Array 1 21564-20208 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAHQ01000024.1 Neisseria meningitidis strain Neisseria meningitidis isolate 22705, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 21563 36 94.4 30 ........G...A....................... GCGGAACGGGTTGACAGACTGAATTTGAGT 21497 36 97.2 30 ............A....................... AATCAGACCGACTTTACAACGAAGGTTTGA 21431 36 100.0 30 .................................... TTGGGAGGTGGAAAACCGAATCCTGCACGA 21365 36 100.0 30 .................................... AAGCAAATCATTTTCATAGTCAGCAGCTTC 21299 36 97.2 30 ......................T............. ACGTGAGTTTGTCTATGAGTTCGACGGCGT 21233 36 100.0 30 .................................... TGCTACCAGCGACAACAGGCATTACGCCCA 21167 36 100.0 30 .................................... CCGACCGTGGGAACGACGGTATAGTGGATT 21101 36 100.0 30 .................................... TAAAAAGATACTCATTCTGCCTCCGTATTA 21035 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 20969 36 100.0 30 .................................... TAACGATTGAAAATGAGTACGCATTAAGTA 20903 36 100.0 30 .................................... TCTATCTTAATTTCTCTTTGTTCTTCTTTA 20837 36 100.0 30 .................................... CATTGCGCCCATTTTGTCTATCCGAACAAT 20771 36 100.0 30 .................................... ACCACCGCCGCTTATATAGAAAAGCTGTAA 20705 36 100.0 30 .................................... AAAAAAGTTGCGGGATAAGTTACAGTTTGA 20639 36 100.0 30 .................................... TAATTGATTTTTAAGGTTAATCAGTTTTTG 20573 36 100.0 30 .................................... CTATTTTCCTGCACCTACAACCCCCGAACG 20507 36 100.0 30 .................................... CTTTCTGTGCGATGTATTGAAAAAGCTGAG 20441 36 100.0 30 .................................... ATGCTGGATACGGCATTGATGCTGCAACTT 20375 36 100.0 30 .................................... TTGCAATCCAAGGCTTCAAAATGGCTTGGA 20309 36 100.0 30 .................................... CGCCTGACCTAATATAACCATATGGAAAAA 20243 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.5 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAGCGGTTGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGCTGGAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //