Array 1 46626-44954 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIVX01000012.1 Streptomyces sp. CB02261 scaffold12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 46625 29 100.0 32 ............................. TTTCTTGGCACCTCCATGATGCACGGCGCGAG 46564 29 100.0 32 ............................. ACCTGCATGGCCTGCACGTGGCGGTCGCATCC 46503 29 100.0 32 ............................. TCTTCGGTGAGGCCTTCGCCGACTGAGGCGCC 46442 29 100.0 32 ............................. TTCACCGGGCTCTACGACGGGACCAACCCCGT 46381 29 100.0 32 ............................. TCCGTCGCCTCCACCGTTCGGGATGCTCTCGA 46320 29 100.0 32 ............................. GGTCAGCTGCTCTTCCGGGCCGACGGGTCGGT 46259 29 100.0 32 ............................. GATCGCCGAGATCATGTCCGAACTCTCCACGA 46198 29 93.1 31 .........................C..G TCCTCTTTCGCTGGTCGTACCGGGCGAGGTA 46138 29 100.0 32 ............................. GCGGAGAACCGGGCGAAGATCGCGCGGGCCTA 46077 29 100.0 32 ............................. GAGCGCATCGGCAACAACGCCCGCGGCTCCGA 46016 29 100.0 32 ............................. CCGGACCGCACGTCGGTCCTCATCCGTATGAG 45955 29 100.0 32 ............................. GACTCCGTACGCATGGCGATCCACGACGCACA 45894 29 100.0 32 ............................. GGTGACGAGGACAAGGCGTCGGAGATCATCGC 45833 29 100.0 32 ............................. GCCCCAGGCCCCCGCGCGAGTGGGGGCCTGGG 45772 29 100.0 33 ............................. CCCGTGCAACCCCCCGGAGGACCCGCGCAGCTA 45710 29 100.0 32 ............................. GCCCCAGGCCCCCGCGCGAGTGGGGGCCTGGG 45649 29 100.0 32 ............................. GCGCGTGCCCGCACCCGCAACGGGAGAACCAC 45588 29 100.0 32 ............................. CGCCTACGCAGCCGCAGCCGTCAGCGGCACCT 45527 29 96.6 32 ..C.......................... TCGAACGACGCAGTCAGCATGCCGCCGACCTC 45466 29 100.0 32 ............................. TCGAACGACGCGGTCAGCATGCCGCCGACCTC 45405 29 96.6 32 .............C............... ACTGTGCTGGGGTGGACGTAGGCAGCGGGCAG 45344 29 93.1 32 .............CT.............. ACCATGTTCTTCACCGGCTGGCCGGTGATGGT 45283 29 96.6 32 .............C............... GCGTCCGGCATCAGGAACGCGACGCCGTCCTT 45222 29 93.1 32 .............C...A........... GGGCATCCCGGCCCCGAAGCTCATCCCGCCCC 45161 29 93.1 32 .G...........C............... ACGGACAGTGCCGCCGCGGTCCGCCGGGTCTC 45100 29 79.3 29 .............C.C.......CCCG.. GCCGCAGGCAAAAAGCCGGTCGTCCAGGA 45042 29 93.1 31 .............CT.............. ACCACCCCGCGCTGCCGGGCGGCCGCAGTTA 44982 29 89.7 0 ...........C.C..T............ | ========== ====== ====== ====== ============================= ================================= ================== 28 29 97.3 32 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : AGGTCGATGTGGAGGGACATGCTCACGCGGCGGCGCCGCGGTCCTGCTGGGTGGCGGGGGGCTTTGAGTCGAGGTGGGCTTCGAGATTGTCGAGGTAGTCGCCGTGGGTGTCGATCAGGGCTTGGGCGGCGGTCATGCCGGCGGCTCGGGCGCCGGTGGTGTCCTCGGCGATGAGGCGCTCGATGTACCGGTTGAAGTCCAGTCCGCGGGCTGCTGCGGCGTCCTTGCCGGCGGCGAGTGTGTCGGGTGTCAGGCGGAGCTGGGTCTGCTTCCTGTTCGTGCTCATACAGAGTAAGGTAGCAGGGTGGTAGCAGGTACACGAGAAGGCAACGGCCTACAACTGCACCCACCTCCGCACCGACGGGGATGATGCCGTAGCGACGTGGTGGCCGCGCGATCGTCACCATCCATGCAGGGGCGAGAAATTGCGCGGTTTGCCGGAATATTCGAAAGTGGCGAGAAACGGGTTAGGTCCGGAGGAAAACTGCTGGTCATGGAGT # Right flank : GGCAGGATGCCCGCCCGGTGCAACGTGCGACGGCTTCCCAGGCGGGCTCTACTCCCATCGTCCGCCTCAGCACCATCGGGCGCGCGCCGGACGACCTCTCGGGGTGCGAGGCCGCTTAGTACCAGAGGGTCAGAATGTCGGCCTCGCCTACTTGCGAGGAGCCGTCGGGACCGTACAGGACTCTCCAGGGCTTGTCGTCGGAGCGCGTTGGGCTGCCAATGCCATTGCCGACGAACTGGCCATCCTTGTCCGTGCATCGCCAGTTGATTCGCTGGCCTGCCACGGTGAACTGCGCGCCAGGCAAGCCGGCGCACCGCAGCGTTGATCCGTCGCCAGGGTCGCGAATCTCCAGCGCCCACGGCACATCTCGAGCGTTCTGGGGGCTTGGAGGTCCTGTCGTGATGTTGACGCGTGTCTAGGACGGCCTCTTTTGGCCCCGGGGGAACGGCTTCGTGTGGCCCCACCGCGGAACGGTTTGAAGTGGCCCCACCTGGCAGTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 49325-47529 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIVX01000012.1 Streptomyces sp. CB02261 scaffold12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49324 29 100.0 32 ............................. TCGTCGTACGGGAAGACGGCCCAGTCGGTGGG 49263 29 100.0 32 ............................. AAGTTCGTCACCCGGCGGCCGCTCCAGCTCTC 49202 29 100.0 32 ............................. AGGTAGGCACGCAGGCCGCGCACGTCTCCGTT 49141 29 100.0 32 ............................. AACGCCGCCGCTGCGAAGATCATCCTCAAACA 49080 29 100.0 32 ............................. GCGCCGGCCGAGAGCTGGATCGTCTCGATGTC 49019 29 100.0 32 ............................. TGTCCCGAAGCCTCCGGGCCGCCGGCGGCCCT 48958 29 100.0 32 ............................. GGGAGACGGCCGCAACTGGCGTACCGGCACAG 48897 29 100.0 32 ............................. TGACGAGGAGAGGCGGGATGCAACGTGCGAGC 48836 29 100.0 32 ............................. CCCGAGCAGCTCGCCGCCCACCGCGCCAAGAT 48775 29 100.0 32 ............................. TCGGGAAGGCCGAGCTGGCGGATGACAAGCGA 48714 29 100.0 32 ............................. CCGCTCGCTTGCTGCGTGTTCCGACGCAAGAC 48653 29 100.0 32 ............................. CACGCCGGCAGCGGCGACCGGGACGTCTTCAA 48592 29 100.0 32 ............................. CACGGCGTCCCGATGACATCCACCGTGACGTG 48531 29 100.0 32 ............................. GGCGGGGCGTCCCTCTGCCTGCCAGCAACCCG 48470 29 100.0 32 ............................. TTCAACCGGGGTAACTCGGTTAAGTACATCTG 48409 29 100.0 32 ............................. GGCCCTGCCGAAGGCTGGTCCTGGTGGCAGTG 48348 29 100.0 32 ............................. TCGCCCGGCGTTCACAACCTGATCGCCCCGAA 48287 29 100.0 32 ............................. GCCTCCGCCCGCAGCCGCTGGGGCAACCCGTC 48226 29 100.0 32 ............................. TCCGCGAACACCACCTTGGCCGGCGGACGCGG 48165 29 100.0 32 ............................. CACGCGGGCATGTGGGCCGCCGGCCAGCCGAC 48104 29 100.0 32 ............................. GCCAACGCGGCCAGCACCTACAAGCTCCGCGT 48043 29 100.0 32 ............................. CGAGCGGAGCGAGGTTGGGTGTGGCCTCCGAC 47982 29 100.0 32 ............................. CGCATCGTCTGAGGTGAGGGCATGAACAAGAA 47921 29 100.0 32 ............................. CAGGCCGCCTACGAGGAGAGCAAGAAGCTCGG 47860 29 100.0 32 ............................. AGGTCCGGGAGGGGGCCGGTGAACGGTCCGGC 47799 29 96.6 32 ...................C......... CACCGCAAACGGTGCGGGGCAGTCCCGGCCCG 47738 29 100.0 32 ............................. GGCGCGGGCCGACCTGAAAACGGCGCGGAAGA 47677 29 100.0 32 ............................. GGCTCGTACAGCCTCTTCCCGGTGGGCCTGGC 47616 27 89.7 32 .......--...T................ CTCCTCGCGCAGCTCGGTCCGCTCCTGCCGTT 47557 29 96.6 0 .............G............... | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.4 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GGCCGGACTCAACTACGGATCAGACGGTGGTGAGGACGGGGCGATGACCTGGTGACCGTGATCGTCCTGACCAACTGCCCACCCGGACTGAGAGGCTTCCTGACCCGCTGGCTTCTCGAAATCTCCGCAGGCGTCTTCATCGGAAATCCCTCCGCCCGAATCCGCGACATCCTCTGGCACGAAGTCCAGCAGTACGCCGACCAGGGCCGAGCCCTCCTCGCCCACACCACCAATAATGAGCAGGGCTTCGCCTTCCGTACCTTCGATCACGTCTGGCACCCCGTCGAACATGAGGGCCTCACGCTGATCCGCCGCCCGAAGGCAGGAAGCGCCGAGAGGACAAGCGACACGCCACCGAAACCAGGCTGGAGCAAGGCATCGAAACGGCGCCGTTTCGGAAGATCGTGAGCAAGGAAACGCACCTTTCGTTCGATATGTCGGATGCAGCGAAAGTGGCGCGGAAGAAGAGTGGACCGCTCTAAAAACGCAGGTCACGGAGT # Right flank : GCGAGGGTCAAGGCGAATGAACGTACAGCGCTGCTCCCGGCGTGGGAGTGGTTAGGGCTGCCAGGTGCGGAGGAGTTTTGCGATGCGGGCGGTGGTGGTGTGGGGGGTGTAGAGCTCGTGGGCGAGGGTGGTGAGTTGGTCGCGGGTGGGGTTTGCGGGGATGCCGCTGGCGTTGAGGTACATGACGGTGACGGCGCAGGCGACGGTGAGGTTGGAGCGTTCGAGCCAGCGGCAGCGTCCGAGGGTGTGGGCGAGGGCGGCGGCGCGGGTGTAGGGGCCGTCGTAGATGGGCTGGTTGAGGAGTTCGGCTTGGTGGCGGGCGACGGCGGCGAGGGGTACGCCGAGGTCGTCGGGGGCGGGGTCAGCGCGGCCGGCGCGTTCGGTGACTTCGAGGATCCAGGAGAGGTCGATGTGGAGGGACATGCTCACGCGGCGGCGCCGCGGTCCTGCTGGGTGGCGGGGGGCTTTGAGTCGAGGTGGGCTTCGAGATTGTCGAGGTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 58991-60571 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIVX01000012.1 Streptomyces sp. CB02261 scaffold12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 58991 29 100.0 32 ............................. TGGCTGATGGGGCCCATCCGGGACGCGATCGC 59052 29 100.0 32 ............................. GTCCCAGTGACCACCCCAACCCGCGATGGCGT 59113 29 100.0 32 ............................. GTGTTGTCCGCGGTCGTGGCCGACGCGGAGAA 59174 29 100.0 32 ............................. TCCATCGGCTGTGTCGGTCTCTGGCAGATCAA 59235 29 100.0 32 ............................. ACGCAGCCCAGCGCCAGGTTCCCGGTCAGCGG 59296 29 96.6 32 ............................T TCCATGTCGCTGTCGTCGTCGGGCTCGATGAC 59357 29 100.0 32 ............................. TGGATCCGGCGCATGGAACGCGCGTACGGGTA 59418 29 100.0 32 ............................. CACCTCCAGCAGGAACTGCTCCGCCACCCCGA 59479 29 100.0 32 ............................. GACGTGATCCGACACCTGATGGTCGTCGGCTC 59540 29 100.0 32 ............................. CGGGATGAGCGGACGATGTGCGTCGTCGAAAA 59601 29 100.0 32 ............................. TTGCGGCGCGGAGCCGTCCGGGCGCGCGGGTT 59662 29 96.6 32 .......................C..... AAGCCGATCAACACCGCAACGCAGGTGTGGGA 59723 29 100.0 33 ............................. TGGCTCCGCGTCACCTTCGCCCCCCTGGTGGTG 59785 29 100.0 32 ............................. TGTTCCGGACGCTGCCGCTGCGGATCTTCCGC 59846 29 100.0 32 ............................. TTCTCCCCCGGGCCGCGCTCGATCGGCCGGTG 59907 29 96.6 32 ...............C............. ACCTGGCGCAGCAGAGCGGAGTCGGTGATGGC 59968 29 100.0 32 ............................. ACCGAGGGCGACTTCGTGATCAGGGAGACCAT 60029 27 72.4 0 .................A..AGAA..T-- - Deletion [60054] 60056 29 100.0 32 ............................. ACGAGCGCGCCGCGCTTCGGTCTCACGGCCGG 60117 29 100.0 32 ............................. TACCTGACCTTGTCCAGCAACGGCGTGCCCGT 60178 28 96.6 32 ...........-................. TGGATGTCGGCGAGGAACGTGGTGCTCGCGTC C [60183] 60239 29 89.7 32 .............T.....A..G...... TGGCCGCCGTCCTCGACCTTGAACGTCTGAGA 60300 29 100.0 32 ............................. GGGATCATGCTCCACCACACCGTCACCCCCAA 60361 29 100.0 32 ............................. GACCGCCGCGCCGAGGTGAAGAGGCTTGAGCG 60422 29 100.0 32 ............................. CTCAGCTATCTCGTGGGGTAGTACCTGGGTAC T [60431] 60484 28 93.1 32 .................-......A.... TGTGGCTCGCAGCGGTCGGTTTGTAGGTGAAG 60544 28 93.1 0 .....-...................C... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 97.6 31 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GAGTCGCCTTCCCGATGTCATGCACACCCGCCAGCCACACCGTCAGCAGCCGGCCATCAGCCTCTCCACCCGGAAGCGCCGCGCCGATCAGACCACGCACACGCGCAGGCAGCCACCGGTCCCACAGCAAGCCCGCCACTGCAGCACTGTCCTCGATGTGCTGCCAGAGAGGCAGCCACCCATCGGAGTCCCTGTCATGCTTGGCCCACACCACCAACGCCGGCCCGGCAAGCCGCCCCCTGAGGCCTGAACGCCCCGCCCCCACGCTTGTCATGCCAGATGACTACCGGCATATTCCGGCAAGTGATGGCCATATGGCGAAAACAGCCAAGATCTCATCCAGTTTCCTCGATCTGGAGCCTCGAAGCGCGCCGACTGCTTAGCCTGAGCGGTTGACGATCAGACCAATGAAACGAATGGGCTGCTTGGGCGAATTGCCGGATGCAGTGAAACTGGTTGAGAACCGGCTCCAGGCCACAGAAGAGGGCAGGTCAAGCAGT # Right flank : CGAACCCGCAAGAAGGCGGGCCAGGCCGTCCTCTGCTCCACGCACCCGCGAAAAGACGAGGCGGTCATTCTCGGCAGGTCGTTGCTGCCCTGGGCACGCTGTAGCCCGGCACAAGAGCAGTCCGCCCGGTCGACGTGCGAAGGACTCCCAGGCGGACGCCACTCACCATGCTGCCCCGATTCGGCCGAGACACTGTGAACGCGGCCGACACTGAGCCGAACGAGCAGCACACCGCGCGGAGGTGGTCGAGGCCGCCAGGATCCTCACCGCCGCCAAGCGGACATCGCCTGCGTTCAAGCAGGCCACGCTCGACTTCGCCGCCTCAAGGAAAGCCGCCGAGACCCACGCGGCGCACGCCGAGAGGACCGCCGCCGGTGCCAAAGACGCCCCGAGATGAGACACTGCGCGCGAGGAGCTCGTCAGTCATCGATACAGGCGATAATGCCCAACGGAAGCTGGAATGGGCCCTGCGCAGCCGGCTGGCCGACGCTATCCGCGAC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //