Array 1 24463-23042 **** Predicted by CRISPRDetect 2.4 *** >NZ_APSZ01000102.1 Neisseria meningitidis 2003022 gnm2003022.contig.101_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 24462 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 24396 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 24330 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 24264 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 24198 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 24132 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 24066 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 24000 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 23934 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 23868 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 23802 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 23736 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 23670 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 23604 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 23538 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 23472 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 23407 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 23341 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 23275 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 23209 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 23143 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 23077 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //