Array 1 1106-284 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFNF010000098.1 Escherichia coli strain CE1966 NODE_98_length_1166_cov_2.695133, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1105 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 1044 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 983 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 922 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 861 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 800 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 739 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 678 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 617 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 556 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 495 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 434 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 373 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 312 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGTCCGAGGTGCATAAGAGCCAGAACCTAGATCGCGCCACGAGGAAACGAATATGAACG # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 43-255 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFNF010000578.1 Escherichia coli strain CE1966 NODE_578_length_334_cov_1.599222, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 105 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 166 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 227 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 4 29 100.0 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGATAAACCGACCTGTAGGCGAAAAAGGCGCTTCGACGTAAAG # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAAC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //