Array 1 29007-31440 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXQK01000003.1 Riemerella anatipestifer strain RCAD0377 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 29007 47 100.0 30 ............................................... GAGGCGTACATCAATGTGGTAAAACACTTC 29084 47 100.0 30 ............................................... GTCCAGCAACGGCAGGATCACCTCACGCAG 29161 47 100.0 30 ............................................... CAGGCGCACGCGCTCGTATTCGGCAAAGTA 29238 47 100.0 30 ............................................... GCTCCAGATTTAGTTTTAGAAGGTCTCAAG 29315 47 100.0 30 ............................................... CGATGCGTCAGACATAGAAGCTCCACGCAT 29392 47 100.0 30 ............................................... ACAAAATACGAGTACATCAACGAAAAGGGC 29469 47 100.0 30 ............................................... ATTGTATATTTTTACTTTTTCATCAAAATC 29546 47 100.0 30 ............................................... TCTGACAATATTCAATTTAAACCAAGCATT 29623 47 100.0 30 ............................................... TATTATTTTGTACTTGCACCCTCTAATGTT 29700 47 100.0 30 ............................................... AATGGAAACAAACAAAGAAAACAACGATAA 29777 47 100.0 30 ............................................... TAGAAGTATGAATGAGGTAGTTTAGAAACT 29854 47 100.0 30 ............................................... TCATAGGAAACTCTAGTGTCATTGCTCTTA 29931 47 100.0 30 ............................................... TGCTATTTTGAAGTGTGTAAATTCGTCCCA 30008 47 100.0 30 ............................................... TGTTTGTTATTGTTTCAGTGCAAATTTAAA 30085 47 100.0 30 ............................................... ACCTTCTTGGTATAAACTAAAAGTTTCATT 30162 47 100.0 30 ............................................... AAGAGCTATCTGGAGATACTATAATAGATA 30239 47 100.0 30 ............................................... TTTGAAGCATAAGGGAGCAGACGATAAAAT 30316 47 100.0 30 ............................................... GGACGTATGGTACTTGGAAAGAGGGTACTT 30393 47 100.0 30 ............................................... CACCAACATGTCAGACGCACTCAAATATTT 30470 47 100.0 30 ............................................... TGTCTGGAGAAGAAGCATTGCTTTATGAAG 30547 47 100.0 30 ............................................... TTATTATCAAAAGTTATTTTAAAGCCAAAT 30624 47 100.0 30 ............................................... TAACATCAATAAGCTCTTCACCACGCCCAA 30701 47 100.0 30 ............................................... TGTCGTTCGGGTTTTACGACTAAGACTTTG 30778 47 100.0 30 ............................................... GTCCAGGCTATGGTTCTCCAGATAAAACAG 30855 47 100.0 30 ............................................... TGTTTTAAAAAGTCATTAAAAAAAAGGCTT 30932 47 100.0 30 ............................................... CTTTGGGTACGGTAAGTTCTATGCTTCAAA 31009 47 100.0 30 ............................................... AAGCAGATAACGGAAGATTTCAACGAGGGT 31086 47 100.0 30 ............................................... TAGAGCAGGTTTTCATTTGTATTACTATCT 31163 47 100.0 30 ............................................... TAACCCACTCCTCTTCGTATTCTTCATTCT 31240 47 100.0 30 ............................................... TATTTTGTTCTTGCACACATAAAATTTCTG 31317 47 100.0 30 ............................................... ACTACGGAGCTAACTAAATATAAACAGCTC 31394 47 91.5 0 .........T..............G..................T..T | ========== ====== ====== ====== =============================================== ============================== ================== 32 47 99.7 30 GTTGCGAACCATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Left flank : CTGTTTATAAATGTTATACTGGAGAAAAAAGACAAATATCTGTGCCTGAGTTTTATGAAGTTTAATCGTTTTAATGCTTATAGAGTTATGTGGGTTATGGTGTTATATGATTTACCAACAGAAACCAAAGCGATGAGAAAAGCAGCTCAACTTTTTAGAAAACGCTTGGAAGATGATGGGTTTAGTCTTTTCCAATTTTCCATTTATATACGGCATTGTCCTAGTCGAGAAAATGCGGAAGTACACATCAAAAGAGTAAAATCAATACTTCCCAAGCATGGCAAGGTAGCTATAATGAGCATTACAGATAAACAGTTTGGAGATATTGAAATTTTCTTTGCGAGAGCTAAAGAGGAACCAAAACCAACCTATCAGCAATTAGAACTTTTTTAGGAATAGAAAAAGACTTTACATCAAACAAAAATAGAGAAGAAATAGTAAAAAATCTAATCCTATAAAAACGCAAAACCCATTGAAAAACAATGGGTTTATTTTTTGAG # Right flank : TATTACTGTTTGTTATTGGTTTTATTTTTTAAGATATAAAACACGCTTCCAATTATGTAAACCGACACAATTAAATTAGATACTAAATTAAAAATCCCTATACTCCCAAAATCCATTACAATGTAGTAGGAATTATAAATGATATAAAAAATAGAAAATACAATAAGTATAAAATATAGTATAGAGTTTTTCATTTTTATAAATTGCAAGCTGTTACAAAGATAAAAAAAGAGCTACCTCCAAGAGGTAGCTCTACGTTTTTAAATTGAGATATTCAGTCTACTTTAAAGTAATATTGTCTATTTGTACAGTAGTAGTTACAGTAGTGTTACCTGCATATTCAAAAAAGATATAACCTTTTCCTGTAGCAGGAATTGCAAATTCGCCACTATCTACCCAATCGGCAGCATAGCCATTAGTATTTTCTTTTGAAAGAGTAAACTTAGAAGTAATATCTATTAGGTCGGTTTTATTTACAACTCCGCCAGGTGTATATTTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACCATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,4.87 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], //