Array 1 257-582 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPPL01000047.1 Actinomyces qiguomingii strain 553 NODE_77_length_12093_cov_141.274216, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 257 37 100.0 35 ..................................... AGCAGCGTCAGTGCTGGCCACCGAAAAACGGAGCG 329 37 100.0 36 ..................................... CGACCACTCCAGGTGGGTGGATCCATCATACGGGTT 402 37 100.0 35 ..................................... CCTTCTACCCGTCGCTCTACCCACCCGGTCTTGCC 474 37 100.0 35 ..................................... GCTGGGGGGCGCCCGTTGAGCTGGAAGACCAGGGC 546 37 97.3 0 ..............T...................... | ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 99.5 36 GTCAGGAAGCACCTCGCACCTCCAGGTGCATTGAGAC # Left flank : TGGTGGGGTGTGGCGGTGAGGTTGCGATTTGGTCTACGGTACAAAGTTTGGTGCGTTTTGACCCCGACTTTTCCGCATGACTTCGTTGAAAGTTGGTGGCTGGAGGGGTCATGGGGGATGTCGGTGGCGCTTGGCTTGTTTTCAACGAAAGGTGGTAGTTTTGAGGTGGTGTTAGCCGGTCTCGTGGGGTGCTTGCGGGGTCGGTGGCGATCTGGCCTCTGGAAGTGGCGGTATGACGCGGTTTCCAGAGGCAGGGG # Right flank : CCGGCACGCATCTGCCGCGTTTTGCGTCTCGAAGACAAGTCAGGAAGCACCTCGCATCCCCGCTGGCTGGTTAGGCGGTGGGTGTCGGCTGGTCCCGACTCCGCGTCGCTGCCGCGAGGTTCTCCGGCGGCCGATCTCGACGCCAGAGTCCGGCGATGAGATGTGCTGCTCGCGTGCTGACGACTAGCGAGTGACGGCTCGGTGCCTCGCGTTGGGCGGCGGGCCGGGCCGGAGCTTCGGGGCGCACGCAATGGCCATCAGGGCAAACCCACCCAATTCCCGGTTTCCCTTGGAAGTACGCGGAACCCGCTTCTGGGGCAGAATCCGGTGGTATCGCTCCAGCGTGCAGCGGGGTCCGCGATGCACGCTGGAGCACTGTCATGACACTCCGATCGGCGGTGAGATCCGCGTAATCACGCGGATTCCTCCACGGCGCTCGCTCCTGAAGCGTGCAGACCCATCGCGCACACCCGCGCAACACCACCCAGCAGGCGTTCCGG # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGAAGCACCTCGCACCTCCAGGTGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 48-449 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPPL01000069.1 Actinomyces qiguomingii strain 553 NODE_122_length_11028_cov_127.348389, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 48 37 100.0 36 ..................................... AAGTAGACGTGTGCCATTTCCCCATGCCTTTCCTAA 121 37 100.0 34 ..................................... GCTACAAAAAGTACTCTCACAGGCCAGTCTGTGA 192 37 100.0 38 ..................................... TTCCCACGTAGGGTCGAAGAAATCGACCACTCTAACGA 267 37 100.0 36 ..................................... ATTGAGCTGGAAAACCAAGGCATCCTGGCCGACCTC 340 37 100.0 37 ..................................... AGAAAGGCCTTCAGCGCGGCGTTGTCTGTGGCAAAAG 414 36 83.8 0 .........................C...-C.G.TC. | ========== ====== ====== ====== ===================================== ====================================== ================== 6 37 97.3 37 GTCAGGAAGCACCTCGCACCTCCAGGTGCATTAAGAC # Left flank : ATCTGGCCTCTGGAAGTGGCGGTATGACGCGGTTTCCAGAGGCAGGGG # Right flank : CGCTCAGCATCGGATGTGGTGGTTCCCGGCCGGGCGCCCGCGTCGATCTCGGCCTTGTGTGCCAGGTACGCAGCGCCTCGGGGCGGGGCGCCCAGCTCCTCGGCGATCCTTCAGATTCGCCCCCTTGGACCGCTCGGGGTCCCTACGGGCCTCCGCAGCCATCCTGGTAGCCCGCTCCCGCAGCCCTCTTCGGGGTACTTCCTTTGTGCACTGCCGGCAGTGATCCTTCCGTGTATTCACTGCCTCCATCAAACCCGGTGCGGTTCAAACATCGCCGCCACCGCCCTAGCCTTGATGTTTCATGGGGTGGTTGGGTTGGGCTTGGGGGGTTCGGGATTGGTTGGGACCGGGGTTGATTATGGCGTGTTGGGGGCGTGTGGGTGTGGGGTGGTGCCGCGTGTCGTCGTGCGGTGGTCGGGCCTTTCCTGGGGCCGGTGCGGGGTTTCCTCCGAGGGGTTGTGGTGGGGTAGGGACAAGATGGCTGGGCTTATGGTGCTGCC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGAAGCACCTCGCACCTCCAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 25307-25054 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPPL01000084.1 Actinomyces qiguomingii strain 553 NODE_151_length_25311_cov_154.688431, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 25306 37 100.0 36 ..................................... GATAGTGGCCAGGCGACAATCAACAATATCATTGGC 25233 37 100.0 36 ..................................... AGGCAGCCGTCTGAGTGGTGTACACCACCACCCGAC 25160 37 97.3 33 ............................T........ GTTCTCGAAGGTGTGACCCGCCGCGGTATTTAC 25090 37 94.6 0 .......................G............T | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 98.0 35 GTCAGGAAGCACCTCGCACCTCCAGGTGCATTGAGAC # Left flank : GGTGTTAGCCGGTCTCGTGGGGTGCTTGCGGGGTCGGTGGCGATCTGGCCTCTGGAAGTGGCGGTATGACGCGGTTTCCAGAGGTAGG # Right flank : GGAGGTGCGCCTGCCTCCCGATCGTCGAGTTCGGTTGTTGTGACGATCGAGTTCGGTTCTGCGCGGTTTTTGGCTTTGGGAGTGGGCCCGGGGTGTGGAGACCCAGTAGGGATGGAGGGCCGGTGGGGTGGAGTGTTCCCGGCGTGCGTGCCGGAACGATCTGGTGGTTTCGTGTGTCCACTGCGGTGGTCGCGGCCGCCGGTGGTTTCGCCACGTGTCGGGCGCCGGATGCTGGGGTGGAGTGTCGGATTTTGGGACAAGCGCTGCCGACGCCAACGTCAAGCGCTGCGGCATCGGTATCACTCCAACGCCCTGTTCACCGCCGCCAACGCCTTCGGGGCGCCTGATGCACGGCTTCTTCACCGCAGGTACTCGTACGTGAGGGACTTAGCGGCCGGGCCCCGCGCCGTTCGCCGGTGCGGGGCCCGGCCCGGTTTCAGGGGAGTTCACCGCATGGACTCACTCCATGGCGCGGATGACTTCCTCCACGGTCTCCTTGG # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGAAGCACCTCGCACCTCCAGGTGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 77964-77494 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPPL01000083.1 Actinomyces qiguomingii strain 553 NODE_145_length_139152_cov_148.038910, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 77963 37 100.0 37 ..................................... GCGCCATCTGGTAGATAGTAGCTTCGACGTCAAAAAA 77889 37 100.0 35 ..................................... GTCCCGCGCCTCTACGCAAGCTTGGTACTCGACGT 77817 37 100.0 35 ..................................... CGGCGAGACTGATCTCGGACTGCCGGTCGGAGAAC 77745 37 100.0 35 ..................................... GTCTTGTCCCGGATTACTGCCGGTTCAGTGAAAGC 77673 37 100.0 34 ..................................... GCGGGCGGCAGGACGTTTGCCACGGCGGCGGCAA 77602 37 97.3 35 ................................A.... ATGTAGCCGTCGGTGTGGCGCATCTTGCCGCGCGA 77530 37 91.9 0 .....A........................C....G. | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 98.5 35 GTCAGGAAGCACCTCGCACCTCCAGGTGCATTGAGAC # Left flank : AGGTGTTTGTTGAAGGCCTCTGGACCGTTCAGCAGAGTCCTAAGTGGCGTACTCAACGGTGAAGTGGCGTAGTAGAGGTCCCGGCGGGGTTGGTGGGTGTTCGAGGTGGTGCTTGCCAGGGGCGTTGGTGGTCGGTGGTGCTGGTTGGGTGCAGTTCAGTGTCCGGGTGGTCGGTGGTGTTGGCTGGGTGTAGGTGGGTGGTGTCCGGGTGTGTGGCGCGTGGTGCTGGTGGGGCGCGCGTGGTTGGTGGGGTGTGGCGGTGAGGTTGCGATTTGGTCTACGGTACAAAGTTTGGTGCGTTTTGACCCCGACTTTTCCGCATGACTTCGTTGAAAGTTGGTGGCTGGAGGGGTCCAAGGGGGTGTCGGTGGCGCTTGGCTTGTTTTCAACGAAAGGTGGTAGTTTTGCCCTGGTGCCAGTCGGTTCCGTGGGGTGCTTGCGGGGTCGGTGGCGATCTGGCCTCTGGAAGTGGCGGAATGACGCGGTTTCCAGAGGCAGGG # Right flank : GCTTGGCGCCCTGGAGTTCGGGGACGGCGTCAACCTTGACCCTGGCCCTGGTGCCTTTCGGCCACAGCCGTCTGCGCAAGAGCGGACCGAAGGCCCGTACTGCGCTGCAGTGTCTTCTACGCCGGTTGAAGGCTTGAATTACGCAGTGGCGCAGCAGGCAGCTATAGGGCGCAATGGATGGATTCACTGTCGGGTCCGCGGGACCGTCGGGCCCAAGCCCGAACGCGTAGCCCACCCACTCCATCGCCTTCGCCACGCCGCGAGATGACGACCTCCGGCACCACAGCGCCAAATACGCGGAGCCCCTTGACGGTGTGAGTAGTCAACCTCGTCGATCAGCGGACGCGCCCGGGGGACCCGCCTCAATTGCGAAGGGTGCGCTTCTCAGGAGAACGCAGTCCGCCTCCAGGAGTCCGGGGTAACTAGACCGCGTTGCCTCCTTGCATCGCGACACTCACATCCAGTCCCGCCCACCGCCACTACGATCCGCCACGTGACCG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGAAGCACCTCGCACCTCCAGGTGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 119498-118240 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPPL01000099.1 Actinomyces qiguomingii strain 553 NODE_197_length_129125_cov_143.628769, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 119497 36 100.0 36 .................................... GGCGAAATAGCGGGGTCGTAACCCGTCCCTGCCGGC 119425 36 100.0 37 .................................... ACGGTGGCGGAGGTGGCCGACAGCTCGACGAACTCGG 119352 36 100.0 36 .................................... CTCCACAAGCTCGCCCGCGTGCTCGCGGTCGTAGGT 119280 36 100.0 35 .................................... CCGTCGTCGTAGATGAACTCAGCTAGTGAGCCGAG 119209 36 100.0 35 .................................... GACCGATCACGCTCGCGCACCCTCAGGTACCTCAA 119138 36 100.0 34 .................................... CCGGCGCTACCCGGTTCGGCCGGTCGACGCCGCG 119068 36 100.0 36 .................................... ACAAGACAGCCGCTCTAGTGGTGGTTGCGGCGCGGA 118996 36 100.0 34 .................................... CGGACCATCCGCCGCCAACCCTCATCATCCACCG 118926 36 100.0 36 .................................... AGGCTGTTTGTAGCGCGTCGGTGAGCGCGCGGGCCT 118854 36 100.0 35 .................................... TGGTTGAACAGGCCGATGTCGACAGAGAATTCTCG 118783 36 100.0 35 .................................... TTGTAGTCCAAGGCTCCCCCTCTCAATGTCTTCCT 118712 36 100.0 36 .................................... AGCGAGGAGGTGCAGTGGGCCGACGAGGACTACCAG 118640 36 100.0 37 .................................... CCCTACGCCCAGGTGTGCGGCGAGCTCGGACTGGGAC 118567 36 100.0 36 .................................... CGGTGCAGCACAGTCACCTGCTCGCCGTGGGGGCGT 118495 36 100.0 37 .................................... TCGTCCGTCAGGAGACCCGCATTGACCAAGCCGTCGA 118422 36 100.0 36 .................................... ATCAGTGACGACACGTCGAAGACCACGGACCGGTCC 118350 36 97.2 37 ..................................A. AGACCTGGGCCGGCGCTGGCCGGGTGCAGTAGCAGTA 118277 36 86.1 0 ..A.........C..GC.A................. | C,G [118243,118245] ========== ====== ====== ====== ==================================== ===================================== ================== 18 36 99.1 36 CTCTTCCCGGTCTCCAAGGCCGGGCTCCATTGAGGC # Left flank : CGCTCCGGTGCCGCCCCGATCCCCGGGGAGCGCTCGAAAGCGTGGTACGGCGCGGTTTTCCGGCAGTTGGAGGATGAGCTTGTGCGATTGGGCAGCTCGTTTTTACACTAGCGCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : ATTGGCGCAAGCCGATGCCGCAGGTCGACAGCCGTCGGCCACACCGCCCCTGCGCCGGCTGTGCGGGCGCAGGCCCACGGGCAAATCGGGCGACTGCAGGGGCCCGGGCCGCCGGAACGCGGCTCGGGCCCTGCTGCTCGGTATTCGGCTCCGGCTTGTACCTGGGTGGATCACATCCCGCCCAGGAACTGGGCGATGAAGATCTTCACGATCATGGCCACGGGGTAGACCATCGCATAGCCGAGTGCCACGCGCGGGTCGGAGCCAGTGCGCTCATTGGCGAAGGCCAGAACCGCAGGTTGGGTCTGCAAACCACCGATCAGGCCGGACAGGCGCGTGCCCCCCATCTTCACGATCCAACGCATGGACGCATACATTCCGAAGCCCACAATCGTGGTGATGATGAACCCGGTGATCAGGATGCGCCACCAGTCGCCGCCGGTGAACGCATTGGCGATCTGACCGCCGGCGCGGACGCCGGCCTGCGCCAGGAAGATCAG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCGGTCTCCAAGGCCGGGCTCCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.10,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [26.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 53080-52746 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPPL01000114.1 Actinomyces qiguomingii strain 553 NODE_326_length_57078_cov_144.723221, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 53079 38 100.0 35 ...................................... GCTGCAGACGCCTGTTGACATCATACAGGCGGACG 53006 38 97.4 36 ...................A.................. TCTCGGCCGCCACCTCTTCGATCAAATTATCGTTCA 52932 38 100.0 37 ...................................... CGTCCATGGCCACCGAGTAGGCGACCAAAGACAATAC 52857 38 100.0 36 ...................................... GAGACCCTGGTGCCAGGGGGCAGGTGCAGTCCAAAA 52783 38 94.7 0 .....................T...............G | ========== ====== ====== ====== ====================================== ===================================== ================== 5 38 98.4 36 GTCAGGAAGCACCTCGCACCTCCAGGTGCATTAAGACA # Left flank : CGGTGGACGGCAAGACCTTGCGCGGCGCCAAGCCCAAGAACAACAACAACAGCAGCCGGGACACCGATAATGGCGACAGTGGCGGCGGTGATGGTGGTGGTGGGGCCCCGCACCTGCTGGCGGCCCTTGACCAGGGCACCGGGGCGGTGGTGGCCCAGCAGCGCGTACAGGATAAGACCAGTGAGATACCCGCCCTGAAACAGCTGCTGGCACCCCATGACCTTACCGGCGCGGTCATCACCGCCGACGCCCTGCACACCCAGACCAGCACCGCCGAGTGGATCACCTCCCGGGGCGCCGACTACCTGCTCACGGTCAAGAACAACCAGCCCAGTCTCAGGGCGAAGCTCAAGGCGCTGCCCTGGAAGGACGTCCCCGCCGTGTCGGGGGTGGACCGCTCTCACGGTAGACGGGTGCGGCGCACCATCAAAGCCGTGGCAACCNNNNNNNNNNATCTTGAGCCTGGAAGTGGCGGTATGGCGCGGTTTCCAGGGGTAGGG # Right flank : GAGGTGAGTCCACCTCCCCATTGCCGAGGTCGGTCCTACGCGGGCTCTTCCGGTTTTGGGGGTGGGAAGGGGGCGATGGCTCAGCAGGGAAGGTAGGTCGGCAGCCCGGTGGGGTGGGATACCCCGGTGCACGTGCCGAGGCGGCTGATGGTTCGTGCGTGCACCCACAGTCGTACAGTCGTGCCGGCCATTGATCCTGCCGCGCACCGGCCGCCGGGCCAGAAGGTCCGAGATCGGCATAAACGCCGTTGATGCTGCCGTGAGCCGCTGCGGCATCGGCATGATTCCAACGTTCTGTTCGCGGCATCCAACGCTGCCCGGGTCGTTTGCGCCGATTCTGGACACTTCCGGACCGCAAGGGGCCGCATGCTTGCCGTTGCGCCGCCCTAACGCCCTGCAGGCTCCGACGGTCGGCGCTACGATCGCTGCGTGCCGCGTCACCGCTCAACGAAGAGATCGTGCAATGGACTCGCAACCGGATGATCCGTCGTCTTCTGTGG # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGAAGCACCTCGCACCTCCAGGTGCATTAAGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 55342-54941 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPPL01000114.1 Actinomyces qiguomingii strain 553 NODE_326_length_57078_cov_144.723221, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 55341 37 100.0 35 ..................................... AGGGATACAATGAAGACAAAGACACAGGCGGCAAG 55269 37 100.0 35 ..................................... ACTGTCAGCAGCACTGAGTCCGAGTACGACATGCT 55197 37 100.0 37 ..................................... GAATGAGAGCCACGAGCCTGCGTAGCTCGCTAGTGAA 55123 37 100.0 35 ..................................... CTCGACCGGTCTTCTCGTACTGAGCCCACCCGGAG 55051 37 100.0 37 ..................................... TCCGCGGCAGACCACGCAAACGTCACAGCATTAGCTA 54977 37 97.3 0 .................................C... | ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 99.5 36 GTCAGGAAGCACCTCGCACCTCCAGGTGCATTGAGAC # Left flank : CGGGGACTATCGGGCGCGCCGGCCCGAATGCCGGCGCCAGGCAACCGTACCCACACCCCCACCAGGACCGCCACCCCCAACCACCCACCTGTGGAAAACCCGCCCATCCCGAACGATCTGCCTGTGGAAAACCTGTCCTCAACCCGCACGGCGCACACCTCCACAGCGGACAACAGCGCGTTACTTGTTCCGGTTTCGGTGCGCGGCTTGTGGTGGTCTCGGTGGCGAGAGTGGCTGGTGGTGCTGGTGGGGCGTGGCGGTGAGGTTGCGATTTGGTCTACGGTACAAAGCTTGGTACGTTTTGACCCCGACTTTTCCGCATGACTTCGTTGAAAGTTGGTGGCTGGAGGGGGTTTGGGGGGTGTCGGTGGCGCTTGGCTTGTTTTCAACGAAAGGTGGTAGTTTTGGCCTGGTGCCAGTCGGTTCCGTGGGGTGCTTGCGGGGCCGGTGGCGATCTTGAGCCTGGAAGTGGCGGTATGGCGCGGTTTCCAGGGGTAGGG # Right flank : TGCTTCGGTGGCATGGTCTGTGGAGCATTTGCTGGTTTCTGGTGCGTGTTTGGGTGGGGTGGCGTGCTAATGACATACTGAGACTGGGAGGCTTATTCACGGCACCGCCAGTCTCCCCATACGATCACGGCTTTTCCGCACAATCGCACGGAAAGCACAGGAATTCCGCAGTGGTGGGTCGCCTCTGTGAACAACCCCCGGTGGTTCCAGTGACTCTGATGTCGTACCTCCTGGTGGTGCGGGCGCGTATACCACTGCCTGGGGGCGCAGACTGTGGGCAACTGGGTTGCGAAGTGCAGAAAGCAGCACGCCGACGCCCGGGAGCAGAAGAAAGCCGCGGGTGTAGAGGAGTTGGCCCGGCTGAAGGCGGAGAACTACAAGCTTCGGATGGAGAATGAGTTCCTAAAAATGCGGCGGCCTTCTTCGCGAAGGAACAGCCGTGACCACCAGGTATGAGCTGATCCGCCGCGAAGAGGGCAACTACCCGATCGCCTGGATGT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGAAGCACCTCGCACCTCCAGGTGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 21354-20957 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPPL01000021.1 Actinomyces qiguomingii strain 553 NODE_38_length_30946_cov_146.675598, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 21353 37 100.0 35 ..................................... GAGCTTCGGCGGTTTGTTTGCAGATATTTTTGGTG 21281 37 100.0 35 ..................................... TAACGTCGACTCGGCATATGAGATTGCTGGAACGG 21209 37 100.0 32 ..................................... CTCGGTAATAGACCCGTCACCATTGCGGTCGA 21140 37 100.0 36 ..................................... CTACGGTGACGTTGGGAGAACGAGGAGCGATCCTGT 21067 37 97.3 37 ...................T................. TAGGAGGAGACAAGGTCGAGTTCACGGACAGCGTTGT 20993 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 99.5 35 GTCAGGAAGCACCTCGCACCTCCAGGTGCATTGAGAC # Left flank : GGGCTCTACTACTCCGGTTAGGGCTCTACTACGCCATTTAGGTGTTTGTTGAAGGGCTCTGGACCGTTCAGCAAAGTCCTAAGTGGCGTACTCAACGGTGAAGTGGCGTAGTAGAGGTCCCGGCGGGGTTGGTGGGTGTTCGAGGTGGCGCTTGCCGGGGGCGTTGGTGGTCGGTGGTGTTGGTTGGGTGCGGGTGGGTGGTGTCCGGGGCTGTGGCGTGCGGTGCTGGTGGGGCGTGTGTGGCTGGTGTGGTGTGGCGGTGAGGTTGCGATTTGGTCTACGGTACAAAGTTTGGTGCGTTTTGACCCTGACTTTTCCGCATGACTTCGTTGAAAGTTGGTGGCTGGAGGGGTCTTGGGGGGTGTCGGTGGCGCTTGGCTTGTTTTCAACGAAAGGTGGTAGTTTTGGGGTGGTGTTAGCCGGTCTCGTGGGGTGCTTGCGGGGTCGGTGGCGATCTGGCCTCTGGAAGTGGCGGTATGACGCGGTTTCCAGAGGTAGGG # Right flank : ACCCGTTAACAACGGGTCAGCGGCGTTGCTCCCCATCGTTGAGTTCGGCTGTTATAACCATCGAGGTCGGTCGACGTTACTGCCGAGTTCGGTTCTGCGCGGGTTTTCCGGCTGAGGGATGGGCAAGGATGTGGGGACCCAGCAGGGGCGTTGGTGGGCCGGTGGTGTGGAGTGATCCCGATGCGAGTGCCGGAACGATCTGGTGGTTTCGTGTGTCCACTGCGGCGGTCACGGCCGCCAGCGGCTCCGCCACGTGCCGGGTGCTGAGCGCTGGGGCGGAGTGCCCAATTTTCGGACAAACAACGCTGGAACTAACGTCAAGCGCTGCGACGTCGGCATCACTCCAACGCTCTACTCGCCGTCACCAACGCCGCCGGGGTAGTTCGTCCCGAATCTGGACACTTCGACACCGCAATGTCTCTCCTCGGCCGGGCCCCTGTTGCTCGGCTTGGAAGTTCTTCCGGTTCGCGCATGTGAAAATGAAGGAAGGTAGGGATGCT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGAAGCACCTCGCACCTCCAGGTGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 302-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPPL01000027.1 Actinomyces qiguomingii strain 553 NODE_47_length_39227_cov_150.612152, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 301 36 100.0 38 .................................... CCACACCACCAGGCGCGGCTTGAGCGCCCGCACAGCCT 227 36 100.0 36 .................................... ATATACCCATTGAAAACGATGTTGTTCTCGTTTATC 155 36 100.0 35 .................................... TTATGGTCGGAGTCGGTGACCTGGCCGCCGGTGAA 84 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 4 36 100.0 37 GTCTTCCCGGTCTTCAGGACCGGGCTCCATTGAGGC # Left flank : TCCTGTTCGGTCTGATCGCCGCCGGGGAGGCCAGCCTGCGGTCCTGGCGCTCTCACCAGTCCGTCCAGACTCGTTAACTCGCTGAAGAGCCGCACGGGCGCCGACCGAGCCGGCGACCGCATCCTCACACCGCGCAACCTCACCGAGACCGGCACCAGTAACACACCGAGACCGACTATGCCTAAAGCGAGGCGGGTACCCTTGAGAACCGTGGCTTCCAGGCATGCGGAGAAGGGCGTCTCATGGCAGCCGTTGACCTCGCCAGCTCCACGAATGACAGCGGAGCTGGCGAGGTCGACGGTCGAGGCCCCACCGGAGACGCGGGCGCTTTGCGAGCGCTCCGGTGCCGGCCGGTTTCCTAGGCAGCGCTCGATTCGTTGCCATGACGCGGATTTCTATCGGTCGGCGCCCCCGTTGGAACAACCGGTTGACCCGTTTCTGAGGCAGCGCTCGCAGAAGCGTGTAAACTCCCTGGTCAGCGGCGGTGAAAACCGCGAGCT # Right flank : CTCGTCCATGCCCAGGGGCTCGACAGCCCAGGCACCGCGGTCTTCCCGG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCGGTCTTCAGGACCGGGCTCCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.30,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 4841-2738 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPPL01000028.1 Actinomyces qiguomingii strain 553 NODE_50_length_4758_cov_103.063263, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4840 29 100.0 32 ............................. TTGGTGCGCGCCGAGTACCGCCGCGCCCACGC 4779 29 100.0 32 ............................. CTCATCTGCGCGACGGCCCCGGCCCGCAGTAG 4718 29 100.0 32 ............................. CTGATTTCGGCGGCCGTCCGTATTATCGGCAA 4657 29 96.6 32 ............................C CCTGGGCCACACACCCCGAGCTACGCCTCGAC 4596 29 100.0 32 ............................. GTGGTGCCGGCCTCGAAGGTGAGGGCGGCGGT 4535 29 100.0 32 ............................. GCCGCATAACCCAAACGGTTGACACCCGAGAG 4474 29 100.0 32 ............................. CGCCTGCTGATGGAGGCCAGCGACCGATACAG 4413 29 96.6 32 ............................C CCGGCGGCCCTCACCGCCCGGGGAGGCAGCCG 4352 29 96.6 32 ..............G.............. CCCGCCTCACATTCACCGCCCCCACCCCCAAC 4291 29 96.6 32 ............................C CCCGCGGTAGCGGGGATGGCCCGGTGTATTAG 4230 29 100.0 32 ............................. AAATGCCTGAGGGGCTGTGGGTGGGACGCATG 4169 29 100.0 32 ............................. ATGACCGGAAGACCCTCTTCGACCTGACGAAA 4108 29 96.6 32 ............................C GGGAAGTCGACGTTCGCGCAGGTGCTCAGCTT 4047 29 100.0 32 ............................. CGCGACGGTTTCCAGTGGCCACCGCGCCGCTG 3986 29 96.6 32 ............................T ACCATGGTCTGACCTGCGCTTCGCAGCTTGTT 3925 29 100.0 32 ............................. TCTGGTGTGGCCCCTCAGCGGATGAACACGGC 3864 29 100.0 32 ............................. CCCGATCTGGACAAGCTGGCGCGCGCGGTCGG 3803 29 96.6 32 ............................C CGGATGGGTTTTCCGGCGCGGCGGATGCGGAC 3742 29 100.0 32 ............................. GCTCTTCCATAGGCCGACGTGGTAGGTAGCTC 3681 29 96.6 32 ............................C GTGGGAGAGGGCGCAGACCGTCTACCTGCGCT 3620 29 100.0 32 ............................. GAGACTCCAATGACTTTCTCGATGAGCCGCCG 3559 29 100.0 32 ............................. AGAGTGCAGGGACCAACTGGGCGGGAGTGCCC 3498 29 100.0 32 ............................. CTCGGCGGACAGTCGATGAGCACGGCGTCGTA 3437 29 96.6 32 ............................C CGCAAGTTCCGGGCGCTGATGCGCCGGGGCCG 3376 29 100.0 32 ............................. GGTGGCGATCTCATCATCCGCCGAATAGCTGG 3315 29 96.6 32 ............................C GCAGCCATGGAGGACCTGGGCGTGACCGTGAC 3254 29 100.0 32 ............................. AAAAAACGGCTGCCAGCAGTCGCATTGCCGGC 3193 29 93.1 32 .....T......................T CCTGGAAGAACGCCGTCGGCCCGGCCATGGGC 3132 29 96.6 32 ............................C GCGCTGTCGTCGACGATCCAGTTTGGTGTCCA 3071 29 96.6 32 ............................C TGCTGGGCCGCTGCGCCCCGGCTGTGCCAGTT 3010 29 100.0 32 ............................. AGGGAGCCGAGCCTGACCCGGACGCCTACCAG 2949 29 100.0 32 ............................. ACCGGCCTCGTCCCCGCTGTCGTACAGCCGGT 2888 29 96.6 32 ............................C TGGGCCGGCGAACGATCATCCTCATTCAACCT 2827 29 96.6 32 ............................C GAGTTCGGCTCCATGGCTGAGCTAGCGGCCGA 2766 29 86.2 0 ...............A...A....G...C | ========== ====== ====== ====== ============================= ================================ ================== 35 29 98.0 32 GTCGACCCCGCGCGAGCGGGGATGATCCG # Left flank : A # Right flank : ACCTCCCACATGCACAGGATGATTCACTTCCGACTGCACCCACCGCCACCGATGCTTCACTCACTCTTGCCCGAACCAGTCCTCTAAGCCGTCTGGAGCTCCGGCCCAGGCCAGCGCCTCCCCCATTTCGTCCGGCCGCAGCAGAATCCGATGAAAGGCATCGGCCACCCGAGCGCACTGCACCTCATCCGCCACTCCGGTGACAACCAGGTGGCATCGCGGCCCGTCTGCATCACCTAGAGACCCTCCGATCGGCGTAACGGTTGGTTCATTCACCTCAGTCGTCTCCCTACGCGGCGCCGCATCCCAGGCCCCGGCGTCGCCCACGCTGACCACGCCGCCGGCGACTTCCCAAGTGCACACGCGCCCAGGACGGCTGGGAAGCCAGAAGCAGCCGCGGGCGAGCAGACCGCGTCCGGCCAGGTCAGCGACGAACTCGCGCAGCCGCCCGGGGTGGAAGGGCAGCTCGGAGGACAGGTCCAAAGTGCGCACGCCGTGCT # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGACCCCGCGCGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 43719-42882 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPPL01000035.1 Actinomyces qiguomingii strain 553 NODE_60_length_43686_cov_139.468201, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 43718 37 100.0 36 ..................................... CGTTGTCGGCATAAAGTTGCCAGCCCATGATAACTC 43645 37 100.0 36 ..................................... GTCACAACGAGAGCTAAAGGGAAGCCCCAGTCTAGC 43572 37 100.0 37 ..................................... GTTGCCCTAGCCGTCGTCGACATCGCCATTGTTGACG 43498 37 100.0 36 ..................................... ATCAGATCGCGCACCCAGTCGTCTAGTCCTTCGTAG 43425 37 100.0 35 ..................................... CTCCGGGTTCGGCGTCTCCGGGTTCGGCGTCTCCG 43353 37 100.0 37 ..................................... CTGCGCCCCTAACAGTGCGAAGGCGCCCTCGACCCCC 43279 37 100.0 35 ..................................... AAGGGCGGCGTACGAGATCGCTTCGCCAGTGAGGG 43207 37 100.0 35 ..................................... GCGCGTAGCTGCGGTGGCAGCGCAGCTTTTACTAA 43135 37 100.0 36 ..................................... GTGCCGGTTCGAGCCAGCCCACCGCCGGTTTACGCC 43062 37 100.0 35 ..................................... GTCACTGGTACGAAGACCCAAAACATCAGGAGACC 42990 37 100.0 35 ..................................... AAACCACGTGAAAACGGCGACGCAGGCCACCATGT 42918 37 75.7 0 ..........................C..CACAGCCT | ========== ====== ====== ====== ===================================== ===================================== ================== 12 37 98.0 36 GTCAGGAAGCACCTCGCACCTCCAGGTGCATTGAGAC # Left flank : TGGCGATCTGGCCTCTGGAAGTGGCGGTATGACGCGGTTTCCAGAGGCAGG # Right flank : TTCACCTACTTCGGCCGAGGGTTCGCTGGTTCCTGCGCAGCTTCACCTCTCCAATAAGCTGTGGGTAGGCCGTGACGAAGCGTTGCCGCCCAACACTCGACCGCCGTCGTCCCCTGCTGTGGCCAGCACCCAGACGGAACGACACCATGGGGCATACGGGCAACTGGTCCCACCCGGAGCCGTCGGAGGTAGCCTTGCCAGGTGGCGAAGACAGCCGGGATTCTGTACGCGGTCCCCCGCTTGGACGTGTGGGTCGTATGCCCCCGCTGTGCCGGCCCCGCTCACGTGGTGCGTCGCGGGGTCTTCTGCACCGCCTGCACCTGGCAGGCCACGGGCGCCGCATCCGGATGGATGTGCGGGTGCTGCGGACGCTGGGAGAACGACAGGCCATTACCCGCCGAGCCGACTCCCGCGGAGCTGTTTTGGCGCTGCCCCTCCTGCGGTCGGCGTGAGACGACAAGAACTAGAGTGTCCGCCCGCTCACGCCCGTCACGCACCTG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGAAGCACCTCGCACCTCCAGGTGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 1388-1132 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPPL01000043.1 Actinomyces qiguomingii strain 553 NODE_72_length_2886_cov_113.890854, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1387 37 100.0 37 ..................................... GCCGTCCGGGTTGGTACGGCGCTCGGCGTACAGGTGG 1313 37 100.0 36 ..................................... CTTCCGCCCACCACGTCCCGCTGATTTCGTCATACC 1240 37 100.0 35 ..................................... ATCGCTCTCGCCGTAGGTCAGCGGGAACGAAACAA 1168 37 91.9 0 .................................G.CG | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 98.0 36 GTCAGGAAGCACCTCGCACCTCCAGGTGCATTAAGAC # Left flank : ACGGGGACTGACGGGGGCGTCGACTCGAGTGTCGACGCCGGGCCACCGTACCCACATGCCCGCCAGGGCTGCCACCCCAAATCATCCGCCTGTGGAAAACCCGCCATCCCGAGCGATCTGCCTGTGGAAAACCCGTCCCCAACCCGCACGGCCCACACCTCCGCAGCGGACAACGGCGCGTTACTTGTTCCGGTTTCGGCGCGCGACTTGTGGTGGTCTCGGTGGCGGGAGTGGCTGGTGGTGCTGGTGGGGTGTGGCGGTGAGGTTGCGATTTGGTCTACGGTACAAAGTTTGGTGCGTTTTGACCCCGACTTTTCCGCATGACTTCGTTGAAAGTTGGTGGCTGGAGGGGTCTGGAGGGGTGTCGGTGGCGCTTGGCTTGTTTTCAACGAAAGGTGGTAGTTTTGGAGTGGTGCCAGTCGGTTCCGTGGGGTGCTTGCGGGGCCGGTGGCGATCTTGAGCCTGGAAGTGGCGGTATGGCGCGGTTTCCAGGGGTAGGG # Right flank : CGGGCGGTGTGTGAGGGCTGTTGCGGGGGCGCCGAGGGTCCCGCTGCCGTTTGGCGGGCGTTGGCTTGGCCAGGTGTTGGCTGGGGGCCTTGCTTCGGGGGCGTCGGGCGCCATGCGATCGAGACGGCGAATCGCTCTCGGGGGCTGGCATCCACGGCTTTGCACTATGGTTAGTGCATGCTTAGTCAGGCGGTACAGCGGACCCTGTTCGTCCCGCTGCTCGGAAGGGCACGTGCGGCACGCCTATGGCCGCACTGTTTTGAGGACGCCTGGGCCCAGGACCTCGCCCTACGCCTGACCGCACGCACGCCCGAACTTGCGGCGGCGGACTTGGGCGACGTCCCCGCCGCCATCTACGCCCTGCGGCATCGGGCGGCAGTAACCGAGGTACGCAGGTACCTTCGGGGCCACCCCGGCGCCGCCGTCGTCGACCTGGGCTGCGGAATGGACAGACTCGTGGACGATGTGGACGACCCCGCGGCGTGCGTCTACTGCCTGGA # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGAAGCACCTCGCACCTCCAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 57884-59194 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPPL01000034.1 Actinomyces qiguomingii strain 553 NODE_59_length_59128_cov_155.084518, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 57884 29 96.6 32 ............................C CGGGCCGACGGCGGGGACCTGCTGGACCGCGT 57945 29 96.6 33 ............................C TACGTGGTCGGGCATGTGTCCTCCAGGATCGAC 58007 29 96.6 32 ............................C ACGCCGTTCTTGTCGGGGATGCCGTAGTTGAG 58068 29 96.6 32 ............................C ACGGTCAAACCATCATCGCGATAACTCTCGCC 58129 29 100.0 32 ............................. ATGGCCCGCTCCCAGAGGGGCCGCGATTACCT 58190 29 100.0 32 ............................. TTGAAGGACCCGTCCAATGTCGCGGTTCTTAA 58251 29 96.6 32 ............................T CCCAAGGCATTCGGAAAGCAGATTCTCTGATG 58312 29 96.6 32 ............................A GCAGCTGAGGATCTTAATGGTGCTATTGAGAA 58373 29 96.6 32 ............................C TCAAAAACCGATAGTGGCAGCCAGGATATTTC 58434 29 100.0 32 ............................. CGAAGAACCCCGCCATGGTGGTGCCGTAGCCG 58495 29 96.6 32 ............................C GCCATCTCAATAACGTCATACTGTTCCTGGAT 58556 29 100.0 32 ............................. ACCATCAGTGTTAAGGTTTCCGAGGAAGACCT 58617 29 96.6 32 ............................C ACGAATTCATTCATCGCGCTAGCGCTTGCCAT 58678 29 96.6 32 ............................T CGGTCCCGCGGAACAGGGGACGATCAAGATCA 58739 29 96.6 32 ............................T CAACACAGAGCGTTATTGACATCCTTACGGAA 58800 29 100.0 32 ............................. AACGGATCGAATGCCATCACGATCACCGGTCC 58861 29 96.6 32 ............................C TGGACGCCGCCCTCAACGATCCCCGGATCACC 58922 29 100.0 32 ............................. CGGACTTTGACCGGCTCTACCGCGCTCTCCGC 58983 29 96.6 32 ............................T TCGGGTACAGGGTTAGGCCATTGTGATAGGGA 59044 29 100.0 32 ............................. TTCTACGGCGACCGGGCCGCCTGGGACCGGTA 59105 29 100.0 32 ............................. TTCGACTCTTCCCCGGCGGTCTGGTATAGCGA 59166 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.0 32 GTCGACCCCGCGCGAGCGGGGATGATCCG # Left flank : GCGGCGACTAGTTGCCGGTGGCGCGAACTATTCGGAAGAGGATGCAGGCGGATGGTAGTGCTGATTCTCTCCGCCGCACCTGCTTCTTTGCGCGGCGCCATGACACGTTGGCTGCTCGAAGTGAGCCCGGGCGTGTTCGTCGGGCATCTGTCCGCCAGGGTGCGTGAACAACTATGGGAGCTCGTCAGGGCATACATAGGCGACGGTAGGGCACTGCTCATCTGGTCTGCGCGCTCTGAGCAGCACTTCGAAATCGCATCACTTGGTCATGACCGCGATCCCGTCGATATCGAGGGCTGCATCGTGATGCGCACACCGTACCGGCAGATCGAAGGGGCCAAGTCGATTCCCGGCGCAGTAAAGCCCGCCAAAGAATCATGGTCGATCGCAGCCAGACGCCGCCGCTTCCGCAACACGGCGGAGCGGGCACTAGGTCAGCAGTAAAGGAATCACGTGTAGAATCTGCCTTCGGGGCGTTGGGAATCCAAGGATCTACAAGC # Right flank : TTAGGGAAGCCCGGATTA # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGACCCCGCGCGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //