Array 1 43120-44674 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJGEX010000004.1 Escherichia coli strain PLATE2_F5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43120 29 100.0 32 ............................. TGCCAGGAGTGTTTTGATAAATATATTAGAGA 43181 29 100.0 32 ............................. GCTTCCTCCGGAGTAGTGGCAATCACATCAAA 43242 29 100.0 32 ............................. TGATTTATCTGGAAGACTTTACTACTAACAGT 43303 29 100.0 32 ............................. GTGGTAAGAAGTGGATCTTTAACATCATCGGT 43364 29 100.0 32 ............................. CCTGGCTACGGCAGGCGTTAATTAATAATCCG 43425 29 100.0 32 ............................. CAATTTTGGCAAGTTGCGATACCCAGGAACAA 43486 29 100.0 32 ............................. AATGCGTGTCTGCCGCTGCTGAGTTTTGCTGG 43547 29 100.0 33 ............................. CATTCATTACCGAAAATGATATAGGTCAATGAA 43609 29 100.0 32 ............................. ATCCGCAACAGTGATGTAACGCTGATTACTGA 43670 29 100.0 32 ............................. GAAATTTCGGAAATTAAATCCGCTCGCGATCG 43731 29 100.0 32 ............................. ACGGTCCACGGCTCACAGGATCCGTGTGTAAA 43792 29 100.0 32 ............................. AGCATCTTCAATAGTGATTTTGATACCCTCGG 43853 29 100.0 32 ............................. TATTAAATGTTAAATATTCCGACCCGCCTCAC 43914 29 100.0 32 ............................. CCCCCAACGACTAAACGCAGCCTCGATTGCCA 43975 29 100.0 32 ............................. CGTTCTTCAAACGCCACCTGGTCAGTGAGTGC 44036 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 44097 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 44158 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 44219 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 44280 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 44341 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 44402 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 44463 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 44524 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 44585 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 44646 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATATAAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 70376-73151 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJGEX010000004.1 Escherichia coli strain PLATE2_F5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 70376 29 100.0 32 ............................. ACCAGATCGCACTGACTGATAATGGTGAACAA 70437 29 100.0 32 ............................. TTTACGCCTATTTTTGCATAAGGTGAGCCAGC 70498 29 100.0 32 ............................. CTCGGGCTGCACATTGACAACGTAGATCCGCC 70559 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCTGTCA 70620 29 100.0 32 ............................. TCGAGACTAGCAACACGATTCGATGCGGTGAG 70681 29 100.0 32 ............................. CGTCTGCTTTCGTTGGTGTGGTTGTCCGTGCA 70742 29 100.0 32 ............................. CGCGCGGGCAGCTCCCTCCGCTCCCTCCTGCG 70803 29 100.0 32 ............................. ACACACCAAAATATTCTGGTGTTTGTTAAGGG 70864 29 100.0 33 ............................. AAATCCAAAAAACTGGGGTATGGTGGCGTGTGG 70926 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 70987 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 71048 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 71109 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 71170 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 71231 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 71292 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 71353 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 71414 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 71475 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 71536 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 71597 29 100.0 33 ............................. GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC 71659 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 71720 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 71781 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 71842 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 71903 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 71964 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 72025 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 72086 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 72147 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 72208 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 72269 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 72330 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 72391 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 72452 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 72513 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 72574 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 72635 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 72696 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 72757 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 72818 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 72879 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 72940 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 73001 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 73062 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 73123 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 46 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //