Array 1 255628-256122 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHPIU010000005.1 Bacillus altitudinis strain BD6 assembly_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 255628 32 100.0 34 ................................ AAGAGCGTTATCATAAAGAGCTTTGACCTATCGC 255694 32 100.0 34 ................................ TCTATCGTGAATGATACCTTGCCATGTTTAAAGC 255760 32 96.9 34 ........T....................... ATCAAGAACCAGTAAAGATGATGCGTCTTGAGCT 255826 32 96.9 34 ...................A............ TATTTCTGATTTCAACGAGTCAAAATGGTCGATG 255892 32 96.9 35 ...............................A TACATCAACACCTATTTTGCTAATAGATGAACTGT 255959 32 96.9 34 ..................A............. TCCATGCATCCTGAAATTTCTCCCACACAAAGGT 256025 32 93.8 34 .............A.....G............ GTTAATAGCCGGCAAGCTGCTTCGTTTGGTACTC 256091 32 90.6 0 ...................T.A...C...... | ========== ====== ====== ====== ================================ =================================== ================== 8 32 96.5 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAAAGAAATAGCCGACCGGCTAGGCGAAACGAGACAAAACATCTCAAACATCCACAAAAAAGCGCTCAACAAACTAAAAGAAGAAACAGGGGGAGATGCCCGTGAACGAAGACAAAATCACCAATGGAGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTTGAACAAGAACTTTATATCAAACTCATCGAAAAAGTAGACTGGCTGATTTACCAAGAGGGACCGGGCTTTTGGGAGTTTATTGTGGAATATATGACGAAGTTGTAAGAGGAACTGATGGTGCGAATGTGAGGTGAACATAAAATCCCCGGTGCATTCGCACCTTTTTATTCGACAAAATTGAGAAAAAATGTATATTTTATAAAGGGGAAAACAAAATTCTTTATTGAAAGTTGAGGATTTTACCTATCATTTCCTAAAAAATGTTACAATTAGGGAAGAAATCGCA # Right flank : TTCTCGTCAGTAGGTGGCTTGAAAAATATATTGACAATTGTGCTTGATTTAGGTGTGAAAAACATGACTCTGGCTCAGTAGACATGTTTTTAAATGAATTCAAACCTTTTGATTAAATAATGAATAAGTACCTTTAGAGCAATAGTTTTTAATTAAATAGGATTAATAAAAATTTGGTGCGAATGTGAGGTGAACATAAAATCCCCGGGACATTCGCACCTTTTTATTCGACAAAATTGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCTATATAGAAACTTGAGGGTTTTGACTAGGATTCCCTAAAAAAATGTTATAATTAGGACGGTAATCGCAGTCGCACTCTACTTGAGTGCGTGGATTGAAATATGGACGATCCACCTAAAACGAAACCTTTTCTAATGTCGCACTCTATATGAGTGCGTGGATTGAAATAAATCACTTTCGGCGATCTTTTCCCAAAAAGAAAGTCGCACTCTATATGAGTGTGTG # Questionable array : NO Score: 8.55 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 256466-256697 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHPIU010000005.1 Bacillus altitudinis strain BD6 assembly_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 256466 32 93.8 35 ...........CT................... ATGGACGATCCACCTAAAACGAAACCTTTTCTAAT 256533 32 100.0 34 ................................ AAATCACTTTCGGCGATCTTTTCCCAAAAAGAAA 256599 32 96.9 35 ...................T............ CAGAACGATCCTTGTTACCGACTACAGCAAGGTAT 256666 32 84.4 0 ...........A.......G...AT..T.... | ========== ====== ====== ====== ================================ =================================== ================== 4 32 93.8 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : TCTACATGAGTACGTGGATTGAAATTCCATGCATCCTGAAATTTCTCCCACACAAAGGTGTCGCACTCTACAAGAGTGGGTGGATTGAAATGTTAATAGCCGGCAAGCTGCTTCGTTTGGTACTCGTCGCACTCTACATGAGTGTGAGGACTGAAATTCTCGTCAGTAGGTGGCTTGAAAAATATATTGACAATTGTGCTTGATTTAGGTGTGAAAAACATGACTCTGGCTCAGTAGACATGTTTTTAAATGAATTCAAACCTTTTGATTAAATAATGAATAAGTACCTTTAGAGCAATAGTTTTTAATTAAATAGGATTAATAAAAATTTGGTGCGAATGTGAGGTGAACATAAAATCCCCGGGACATTCGCACCTTTTTATTCGACAAAATTGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCTATATAGAAACTTGAGGGTTTTGACTAGGATTCCCTAAAAAAATGTTATAATTAGGACGGTAATCGCA # Right flank : TGATTGTGTCTTAAACGGTATGACATACTTAGAGATCATGATCTTACAACACCCTCTTTCAGATACAAAAGCCATCAAAATAGACTGTTCATATGTATAGTGAAAACATGACTCCTTGCAGTCATGTTTTTTTCTTCTTCTTTTTCCTAAATAAACCTTAAAAAATCTCAAAATAAGTCGAAATGAAAAGTAGTCATTTAGATTCAAATTTTATCCATTCGTAGTGAATGATGAAGGAGGAATTGGTTTGGGTGAAACGGAGCGAACCGGTAAAGTGGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCCGAAGAAGTCGACTTTGCTTCTAATCATGGTGGGCTGACAGGGGATTCTAGAGAAGTGATGTGGATGGAGTTTTTTCGGAAAATCATTCCTAAAAAATATTCATTAGCACAAGGTGTCATCATTATTGACTCAGAAGGAAATCATTCTAACGAAGTCGATATTGCCGTATTTGATG # Questionable array : NO Score: 6.74 # Score Detail : 1:0, 2:3, 3:3, 4:0.69, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 264355-264977 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHPIU010000005.1 Bacillus altitudinis strain BD6 assembly_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 264355 32 100.0 33 ................................ CCTATAATATGGGGTCTCAATAATGGCTATCAA 264420 32 100.0 34 ................................ TTACTTTTTTAGATATGTGTTTGTAAATTCATTT 264486 32 90.6 33 ........T..........T..........T. TTGCAATTTCCAGGAGTCTCTCAGTCTCTTCGC 264551 32 96.9 36 ................A............... ATTATCCAAGTCCTCCCATCAACCCAGCGACAGCAA 264619 32 96.9 33 ...........T.................... GATGATATGGATAATTTATTGTCTCCCCGAGGG 264684 32 96.9 35 ...........T.................... TTGACCTCTCCGTCCCTTTTCACATAAAATTTGTG 264751 32 90.6 34 ...........T......AT............ TCCTACATAAATTTCCACATGAGTAATTAATTTA 264817 32 93.8 33 ..T...........A................. GTACAGCTTTCGCTTGATGGCAAATTCCTTTGT 264882 32 93.8 33 ...........T.....C.............. ATGTATTCAATTGACTGGTGCGCACTGTTTGAA 264947 31 81.2 0 .............A.....TA......-..GG | ========== ====== ====== ====== ================================ ==================================== ================== 10 32 94.1 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : CTCATGATGCCTGAGACGGTAGGAGAAGCATTCAAAGTAGATGTGATGACACCACATCATTCAGACTACAACAGCGTCAAGCTGGATAAAGGGGGAAGTGTTCCAGCCCCTCGAGACGATGACTCACCAACACCGATCCATTTCTTAACGGTGGTCAACAGCCGCTTTCAACTTCTATTGAAAACAAAAAAGACTCTACCAGAAGAATCGGAATGGCTCGAACTCGCCAAAACCATCTTACTAGGCGCTTTAGAACACGAAGGAATCGGTGCTAAAACAAATGCGGGTTATGGAAGACTTAAAATGGACGACGTCATTTCGTAAGCCATGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTCAGGGGTGAAAACTTAATTCCTATATAGAAACTTAAGGGTTTTGACGAGCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCA # Right flank : GTAGCTTGAAAGAAATGTTGACAGTTGCTCTTGATTTAGGGGTGATAAACATGACTCTAGCTCAGTAGTCATGTTTTTAAATGAATTCAAAGTTGTTGATGAAATAATGAAATAAGTACCTTTAGAGCAATAGTTTTTAATTAAATAGGATTAAGAAAGGTTCGGTGCGAATGTGAGGTGAACATAAAATTCCTGGGGCATTCGCACCTTTTTATTCGACAAAATTGAGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCTATATTGAAAATTGAGGGTTTTGGCTATCATTCCCTACAAAATGTTATAATTAGGGCAGAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATTTTCTCCTTGACGAATTGTGCCACAGCTGTTGGGTCGCACTCTACATGAGTGCGTGGATTGAAATTGATCGTAGAACATGGCCGTGAAATTATCGTCTGGTCGCACTCTACATGAGTGCGTGGATTGAAATAATT # Questionable array : NO Score: 8.32 # Score Detail : 1:0, 2:3, 3:3, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 265310-265605 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHPIU010000005.1 Bacillus altitudinis strain BD6 assembly_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 265310 32 100.0 33 ................................ TTTCTCCTTGACGAATTGTGCCACAGCTGTTGG 265375 32 100.0 34 ................................ TGATCGTAGAACATGGCCGTGAAATTATCGTCTG 265441 32 100.0 33 ................................ AATTATGTACATCCTTTTGGTTATTTCTTGATA 265506 32 96.9 36 ............G................... ATGTACTCTTGCAGTTGTTCATATGACGATTCAGAA 265574 32 78.1 0 ...A.....A..........A.A...CAC... | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 95.0 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : TAATTTAGTTGCACTCTACATAAGTGCGTGGATTGAAATGTACAGCTTTCGCTTGATGGCAAATTCCTTTGTGTCGCACTCTATATGAGCGCGTGGATTGAAATATGTATTCAATTGACTGGTGCGCACTGTTTGAAGTCGCACTCTACAAGAGTGTATGGATTAAGGTAGCTTGAAAGAAATGTTGACAGTTGCTCTTGATTTAGGGGTGATAAACATGACTCTAGCTCAGTAGTCATGTTTTTAAATGAATTCAAAGTTGTTGATGAAATAATGAAATAAGTACCTTTAGAGCAATAGTTTTTAATTAAATAGGATTAAGAAAGGTTCGGTGCGAATGTGAGGTGAACATAAAATTCCTGGGGCATTCGCACCTTTTTATTCGACAAAATTGAGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCTATATTGAAAATTGAGGGTTTTGGCTATCATTCCCTACAAAATGTTATAATTAGGGCAGAAATCGCA # Right flank : TTTCTGCAAATTATATAAAATCAAATACTTATCCATTTCAAAATCTACACAAATGAATAATCATAATAATGTACTTCCCCCCTAAATCCAAGCCCTAAACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATCGCAACAAAAGGATAGTGACCTTTGCTGCGGTAGCGCAAATCAATAAACCGGACTTCATAATGATCCTTGTATTTATCTACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAGGCTGAAATGTTTTCATCCTGTTTGGCAATTTTCATAATCTCAGTATCAGGGACCGGCACACGGTTAAAGGTGTCTAAAATGATAATCTCACTATTCATACTGCGTCCAACATGGAAAGAGGATTTACATTTCACAGCAATACGCCATTGTCTGAACTTCATTGTAG # Questionable array : NO Score: 8.81 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //