Array 1 65188-63524 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGVJ01000025.1 Salmonella enterica subsp. enterica serovar Heidelberg strain T_NS-033 NODE_25_length_87653_cov_53.43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 65187 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 65126 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 65065 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 65004 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 64937 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 64876 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 64815 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 64754 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 64693 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 64632 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 64571 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 64510 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 64449 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 64388 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 64327 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 64266 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 64205 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 64144 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 64083 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 63980 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 63919 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 63858 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 63797 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 63736 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 63675 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 63614 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 63553 29 96.6 0 A............................ | A [63526] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 82388-81445 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGVJ01000025.1 Salmonella enterica subsp. enterica serovar Heidelberg strain T_NS-033 NODE_25_length_87653_cov_53.43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 82387 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 82326 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 82265 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 82204 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 82143 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 82082 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 82021 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 81960 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 81899 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 81838 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 81777 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 81716 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 81655 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 81594 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 81533 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 81472 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //