Array 1 293067-292259 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB849543.1 Acinetobacter gerneri DSM 14967 = CIP 107464 = MTCC 9824 strain CIP 107464 acLZs-supercont1.36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 293066 28 96.4 32 ....C....................... GGTGTACTTAATCACTGTGGATGCAAGCTTCT 293006 28 96.4 32 ...........A................ AAATCGACACCAGTTTTTGTATTGGTTTTTGA 292946 28 96.4 32 ...........A................ ATCTGATAACTTTTTAACTTTATCAGGGGCTT 292886 28 96.4 32 ...........A................ CATCTGCTGCTCAATTCTCTCGATCGGAAACT 292826 28 96.4 32 ...........A................ AATACACGGCAATCTGTGAGCCTGTTTTTTGC 292766 28 100.0 32 ............................ GCTTTGTGTTGATCACCAGAAGCGTGGATACA 292706 28 100.0 32 ............................ ACGATCCGAATGTCGAATCGTGGTATCACGTA 292646 28 100.0 32 ............................ TTTAAAAGGTTTAAACTTGCCACTTAACCGAC 292586 28 100.0 32 ............................ TTTGCAAAAAGTTACTGAAATTGAAGATAGAT 292526 28 100.0 32 ............................ ATTACGACATAATCATAAACGCCGTCAGCTTT 292466 28 100.0 32 ............................ TCGAGCCAATCCAGTCCAGTGATCGTATCTGT 292406 28 100.0 32 ............................ ATAAGCAACCTGTAGGCGGTGTCTACCGCCAC 292346 28 100.0 32 ............................ TCCATTTTCACAAAAACACCTGCAGCAGTACC 292286 28 89.3 0 ............C...........T..A | ========== ====== ====== ====== ============================ ================================ ================== 14 28 98.0 32 GTTCACCATCGCTTAGATGGTTTAGAAG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGGACAATTATGGCAAAT # Right flank : AACATAAAGCATATATCCGATCACTAAATGCATTTCGGATATACGCTTTATTTTTAGACTAAATATTGACTTTTGATCTTGGGATTTTATTCATCATTTAAAGAACATTCAAAATTACTCGGATTTTGAGAGCAACGAACTTTCTTTAAAATACGCATCATTTCAGGATTGTAATACCCCTCTTTGGTCATTTGAATACGAGCTTCTCGCATGATTTTGATATATCCCGGCTTATCCGCTTCACGAATATCCATCCAATATTTGGCAGGTATATCACGCTCAAGTTTATCTACAAATTGAAATGCAGGTGTCAATTGTTTTGAAATAATCTCTCTGGCAATCGAGCCCATTCCTGCAGGGAATTTGCCACGATGCATGATCAAAACACCTGTCAATTGCACGATTGGAAATTTGATAATCCCACCAACCACTTTTTTATTTTTATCTTCCATTCCCTTATGTAGTTCTAAAGGATCAAAAAGCAAGGCAGGTCCTGCCAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGCTTAGATGGTTTAGAAG # Alternate repeat : GTTCACCATCGATTAGATGGTTTAGAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCGCCATCGCATAGATGGTTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 293968-293760 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB849543.1 Acinetobacter gerneri DSM 14967 = CIP 107464 = MTCC 9824 strain CIP 107464 acLZs-supercont1.36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 293967 28 100.0 32 ............................ ATGTTCGGCATGGAATCATAAAGGCAATGTTT 293907 28 100.0 32 ............................ TATGACCGCACTATTGCATTATCTGCTGAAAA 293847 28 100.0 32 ............................ TCTTTGGTCTGTTTAACCATTGGATCAGCAAG 293787 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCCCCATCGCTTAGATGGTTTAGAAG # Left flank : GGTCGTTGGGCAAAATCTTTATATCGGCAACTTGCCCAAGGCTTTGGTTTTGAGTTTAATCGTGAAGAAGGTAAATCTTCACATGATTCGATGGCTGATACTGCCAATAATTATCTCGATCATGGCAATTATATTGCTTATGGTTATGCGGCTGTGACATTGAATGGCATGGGAATCAGTTTTGCCTTACCCATTTTGCATGGTAAAACCAGACGTGGTGGTTTGGTATTTGATATTGCAGATTTAGTCAAAGATGCTTTTGTGATGCCTCAAGCATTTGCATCAGCAAAGTTCGCTCATAACCAAAAAGAGTTTAGGATGCAGCTTATTGAAACGTGTCAAGATCAGGATGTTTTAGATTATATGTTTGGCTTCATTTCTGAGCTTTGTAATAAAATTAAATAATTCAATGTATTACAAACAGCATCTTTTTTGATGTATTTTTATTCTTTAATAGCTTATCTATTTATTATCTAGGGTATTTTTATTAAAATACTCTA # Right flank : GATCCCTTCAGATGCTCCTAGTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCCATCGCTTAGATGGTTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCGCCATCGCATAGATGGTTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 566168-565780 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB849544.1 Acinetobacter gerneri DSM 14967 = CIP 107464 = MTCC 9824 strain CIP 107464 acLZs-supercont1.37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 566167 28 100.0 32 ............................ ACAAACATTGATTGCTGGCAACACGCTTGCTT 566107 28 100.0 32 ............................ CATTATCATAGGTGGTCTAGTACATGCCTTAA 566047 28 100.0 32 ............................ TTTTGATCAAATGCTTAATTTCATCAAGCCTT 565987 28 96.4 32 ..................A......... GTGTAGTGTTGTTCCTAAATTTACTGAAACAT 565927 28 100.0 32 ............................ ACATGTTTCCCTCAGAGGTTCATGTGGTTTTT 565867 28 100.0 32 ............................ TCCTAAACGCAGGCATGCTCCTTGCCCTGCAT 565807 28 96.4 0 ...........................A | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.0 32 GTTTGACATCGTGTAGATGGTTTAGAAG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTTATAGTCATCATGTTCGTGATAATATTGTTG # Right flank : AGCAGATGAAAAAATTCATCAACATATAGCCAACTCATCAAATCCAGATAAATGAACTAAATAATTCTATATAGTGGGTGTGGGCACTTTAAAATCGAGCTATTGATACACCTAGAACTTTATATTGACCAAACCAAAGCATTCGACAGCCTTGTTTTATACCTAAGTTTTCTAATTTTTTAGTGTATTTGATTGTTTTTAAAACGCTTGTTATGTTTTTTTCTTTTTTGGCTTAAAATCTAAACAAATGCAATCGAAGGGGGATTGCATAAGATATGGTTTGCGACTAGAATTCCTCTCGTACCATTGATAGAGAATATTTAAATAGGTTAAAGCCTTAAATACTCTGCCAAAAATATAAAATATCACGAAAGTGGTTTTTTATCGGGGGCGTGGCGAAATTGGTAGACGCACTGGATTTAGGTTCCAGCGCCGCAAGGTGTAAGAGTTCGAGTCTCTTCGCCCCCACCATATTTTAAAAGCAAGGTTTGAAGCCTTGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGACATCGTGTAGATGGTTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: R [matched GTTTGTCATCGTGTAGATGATTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 567061-566793 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB849544.1 Acinetobacter gerneri DSM 14967 = CIP 107464 = MTCC 9824 strain CIP 107464 acLZs-supercont1.37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 567060 28 100.0 32 ............................ ATGTTCGGCATGGAATCATAAAGGCAATGTTT 567000 28 100.0 32 ............................ TATAGTTGAAACAGCTCAATCATACAAAGATA 566940 28 100.0 32 ............................ TTGAGTTGTTTCCAAAATACAGGAAGCCACTC 566880 28 100.0 32 ............................ TTACAACCAACTAGGTGAAACTGGCTCAATCA 566820 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTTGACATCGTGTAGATGGTTTAGAAG # Left flank : GCTTTAGATGCAGGTTGTATCGATGCTGCTTTAAAGCTATGTAAAGGTGTTTTTTTGGCAAAAACGGAAAGTCCTTTTTTATGCGCTTGGCGTGATTTTATTGAATCTCGTTTGAGTGAGGCGATTTTTAAATCCAATGAAACAGATATTTTATTTAAACATTTGGCACGTTTCCCTGATGCGATTGACGCAGTGGAGCGTTTGATTGAATTGACACCTTTGCACCATCCTGCACATCAGATGTTGATTAAGTATAAAGATGAGCATTGAGATTTAAATATGAATGTAGTTAAAAATCTGTAGAAAAATAATTATTTAGATTTTTATTCAACATTATCGTTAATGGGATCATTTTGATTGGTCTTTGTTATTCTTCGATTTTTATTTATATAAAATATTAATTTAATTCAATGGTTTATATTTCTGTCTAAGAATGAAGTTTTTCAATGTATTTTGTGCTATCTTTTTGATATTGGAACATTTGTATAACGTATGTTCTA # Right flank : AACCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGACATCGTGTAGATGGTTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTTGTCATCGTGTAGATGATTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 577771-577563 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB849544.1 Acinetobacter gerneri DSM 14967 = CIP 107464 = MTCC 9824 strain CIP 107464 acLZs-supercont1.37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 577770 28 100.0 32 ............................ TGAATATAATTTAACTCTTAGCTTACCTTTTT 577710 28 100.0 32 ............................ CATTTTATCACAATGATTAATAAAACATAAGA 577650 28 100.0 32 ............................ GTTGGTGCTCAAATCATAGGTGATGCGGAAAG 577590 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTATCCATCGTGTAGATGGTTTAGAAG # Left flank : AGTACTAAAGTAGAAACTAAAGATAAAAAGCATTTCAAAATTTCTGGTAATTTGACTGTGAAAGGTGTAACAAAACCAGTGGTATTGGATGCGACATTGAATAAACAAGGTGCGCACCCAATGACTAAAGCACAGTCAATTGGTTTTAATGCTACAACTTCATTTAGTCGTTCAGCATTTGGTATCGCAAACTATGTTCCGAATGTAGGTGATAAAATCACTGTAAATATCACAACTGAAGCTTCTGTTAAGCAATAAGTTTTTATAAATCATAGCCTGCATCAAGTTTAATAGCTTGATCGCAGGCTTTTTTATTTTTATCTCCATACAAAATATTGATTGCATATGGATGTGAAATCTTCATGTGAAGCTTTAAAAATGATTATTTAAATTTATTCTAATAAAATCAGTTAACTGTAGAATGTGATAAAAATGAAAGTAATCTGATTAAAGTTGTGTTATCTTGATGATATTAGTCACATTATTGTACGGTTTATCGA # Right flank : AGTCCAAGCGATGCTAATCAAAAGAAATATCTGCGAGAACGTAAAAAGTGAATAGTACGATAGTTTTTATAAGATTTTCCCCTAAATTTGCCAGTAAAGAATAAACTTAGATATAATGGAATAATAATGTGAATAATGAAATAAATCAGCTCATTTATAACAATTGATCATTAAGCTAATCAAATAGGACATAAAATGAAATTTTTTAAAAGTATTGCTATGGTTTCTATCTTAGTGCTTCCTCTATTAAATGCTTGTACATATTTAAAACCTAATAATGTAGTGGAAGTTCCCAATTTGACGCCTAAAGTCTTATTAGCAGCAACCCCGTGGTTAACGACAGAGGCAAAAGACCAAAATGCTCAAGCTGTTGCACTGGATGATGCACGTGCTAAAAACTATGTAGGTTATGCTTATTTTAAAAAAGACGGTTCATTTAAAATCGCAGATTCAAATCCCAAGTGCAACACACTTGTAGTTAGTTGAAAAAGTTAGGTGTA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCCATCGTGTAGATGGTTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTGATCCACCGTGTAGGTGGTTTAGAAG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 88872-89260 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB849549.1 Acinetobacter gerneri DSM 14967 = CIP 107464 = MTCC 9824 strain CIP 107464 acLZs-supercont1.41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 88872 28 100.0 32 ............................ ATTGGGGTGAGAATGTTATTCAGCTTAAAACG 88932 28 100.0 32 ............................ TGCACAGATTTTAAATAGTTTACGGTTATCAA 88992 28 100.0 32 ............................ AGTACCACCCGAACTCTGATAGCAATTGGATA 89052 28 100.0 32 ............................ ACTACCTGCTGAATAGTGATACATAGTGTTTT 89112 28 100.0 32 ............................ CGAAAAAGGCATATCAATCCACATCGATCCAC 89172 28 100.0 32 ............................ TTAAAGGATGTTATCTAATTGGCTTAAATAGG 89232 28 96.4 0 ...........................A | A [89255] ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.5 32 GTTCACCATCGTATAGATGGTTTAGAAG # Left flank : TGCGCTAGGCAGTCATATTTTTGATGCGGATATTCGAGAGCTTAGTGAAGATGTTCGCTCACTGGTCGAACATGATGCCTTCCTGTTCCAAAAAGTACGATTCTTACTTGATACAACATCTGGGTTCATTAACACTGAACAGAACGATACGATTCGTCGATTCTCGATTTTACCAAGTATGCTTGCACCTCCAATGCTGATCGCCAGTATTTACGGGATGAACACTGAAATCCTGCCTTTTGCACATGGGCATTGGAGCTTTTATGTGGTTATTTCAATTTTAATCGCGACCTTTTTTGGACCACTCATATACTTCCGTTGGAAAAAATGGATTTAATTTCCACCCTATTTTCACAAAGCCAAGCGATCTCGCTTGGTTTTTTGTTTTTATAAAATAGAATGTAAAATCAAATACTTATAAGACACTTAAAATATGATCTTTTTCTCTTTTTAACACACTATCTTATTGATAATAGACGTGTTAATTTGTAATAGTTCTC # Right flank : ATTAATCAGGACAATAAAATGGAAATACACAAAATCATTGATAATATTCGTCTTGATCTCAACCAGCTTGGCGATGAAACAGTACGTCAATCTTCTCAACGTTTTTTTAAATCTGATCAAATGACCTATTTCTACGGCGTAAAAAGTCCAGATGTTAAAACCCTCATTAAAAAATATAAAAAACAGGTTTTAGCTTTATCTAAAAAAGAAATCTTTGAGTTATGTGAAGAACTGCTAAAAACAAATTATCTAGAAGAAGCGAGTATCGCCTGTGCTTTTACAGCATCCATTAGCAAACAATTTATACCGACTGATTTTAAAATTTTAGAAAAATGGATCAATCTATATATTACAAATTGGGCGGCTTGTGACACGCTTTGTAATCACACCGTTGGTGATTTCATCATGATGTACCCTGAATTTATCCCTGAACTGAAAAAGTGGACAAACTCCCCAAATCGTTGGATGAAACGTGCAGCTGCGGTCACTCTGATCATTCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTATAGATGGTTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCGCCATCGCATAGATGGTTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //