Array 1 23355-25045 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPAK01000040.1 Campylobacter concisus strain AAUH-12CDdes2 1100479, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 23355 37 97.3 35 .....................C............... AAAACAATTTTGAATTTTTGCATATTTTGCTCCTT 23427 37 97.3 36 .....................C............... ACTTTATGAATATTGTCTAGTATCCCAGTATTTATA 23500 37 97.3 38 .....................C............... GCTACCGAAATATTCGGTAGTACCAAATTTAGCCTTGG 23575 37 94.6 37 ......................TT............. AAGCTATTTGAATAGCTTCCATTTGACTTTGATTAAT 23649 37 100.0 37 ..................................... TAGCTCACTTGATTGAGCACTTAGCTTTTTAATTTGA 23723 37 100.0 40 ..................................... GAAGTCAAGAAATTTTTTATTGCTTCTTTACCTTCAGCCA 23800 37 97.3 41 .......................T............. TCGTGAACAATTACTGCAGATAAGTATTCAGGTTTATTAGG 23878 37 100.0 41 ..................................... ACTTAAGTAATAAGAAGCGCTTGACCACGAGCGGCTTTGAT 23956 37 97.3 37 ......................A.............. ACTAGTTCAGTTTTGTTCATAATGTATCCTTTTGGAT 24030 37 97.3 38 ......................A.............. TCATCAGTTTCTCCATCAGTCTCTGAGTACTGAATAGG 24105 37 94.6 34 ......................TT............. CCATCACAGCGTAAAAAGCCGTTTGGGATATTTG 24176 37 100.0 39 ..................................... AGTATTATTAAACTAGTTATTATTGTCGCATGTCCTATG 24252 37 100.0 38 ..................................... AGTTTTTCTTTTGTTTGTGAATTAAATTTTGGATTTGG 24327 37 97.3 35 .......................T............. TAAAGTAGGTCACACGCTAGTTGTGGGGCGGTCGT 24399 37 97.3 36 ...................A................. ATCAGCTTCCAGCCTAGATATATGCGGCAGTAAAAG 24472 37 100.0 39 ..................................... TCATCATACTGCATCTCTTGAGGCGCATATTGCGCTTGT 24548 37 94.6 35 ......................TT............. TAAGAGTAGGCTTTTAAATTTATGATAGCAGTCGC 24620 37 100.0 36 ..................................... AAGACATCTCCTGCTTTAATTTGAAGCATAGGTAGT 24693 36 91.9 42 ..................T...-T............. TTTTTCTCCTCAAACATAACACGCTCCTTGTGCTCGCCCGTT 24771 36 91.9 39 ......................TT........-.... TTTATGTAGTGCGTTTTCGGGGCTGTTAAACTCTAGGCT 24846 37 94.6 39 ...................AT................ TTATGAGTCTCATCCATGAGAAATACGTCAAAAAATATA 24922 37 97.3 39 .............................G....... CCATTAGCTCATCATAATCATAAAACTCTGGACTATTTA AAAAAAAGGGG [24947] 25009 37 91.9 0 ......................TT............T | ========== ====== ====== ====== ===================================== ========================================== ================== 23 37 96.9 38 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : GCTTTGAGCTATGCGATAAAAAAGGTATCTTTGAGGCGCAAGAGCTCTTTGTCTAACTTATGTAGTTCTTAATTTTCTTTTGGATTTTTGATTTGCGAACTTTTTTAGCTGAAATTTGACCCTTTTTGGCTAAAATCTCGCGAAATAGGTTCGCAAATCTAGTTTTTTCAAAATATCTCTCATACATTTGCGAACTTTTAGTTATACCTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAACCTATAAAATTTGAAATTTTTAAAAGAGATTTGCGAACTTTTTTAAGATGACAAATGCCTAAATTTATGGGTTCTTTCACTTATCATTGTTAATTTTATGGAGTTAGTATTTTTAAATACCTATACATTTGCGAACTTTTTTGAGCTTTTCACGAATTTTAGGTATCTTTAAAGCCAGTTTCTTAAATAATTTTGCTAATTTTTCCTTTGCAAAAATAGTCTTTTAGGCT # Right flank : TTTACATTTATATGTAAAATTAAACTACTTTATCTACAAACACTACCATCAACTTTTTCATACTTTTATTTTTTTTGGAAACGCTTTGTCCATATCTATTTTTATAATTGCTGCATATTTACAAAAAAGAGAAACTAATAAAATATAAGAAGAGGAGATATTAATGAAATATAAAGTTGAAAGATACAAACTCATCTGCAAAAACTGCGGAGAGATATACTACTTTGACTACGAAGGATCAGATGTGTTAGGTAGGGACTACTTCGACCAAATAGTAACAGAGTGCTCTAAATGTGGCTCAAGAGTTTTAGAGAAGCGTGATTTAAATTTCATTGACACAGCGAAGATGAAATTTAAAAAGATGTTAAAACCAAAAAACAGCTACTTTACAAGGTGATAAGATGTTACCACTAATAGCAATTTTTACAAGTAGAGCGATAGTAGATATCCTACAAATAGGCGTAATAACTTTTTCAATCACTGTTTCAGCAGCCAAGACC # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-24] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 31743-32086 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPAK01000040.1 Campylobacter concisus strain AAUH-12CDdes2 1100479, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 31743 37 100.0 40 ..................................... ACAGCAAATAATGTTTGCTCAAATTGTGTAAATCTGTCGT 31820 37 97.3 40 ....................C................ AATTTTTCACTTTGAGTTCTATGTTTCCATGTAAACTCAC 31897 37 97.3 38 .......................T............. ATTAGCACGACTACCGCCATATTGTATGGTCTTGTTTC 31972 37 100.0 42 ..................................... ATGTTTGTCATATTTGGGTTATCCCACTGGTCGCACTTACGT 32051 36 89.2 0 .............................GC.-...T | ========== ====== ====== ====== ===================================== ========================================== ================== 5 37 96.8 40 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : TTTATAGACTATGTCGTAAACCAGCCATCTTTGAGAAGCAAGAGCTCTTTGTCTAGCTTATGTCGTTCTTAAATTTCTTTTGGATTTTTGATTTGCGAACTTTTTTAGCTGAAATTTGACCCTTTTTAGCTAAAATCTCGCGAAATAGGTTCGCAAATCTAGTTTTTTCAAAATATCTCTCATACATTTGCGAACTTTTAGTTATGGCTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAATCTATAAAATTTGAAATTTTTAAAAGAGATTTGCGAACTTTTTTAAGATGACAAATGCCTAAATTTATGGGTTCTTTCACTTATCATTGTTAATTTTATGGAGTTAGTATTTTTAAATACCTATACATTTGCGAACTTTTTTGAGCTTTTCACGAATTTTAGGTATCTTTAAAGCCAGTTTCTTAAATAATTTTGCTAATTTTTCCTTTGCAAAAATAGTCTTTTAGGCT # Right flank : TTCCATAATCCATATATAAATTTAGGCCATTTCACATACATAAAAAGTTGTATTTTATTTTTGAGACGTATTATGATAATAGTGCCATCTATCAAAAGAAACACCAATCTACAAGCAAGAATTGTAAAGTCAAAAAAGATCTATATAAGAAAGCAAAAGCATTCAAATTGTCCTAAGCTCAAATAGTCTATTACCAAGAAACACTATGATGCCTACTCAAATGTGGTCCAGTATCTCTATCCGTTTCAAGTGTTTTAAGTGGATTAGCCAAAATAGTATCTAGCAAAGATAGAGTCTAGTCGTCAGCACTTTTTATCGTAAAAAGTATTTTTCGCAATTATTTTTTACACCAGTGATATTATCATTTATAATAACTTTTGAGCAGAAATATTTTAATGTGAGCTTGGCATTTTTAAAAAGGTAGTTTTTATCTTAATATTTAACGTCTAAAAATAGGTGCCATATTGGGTGCCATCTACTTAAGCATTATTAGCAATTTT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //