAGCAGGGTTTTAT 217409 29 96.6 32 .........A................... ACTTTTAGGAAAGCCGAGGAATGTTGGTTCCT 217348 29 89.7 0 .T........................GT. | ========== ====== ====== ====== ============================= ================================= ================== 98 29 99.5 32 GAGTTCCCCGCACCCACGGGGATAAACCG # Left flank : GTACTGGCAGCCGGTGAAATTGAGCCGCCTCCAACTCCAAAGGATGCCCAGCCCATTGCTATACCAGAGCCGAAACCGTTGGGAGAACAAGGACACAGGAGCCAGTAACTATGAGTCTGTTGGTTGTGGTGACCGAAAATGTACCGCCTCGCCTACGTGGTCGTTTGGCCATCTGGTTACTGGAGGTGCGTGCCGGGGTTTATGTGGGTGACACCTCCCGCAAGGTGAGGGAAATGATTTGGTATCAAATCAGTGAATTGGCAGAGGAAGGCAATGTGGTGATGGCCTGGGCCACCAATACAGAGTCAGGATTTGAATTTCAAACCTTGGGTGAGAATCGTCGTATGCCGGTGGATTTGGATGGTCTGCGACTGGTCTCATTTTATCCAACTGAAAAATAACAAAATATTGCTCTTTAACAACTTGGAATAATAGCCTAAAAAGTTGGTGAATATTTTTAAGTGAAAAATTGCTTAAAAAAACAATAGTATTTGCCAAGA # Right flank : TATTTCTTTACTGTACAACCCCAGCAAAATCCGAACGTCCTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAGGAGATCTAAATAGCGGCCCGGCTCAAGGCAGCATATCTACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGATAACTGGAAGCGTCCGGCTCTGGGTGGGCGCCATTCCAGGGTTTGTCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCGATGTGTTCATTGGCCACGCTTTGGCGCAGGCTGTAGGTGACGCCTTTCAAGGGAGAGCGGATAAGCGGGGGCGAGTAGCTGACCGCGACTCTTTGGCTGCAGGCGGCCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAGTCTGACGGCCAGAAGGCAAACACCTCCTGGTGGTGAATTGCCGAGTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCACCCACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACCTACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.00,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //