Array 1 5673-55 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXR010000010.1 Erwinia amylovora strain 1602 Ea_1602_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 5672 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 5611 29 100.0 32 ............................. CCAGTTAGGATGTCTCTTTCATGATTTATATA 5550 29 100.0 32 ............................. CCCGAGCCCATGTGCTAGTGCCGGTAAGAAAA 5489 29 100.0 32 ............................. GCGTCCTGGCCATCGAGTGCGTATATCCATGT 5428 29 100.0 32 ............................. CAACCAGTTTCGTTAGTTGTTTCTGGGATTAA 5367 29 100.0 32 ............................. GTTGAAAATTGACCATTACAAGAAATTTAAAA 5306 29 96.6 32 ............................C TTTTACGAATATGTCTTGTATCCCGGCTCTGG 5245 29 100.0 32 ............................. GGAAAAATTATCGAGCTGGCAAATAATAAAGG 5184 29 100.0 32 ............................. GATAATGCGGAGTTTTCGGGCACGCTAGAGGC 5123 29 100.0 32 ............................. GTGCAGAGATGCCGATATTGACAGATCCAATT 5062 29 100.0 32 ............................. CGCGATTGAAAGGGCTGTGGTTTATCGTGATG 5001 29 100.0 32 ............................. TTCCCATACCTTCACGGCCCGACACTTTGCGA 4940 29 100.0 32 ............................. CGCTTAATCAGCTCAACGCAGCGAAGGACGCT 4879 29 100.0 32 ............................. TCGCGGCAAAGCGCCTTTTGCCGCTGTATGGC 4818 29 100.0 32 ............................. GTGTTCTTCATCTGTATCCACTTCACCCACGC 4757 29 100.0 32 ............................. CAGGGTGTGTGGCTCACGCGCTTTCATCACGT 4696 29 100.0 32 ............................. CATAACGCTTCTTTTCTTTGGTTCTTCTGTCA 4635 29 100.0 32 ............................. TTCCCGCGTTTCGTGGGATACCCCTTTTATGC 4574 29 100.0 32 ............................. CGAACCTATGCGGCATTAGCGGATGCCGCCGG 4513 29 100.0 32 ............................. GTGTTCCGCCTGGCTGGGAGAATGTGGATGGC 4452 29 100.0 32 ............................. CTGAAAATGAGTGGTGGGCAGCCGGGAGTTAG 4391 29 100.0 32 ............................. AACTTACGGTGGCCTGGCTTGAACTTCCGGAC 4330 29 100.0 32 ............................. CCGGGCGAATGCGGGGATTGCAGGGGCAATGG 4269 29 100.0 32 ............................. GTATTTATAAACGATTCATTAATACGCTTATA 4208 29 100.0 32 ............................. CAGCAACCGGTGGTATTTTTCCGGGTCGGTTA 4147 29 96.6 32 ............................C ATTACTGGTAGTAACTCAGCAGTATTCGGTAC 4086 29 100.0 32 ............................. TTCCCGCGTTTCGTGGGATACCCCTTTTATGC 4025 29 100.0 32 ............................. GGCACCGCCAATCTTCTGGCCCCAGTGATTAT 3964 29 100.0 32 ............................. GAGATAGCTAACATACTTAACTTATCGCCTAA 3903 29 100.0 32 ............................. GTGATAAGCGTACCCTGCAGACGGCAAATAAC 3842 29 100.0 32 ............................. CCAGCTCCAGTGCTACCGCAACGCCAGATTCA 3781 29 100.0 32 ............................. AGTAATTAATGATTCTGAAATCTCTCTTAATA 3720 29 93.1 32 ..........NN................. AACGTAATCAGTGGGCTGATATGCACGGTCTG CGAGTGC [3704] 3652 29 100.0 32 ............................. CCGCAGTGGTGTTGTGGTTCTTAGCAGGCCGA 3591 29 100.0 32 ............................. GGTGAGTGTTTAATACTTCCCCTTTGGAGGCA 3530 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 3469 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 3408 29 100.0 32 ............................. TGAACGAGCGCGAGGCACCTGACGGTGCAGAC 3347 29 100.0 32 ............................. GTGGTGACCTCTTTGTGGGCGGCGTTTCTGGG 3286 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 3225 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 3164 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 3103 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 3042 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 2981 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 2920 29 96.6 32 ...........A................. CGCAATTTTTAGACAATGCAGAATTTTATTTT 2859 29 100.0 32 ............................. GATAGGAGCAAGGCAACGCAAAATCCCGTGAA 2798 29 100.0 32 ............................. AATGTTTGTGTTAATTGGCTTTTCTGCCTCAA 2737 29 100.0 32 ............................. TTATAAAAGCGTTTATTTGTAATAATCGTAAT 2676 29 100.0 32 ............................. AGCCTGAATTGCCGGAGATATCTGATGTTGAC 2615 29 100.0 32 ............................. CGCTGAAATGTGAATCAGTGCGGTATTTAGCC 2554 29 100.0 32 ............................. CTCAATCAGGGGACTGATTCCGCGTTAATAAC 2493 29 100.0 32 ............................. ATAATAAAAAGGCCGCGCATAGCGACCTGTTG 2432 29 100.0 32 ............................. TCGGGTATAGTTCATCTCCCATTTTCCAACTA 2371 29 100.0 32 ............................. CTTCGAGATTAGAATATGACTCAGTACCACTA 2310 29 100.0 32 ............................. CTGTGTCAGGTTTCGCCACTTCTGACAGATTC 2249 29 100.0 32 ............................. GACTCTTAACTCATTCTGCCGCTTTCACGGTC 2188 29 100.0 32 ............................. AAAATGTTATAAGCCGTATTCCTTGCGGAACA 2127 29 100.0 32 ............................. GGTTGAATACCTTCAGGGATTTAGAGCTACCA 2066 29 100.0 32 ............................. ATAGTGCTCGACGTTAACGCGTGCGCCGTACA 2005 29 100.0 32 ............................. TACCAACTAGTACGGGTGATGCAGATCCGGTT 1944 29 100.0 32 ............................. TGTGTCCCTATGGGATGTGTTGCTTCAGATTC 1883 29 100.0 32 ............................. GCGGGTCATCTTCAGCTGATGACGCTGATACT 1822 29 100.0 32 ............................. TAGAGGTAGATGGAACATCTATTAAAATCTTC 1761 29 100.0 32 ............................. CGTATTGATCAGATACTTACACTTGGCCAGAT 1700 29 100.0 32 ............................. TCATCGCTGATACCTGTTCAGTAGTTAAAACA 1639 29 96.6 32 .......................G..... GCCAGTGCTATCAGCAGGAGATACGGAACCCC 1578 29 100.0 32 ............................. ATGCAACGTCAGCCCAGTCAAAAGAAATAGGA 1517 29 100.0 32 ............................. CCAATGACGCCGCAAAACTGCGCTCTATTTCA 1456 29 100.0 32 ............................. ATCTAGGTTTGCCGGTTTCAGGATCATCAGGA 1395 29 96.6 32 ............................A GTAGGGAAGAATAAAAATAGTTATGATGGAAA 1334 29 100.0 32 ............................. TTAATTTTATATTCATTTCTGCAGTCTCCAGC 1273 29 100.0 32 ............................. GCTCATCTGCGCACGATGAAAGTCAAAGGGTA 1212 29 100.0 32 ............................. GGGTTAAAAATGAACAAATCAACGCTTTTCAC 1151 29 100.0 32 ............................. CAAAATCGCCGCATAGCAAACCGCTCTTTAAA 1090 29 100.0 32 ............................. CAACAGTACGCGGGGTGCTGTTTATTCTGTCC 1029 29 100.0 32 ............................. CGATCAATGACTTTATGTTAGCCAGGGAAAAT 968 29 100.0 32 ............................. CCAACCAGCCGGCATTCAGTAGCCAGAATGCT 907 29 100.0 32 ............................. CGGCGGCTCACAGCCCCTACGGACGTCTGTTT 846 29 100.0 32 ............................. TTCACGCGCTCTTGTCTGCCACTCGTCAAGAC 785 29 100.0 32 ............................. CCATCGCAGATGTGGCAATCAACAACAGGCGA 724 29 100.0 32 ............................. GCAGAGCGAGGCGAGTCTGTTTACTTCACACA 663 29 100.0 32 ............................. GGGCATGCGCAGAGATTAAACGCTGGGTTTAT 602 29 100.0 32 ............................. GCCCGCAGGCAGGACGAGGAACGAACACGCAT 541 29 100.0 32 ............................. ATGTCGAACCTGTCGGCGTATCAACCGGGCTG 480 29 100.0 32 ............................. GTTGTCCTGTGGCTTGCTAAATTTGGATTCTC 419 29 100.0 32 ............................. ATATAAAATGAATGAATGGATCAGGGCCTATG 358 29 100.0 63 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGAGTGTTCCCGCTCTTTTGCGGCTTAGTGCGAA 266 29 100.0 32 ............................. GTCAATTATGGACGTACAGGTAGCAGCTACCC 205 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 144 29 100.0 32 ............................. CCCAAAGGAACAACGAGAGCTATCCAAACCAA 83 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =============================================================== ================== 92 29 99.7 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCGGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GACCAAAGGCGACCATCAGGTAGAACTGGCCTTGCGTTCCCCGCGTGAGCAGGGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9182-12141 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXR010000006.1 Erwinia amylovora strain 1602 Ea_1602_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9182 29 100.0 32 ............................. GCGGCGAAGAGACCGGAGCATGGGCTGTTGAA 9243 29 100.0 32 ............................. CCCATTTCCCTGATTTTCCTGGGATTATTTCT 9304 29 100.0 32 ............................. CGGGCATTAGCGGCTTTGAAACGAGAACTGGA 9365 29 100.0 32 ............................. CACGATCACACTGTCAGCTAGATTTTATGATG 9426 29 100.0 32 ............................. AATATCTAGTGTTTATGCGTGCCTTTTCTGGC 9487 29 100.0 32 ............................. CAACTGAGCAACTCCGCTTTGCCCCATACCAA 9548 29 100.0 32 ............................. CCATTCCCGAGCCATCGTCGCGACATCCAGGC 9609 29 100.0 32 ............................. AAAGAAACTACCCCCAACCCCCTAACGGGTGT 9670 29 100.0 32 ............................. CGACTATTCGGCGAACTGAAAGAGCCAACCGT 9731 29 100.0 32 ............................. ACGCCGCCATTCGGATCCGGGGAGGATTCGGA 9792 29 100.0 32 ............................. AATGCCTCATACCTGGCGGCCAGCCTTCAGCG 9853 29 100.0 32 ............................. TACCGCCAGTGGGCCATTGCATCCGGCATGGC 9914 29 100.0 32 ............................. TAACTACGTCAGCGGTGTCCAGCATGACGGAA 9975 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 10036 29 100.0 32 ............................. GAGAGCAACAACAAACTCCGACCGGAGAAACC 10097 29 100.0 32 ............................. TACACTGCAGGCAGTACGGGAATGGTTAACCC 10158 29 100.0 32 ............................. GTTTCGGCGAGCGCGTATATGGTCACGTTCAC 10219 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 10280 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 10342 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 10403 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 10464 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 10525 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 10586 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 10647 29 100.0 32 ............................. ATGGCCCGCTAAATGTTGACATGTCTGGTCGG 10708 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 10769 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 10830 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 10891 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 10952 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 11013 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 11075 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 11136 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 11197 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 11258 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 11319 29 100.0 32 ............................. CGCGAGTACCCATCCATCCCCGCAGAGGCATT 11380 29 100.0 32 ............................. GCAGGGCCGGTTTACGTTGCGCAATCGGAGAT 11441 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 11502 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 11564 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 11625 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 11686 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 11747 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 11808 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 11869 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 11930 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 11991 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 12052 29 96.6 32 .........A................... ATGATGGAGCTGATAGTTTTATTAGATGTCGA 12113 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.5 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 21605-21933 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXR010000006.1 Erwinia amylovora strain 1602 Ea_1602_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 21605 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 21665 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 21725 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 21785 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 21845 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 21906 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //