Array 1 45640-46583 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJDE01000008.1 Escherichia coli strain C56 NODE_8_length_131116_cov_37.826845, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 45640 29 100.0 32 ............................. GGCGACCGGCAGGCGGCCTATGCGTTTTTCAC 45701 29 100.0 32 ............................. GCCTTATCTCTGCTTGGATTCTCTGCTGATGT 45762 29 100.0 32 ............................. CGGCGCACACGTTGTATTTGTGCTGCCTATGC 45823 29 100.0 32 ............................. CCCACCAGCGCGTTTTTTGCCGGGGCCATAGT 45884 29 100.0 32 ............................. GCAATGCTCGTACGCCGTCTCACTCCGCGTGA 45945 29 100.0 32 ............................. CGGGGGCGCGGGGTGTGGACGCATTCACAGCA 46006 29 100.0 32 ............................. TATATGCAGTGCTGACAGACCGGGGGGCGCAA 46067 29 100.0 32 ............................. TCCGCAACAACTCAGAGAACCAGACACCAAGC 46128 29 100.0 32 ............................. TTTCGCCGCCGGGAAAATTTATATTAACGTTG 46189 29 100.0 32 ............................. CGAAGCACGTCGGGGACCGTAAGGCGTTTGAA 46250 29 100.0 32 ............................. ACGCCGCTATGAAGTTGAGGAAAGGGCAAAAA 46311 29 100.0 32 ............................. TGGGGGCGATTGACGAGCAGGCGCGTACCGTT 46372 29 100.0 32 ............................. CAATCCACGCCGAAGCGCTGGAAATGGAAAAA 46433 29 100.0 32 ............................. TTTACCTGCTCGGTGATATCGTCCTGCAAATC 46494 29 100.0 32 ............................. GGTACAAAAGAGGCCCCATTCTGGCAGGGCTC 46555 29 93.1 0 A...........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTTTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTGAAGACTTCTACTCATTTATATTCTTTGTCGTCTCTGAAAAACATCCATTTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGGTTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCATTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTAATAAGCAACATATCCACGTAACACCTCATGTTCAGAATAGCTCGCCATATATGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATGCTTAAACCGTTAAGAAATTTTCATATATTATTTTTTTTAATGTTGAATTAATGTCTATTAATTTTTTCTTCAGGATAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCAGAAAAATTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 72072-72711 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJDE01000008.1 Escherichia coli strain C56 NODE_8_length_131116_cov_37.826845, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 72072 29 100.0 32 ............................. TGTCCGAATTACTACACCGCCGAACAAAACGC 72133 29 96.6 32 ............................A TGATCGCCGCCATGATTACTTGCCTTTTTTGT 72194 29 100.0 32 ............................. GTCAGCACCGCGTGCTCTGCCTGCAGGCTGTC 72255 29 100.0 32 ............................. TCTATATCGGTGCATATATCCCCGACGAAAAA 72316 29 100.0 32 ............................. TATTCATATAAATCCTTATTTTAGATACAGCG 72377 29 100.0 32 ............................. CCAGCTTCATAGATCTGGCTCACGTAGAGCGC 72438 29 96.6 32 ............................A GCGGCGCATAACTGATAAACAATAAATGCCGC 72499 29 100.0 33 ............................. GGCCATCACGGTTTTATTCAGGTTACTGCAGAC 72561 29 100.0 32 ............................. CTGCGCGATCCAGCGCTCGACTTTGATCGTGA 72622 29 100.0 32 ............................. GGCGCACTGGATGCGATGATGGATATCACTTA 72683 28 75.9 0 ..A........C..T....A..-.C...C | T [72702] ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGGGAAATACAGCCGCCGGCCCCACCTGAAGATGCGCAGCCTGTTGCTATTCCACTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGCTGGAAGTCCGTGCAGGAGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATATCCGGACTGGCGGAGGAGGGCAATGTAGTGATGGCATGGGCAACGAATACAGAATCGGGATTTGAGTTCCAGACATTTGGAGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTTACCTGTTTAAAAACAAGGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATCAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : CAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCTTTATCAATATGTTGCTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCTTTATTCCCAAGATTCCAGTTTGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACATCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //