Array 1 78526-74070 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEGO01000019.1 Streptococcus suis strain LS7E, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 78525 36 100.0 30 .................................... ACTTGTACTCAATATCAGGATTAATCATAG 78459 36 100.0 30 .................................... GCTCCCCTCTTTCAATGCGTGCCTGTTCTT 78393 36 100.0 30 .................................... GTGTTTGTCTTTGGAATCAGTATCACTTCC 78327 36 100.0 30 .................................... TTAGGAGGCAGAAAATGATACCGAAGTTTA 78261 36 100.0 30 .................................... TCATGATTCGCAAACATCATATCAACCGTA 78195 36 100.0 30 .................................... TTCTCAAAAGCCTCCTTGACCGGTGCCTTT 78129 36 100.0 30 .................................... GCAGACATAACAAAAACCCTTGTGTTTCAA 78063 36 100.0 30 .................................... AACGGAAATTTTGGGAAATGTCCGTGATAA 77997 36 100.0 30 .................................... CCAGCCCTCAAAAGATAGAACCAGTCTGTC 77931 36 100.0 30 .................................... CGGTTGAGTCGGTGGATGTTGATAATCGGC 77865 36 100.0 30 .................................... ATCTTTCATTTGCGTTGGGGTGAGCATACT 77799 36 100.0 30 .................................... TTATTGATAGTGGGTTTGATATGGAGGTGT 77733 36 100.0 30 .................................... CAGCCACTTGCCCATTGTCTGTCTTAGCTT 77667 36 100.0 30 .................................... GCTATGTTATGTCTGTGTGGTTTGAGGAAT 77601 36 100.0 30 .................................... TAAAAATGAACTTTTTCAACTGGTTAGCAT 77535 36 100.0 30 .................................... AGCTAGAAAAAAATACCAATCCACGTTATC 77469 36 100.0 30 .................................... TTCCAAAAATTTCATATCATCCTCCATAGT 77403 36 100.0 30 .................................... AGAAGCAGTTAGAAGGGCTTCAAATTCAAC 77337 36 100.0 30 .................................... TTGATTTAATTATACCTAAAATAATTCCGT 77271 36 100.0 30 .................................... ATACAGAAAAGAAAAGACGCTGGTAACCTG 77205 36 100.0 30 .................................... AGGCTTCAAAAGTACGCGGTCGTATGAGAT 77139 36 100.0 30 .................................... AGCATGGCTGGGTTGAAGTTATCACACAAG 77073 36 100.0 30 .................................... ACCTCCTCAAAAGAGTCCTTTATTGATTTT 77007 36 100.0 30 .................................... CCACCGAATAATTTAGCAGTCTCTCCATCT 76941 36 100.0 30 .................................... GTCTGATGCTATTGTATCCGACCGACACCA 76875 36 100.0 30 .................................... AGGTCTAGGATAAACTCATCACCCAAATTA 76809 36 100.0 30 .................................... CATTTGATACCGCATCTTTTGCACCGTTGA 76743 36 100.0 30 .................................... CACCTTGTCGATAGTTCATGACCAACTTCA 76677 36 100.0 29 .................................... AGTCTTACTGGATGGAAAGCACAGCATTG 76612 36 100.0 30 .................................... CTAACAGCTACTTTCATAGCTCCCTTTATT 76546 36 100.0 30 .................................... AGCTGAGGTGTCTGTCAATCTCTTTCTTAA 76480 36 100.0 30 .................................... ATGACTGGTTGATACGTAACGGATATGTTT 76414 36 100.0 30 .................................... CTAATCTAAGGCTATCCGACTGTCGCAGGC 76348 36 100.0 30 .................................... TTGTGCCTTATCATCAAAATACATTTGACC 76282 36 100.0 30 .................................... GTCAAGACTTTCTTATGTGTTCATGATTTT 76216 36 100.0 30 .................................... TGCAGGCCATATCGCAGTGCGTCCATAAGG 76150 36 100.0 30 .................................... TTTGCAACTCCAAACTTATTAAATTCAAAC 76084 36 100.0 30 .................................... ACGGATACGATGCTAATGAACGCCTGGTTC 76018 36 100.0 30 .................................... CCTTGGTTCTGTAGAAGAAGATTTAGGCTA 75952 36 100.0 29 .................................... ATTAGTATCTACCACTATACCCACTAAAG 75887 36 100.0 30 .................................... GCAAAACGAAAACTGAAAGAGTACCCTCGC 75821 36 100.0 30 .................................... GTACGTAAGGAGCTGGACCAAAGTCTGCTT 75755 36 100.0 30 .................................... TAAAAATCCTAGGCGGTATCATCGAGTTTC 75689 36 97.2 30 ...A................................ TAAAAATCCTAGGCGGTATCATCGAGTTTC 75623 36 100.0 30 .................................... GTTGGTGTTAGAACGAGCAAAACTGGTGTT 75557 36 100.0 30 .................................... ATAAAAATAATCAAAGTATAAACGTAAAGC 75491 36 100.0 30 .................................... ATTAGCGAAGTCCCATAGTGCTTTAGTTCT 75425 36 100.0 30 .................................... GTAAGATATATATAGTATATCATGCGTGCT 75359 36 100.0 30 .................................... TACTGAATCACTTAATCAAACTACTAAACT 75293 36 100.0 30 .................................... AACAAGCCTTTGAAAACTTTGTTACAGGTT 75227 36 100.0 30 .................................... TCTCTACAAAGGCGATAAGCTACTAGCAAT 75161 36 100.0 30 .................................... GAAAATACCGACTTAGTCACAAACGTGAAG 75095 36 100.0 30 .................................... GTTGGTGTTAGAACGAGCAAAACTGGTGTT 75029 36 100.0 30 .................................... TGGTTGATATTCTTCTGGCACGATGCCATT 74963 36 100.0 30 .................................... CCATCTTCAAAAGTGGTAGTGACTTGGATT 74897 36 100.0 30 .................................... ATAATAAAACATCTCTAAACCTCACAAAGC 74831 36 100.0 30 .................................... ATTAGCGAAGTCCCATAGCGCTTTAGTCCT 74765 36 100.0 30 .................................... GAAGAGTGAACAAAGCGAAAATTAAACGCT 74699 36 100.0 30 .................................... ACACCGTTTGTAAATAAGTGGTAGTCAAGG 74633 36 100.0 30 .................................... AATGAATTTTGCTTTTAGTGAATTAGAGGG 74567 36 100.0 30 .................................... GATGATTCACAATCCATGGACATTTGCCTA 74501 36 100.0 30 .................................... CTTATCTATATGATCTTGTCAATTATAGAG 74435 36 100.0 30 .................................... AAATCGCTACCTATAAGCGTACAGCAGATG 74369 36 100.0 30 .................................... GTTTGGCACGCAAGTCGAAGCAATTGATGC 74303 36 100.0 30 .................................... TGGAGCTGATACAGTCTCTGCTTACAATAT 74237 36 100.0 30 .................................... GATATGCTTATGAAGATTTTGACTATATCA 74171 36 100.0 30 .................................... TAGAGCAGACTGAGCTACTTTCAACTGCTC 74105 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 68 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : AAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAAATAGTCTACGAG # Right flank : CGTTAAAAGACAAATTGATAGGGTAGTTAGTTTTAGAGTTGTGTTGCTCTAAAAAGTTCTTTTAATTCTTAAAAGCAATGTAGCAAAAATATTTAAGTGTCAAAAAGAAAGGGGATTGTAGATGGATTCAAAATCAATTATTATAACGTCTGGTTATAACAGTAGTAGTGAATATTTTAACTTTAATCATCAAAATAATTGAAAGTAAAAAGTATAGATGAATTTGATTTAAGCTTCATTTTTTTAGGATAAAAACTAGTGCACAGACAAGTAATTCTCTACCATAAACTTTCAAAGTTAAAATGATGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTGACTCTTGTCCCACCCCCTTTTCCATGCTATACTAAATATTATCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTAGGAACTGGTTCGACGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //