Array 1 2872272-2879158 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACLCQ010000001.1 Acinetobacter baumannii strain AB1 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 2872272 29 100.0 31 ............................. AAAGGCATGGCTGTACTGGCTAAACATTTTG 2872332 29 96.6 31 ............................T TCACGCCATTAGGATAAACTGTGGTGCCAGT 2872392 29 100.0 31 ............................. CTTTCGCTTGCTGGTGCTGGAAAGCGTAATA 2872452 29 96.6 31 ............................G TACCAAGTCACAAACAAGTCAATTGGATCTA 2872512 29 96.6 31 ............................T AAAATCGCGTAGCCCATTAAACGACGGAAAA 2872572 29 100.0 31 ............................. TGAGATGTGCAGACGTATTTGCACAGGGTAT 2872632 29 96.6 31 ............................T TAACAGATCAAAAACCGTGGTTCGGGCACCC 2872692 29 96.6 31 ............................C TAACGAATTAACGCGATACACACGTGTTAAT 2872752 29 96.6 31 ............................T TTAATGATTGGCTTATGGTTCGTTGGCATTA 2872812 29 96.6 31 ............................G GAGGAAGATCAATCTGTTTTATATGCGTTTA 2872872 29 100.0 31 ............................. AAGAACAGGTCGAAGAAGCGATTAAAGCTTT 2872932 29 100.0 31 ............................. TGCAGATAAAACAGTAAAACTATATGAAAGC 2872992 29 96.6 31 ............................T AACACAGTGCAAGGAGAGCCGCGTAGAAACA 2873052 29 100.0 31 ............................. ATTGAAACGGTTTTACGTGATGCAGTAGTTG 2873112 29 100.0 31 ............................. GCAACAAGAATGTCGCCGAGTACAGGCAAGC 2873172 29 96.6 31 ............................T TTACGTGTTAAATCAGTGTAAACATAGTTAC 2873232 29 96.6 31 ............................T TGTAGTTCATCTGCCTAGCTCCACCATGTTC 2873292 29 100.0 31 ............................. AGGAAGAGCAGCAAGCAGATGCAGAGCGATA 2873352 29 96.6 31 ............................T CTTTGAATGTGGTCATGGCAGCACCTCAAAG 2873412 29 100.0 31 ............................. TGACTCACCTCTTTTGTTAATATCTTCATGC 2873472 29 96.6 31 ............................C ATAACAATCCATACAATAGAGTTTGGTGTTT 2873532 29 100.0 31 ............................. GCCACAACGCTTTGTTGACCAAGCTTGTAAT 2873592 29 96.6 31 ............................T TTGCCGCTGTGCCCATCTTCAAAGAATTTAA 2873652 29 96.6 31 ............................T CACTGTAATTTGGGTCATTTGCTTTGTTGAT 2873712 29 96.6 31 ............................T ATGCCTTTACACATGCAAAGTATCTCTATGT 2873772 29 96.6 31 ............................T TAAAACCATAACCAATAGGCAAGGCTGTACC 2873832 29 96.6 31 ............................C ATTGGCATAAGTTAATCTCCTTACTGAACGT 2873892 29 100.0 31 ............................. ACATCAGTTATCTCTATCTTTGGGATCATAA 2873952 29 96.6 31 ............................T TAATCGCACCCATCGCATCTTGGACATTACC 2874012 29 96.6 31 ............................T CGGATTCGGTGGAATTAGAAACCCTAGACAA 2874072 29 100.0 31 ............................. TATAAATTTAGAATTCCATTAAAGTCATTTC 2874132 29 96.6 31 ............................T TAGGTGCAGCAAGCTCTAATTGTTTTTGAGC 2874192 29 96.6 31 ............................T CTACCCTGAATCCTGATTCCTTTAACACTGA 2874252 29 100.0 31 ............................. AGATAGGTCCAATAAACCCGATCACCGATTT 2874312 29 96.6 31 ............................T TGAGGATTATGTCGATAACGAAAAAGCTAAT 2874372 29 100.0 31 ............................. TCAACACCGACACGAGTTTGAGCCAATGTAA 2874432 29 100.0 31 ............................. TGAAGCTGTTTAGCGAATTTGGAGAGCTTGC 2874492 29 96.6 31 ............................T ACATGGGCTTTTAGCCACTCCAGAATCATGT 2874552 29 96.6 31 ............................C AGAGCCTCCGCCTGTCGGTTTTGGTTGTGAT 2874612 29 96.6 31 ............................G TCTTGGTCTTGGCTGCTTAACAATTCGGTTT 2874672 29 96.6 31 ............................G TGAGCGAGATTACTTTGTTAATCAGTACAAA 2874732 29 96.6 31 ............................C AGTGTAAATACGTACTGGAGGGCAAATGGGA 2874792 29 100.0 31 ............................. CTATAGATTCACCCTATATAAGTTTTACTTA 2874852 29 96.6 31 ............................C AGTAAATGTGGCTGCTACCATTAAGGGTATT 2874912 29 100.0 31 ............................. ATATGACCACGGACACTTTGTATCACGTATT 2874972 29 96.6 31 ............................T TTCATGCGGGCCTTGATTTCCAGATCAGCAG 2875032 29 100.0 31 ............................. AGCGAACACCATTGCCATCAGCAACAGATTC 2875092 29 100.0 31 ............................. GAACCTCCGCCTGTTGGTTTTGGTTGTGATG 2875152 29 100.0 31 ............................. CCCAGCTAATTAGGCGCTCTTTGTATGGCTT 2875212 29 96.6 31 ............................C CACTTAGAACGTACTGTCTTAAAATCGTTAA 2875272 29 100.0 31 ............................. AAGAGCAAGCTGATATGTGGCTCAAGAACGA 2875332 29 96.6 31 ............................T TAATTGGATCTCGTTTAAGTTGGGTGCTTTT 2875392 29 100.0 31 ............................. TAATGCCAGCGCCAGAAATGGTGTCTGATAA 2875452 29 100.0 31 ............................. GCCGCTAACGCTCAAGCTCAGGCGTTATTAA 2875512 29 100.0 31 ............................. AAGGAGCCAGTTGCAGAGTGGATGCTGTTTA 2875572 29 100.0 31 ............................. GTCTTGATGATTTTGTCATTCTCGCCGTGTA 2875632 29 96.6 31 ............................T ACGGCGCGGAAACCAGTGGGGAAATGTATTT 2875692 29 96.6 31 ............................G TTTGGTTGAGGTTGATGACGTTCTTAAATCA 2875752 29 96.6 31 ............................C GTATGGAAAACCGTTCGTCGTGTGACTGATG 2875812 29 96.6 31 ............................T ATATGAACACATTAATGTATTGCTCAACACA 2875872 29 96.6 31 ............................T GAATTACGTGCATCATTGGTTCCAGCAAATA 2875932 29 100.0 31 ............................. TCCGGTGAAGCCCCGAACATTTCAATGAAAG 2875992 29 100.0 31 ............................. ATGTTATTTAGATCTGCTGTCTCCCAATCTT 2876052 29 96.6 31 ............................T GATTGAGCAGAAACGGTTTTAGATGCAACTA 2876112 29 96.6 31 ............................T TTTTGGATGATTAGGAGTTACATCACAACTT 2876172 29 96.6 31 ............................T TGCATAGCAGCAATTGCAAACTGATCACGTA 2876232 29 96.6 31 ............................T TCCAGTATTGGTTGTTATTCTTGCCAATACC 2876292 29 100.0 31 ............................. TAAAGGAGCCAGCCATGAGTGAGTTTAAAGT 2876352 29 96.6 31 ............................T GAATTACGTGCATCATTGGTTCCAGCAAATA 2876412 29 100.0 31 ............................. AAGCATCAAATTGATTTTGATTTATGGGCAC 2876472 29 96.6 31 ............................T GAGCCAATGTTGTAAGTCAGCGATACCAAAG 2876532 29 96.6 31 ............................T CAATTGGAACGATATCAGGCTAATAACTACG 2876592 29 100.0 31 ............................. AGTAAACGTAATGAGCAGTTACAAGCTGCTA 2876652 29 100.0 31 ............................. ACAACGGGTGAACCTGTTACGCCAAAACCCT 2876712 29 96.6 31 ............................C TGATGCTCAGGATCCAAATGCACCTGATGTA 2876772 29 96.6 31 ............................T TATGATGCTGTAGCGTCTCAAATCATGTCTG 2876832 29 100.0 31 ............................. GTTACCACAAGTGATAACACAGCAAGACCAA 2876892 29 100.0 31 ............................. ATTCGGATCTGATTAACTGGACTGTCGGTCT 2876952 29 100.0 31 ............................. TTCACCAGCCTCGGCTAGACTTGATGCTCCT 2877012 29 96.6 31 ............................T TTAACCGAGATCAAGAAGTAATTGCTTGGGC 2877072 29 96.6 31 ............................T ACAATACGACGTGATAATGCAACTAAAGCCC 2877132 29 100.0 31 ............................. CGGTAAAATTAAGTTACCTGCTAAACTTGTG 2877192 29 100.0 31 ............................. ATCAAAGCCTTAATCGCTAAATCAACTGCTA 2877252 29 96.6 31 ............................T TTTGTTTATACGGTTAATAAATCAGTACAAT 2877312 29 100.0 31 ............................. TTACACAGGCATGGCAATGAAAGTGTTCTTT 2877372 29 96.6 31 ............................C CTCGTGGAAAAACTTAAAAGCCATCTTCGTA 2877432 29 96.6 31 ............................T TCATCTAAATGTTTTTGACGTTCAGCTTCAG 2877492 29 96.6 31 ............................T AGACAGCTCATTTAATCCGGGTGAGAAACAG 2877552 29 100.0 31 ............................. GTTCAGCATTCCCCTTCGGGGTCAACGTCCA 2877612 29 100.0 31 ............................. TTACCCCTCCTTACTTTCTGCTTTAACTTCT 2877672 29 100.0 31 ............................. AAACACCAAGCCATAAAATTAATTACAGCAA 2877732 29 96.6 31 ............................T GTTTTGCTAATTTATCAATATCGATTTTCAC 2877792 29 93.1 31 ...AC........................ CAGGGGTCAAGTTCAGAAGATTTACGTTACA 2877852 29 82.8 31 ...GC.......CC..............G GTATTAGTGCGAATTGGCTTTTAGCCCACGC 2877912 29 89.7 31 ....C.......G...............T TAAATGCTCAACTATTTCTGTAGCTAATGGA 2877972 28 82.8 31 ...GC....T...-..............T TCAAATGATTTAATGAGCTTGTAGCCATTTT 2878031 29 89.7 31 ...GC.......T................ CGTCTTCTAATGATGGACTTTAATCCAATAT 2878091 29 82.8 31 A..GA.......TC............... TCTCACTGAAGATATGACCATCACTTTCTTC 2878151 29 82.8 31 ..CGC.......CC............... AGCCATTTACTTTGATAAAGCGTCACATAGC 2878211 29 96.6 31 ............................T AGGAAATTCTATCGGCCCAGCATCTACAAAT 2878271 29 100.0 31 ............................. AGAGACACATCGTTAATAATCTCTTGTGCGG 2878331 29 100.0 31 ............................. TGAGCAAATTATCAATTGATCTATCTGCAAG 2878391 29 89.7 31 ............CC..............T AGACGGTGTTACCTGTAGGCGGTGTCTACTG 2878451 29 89.7 31 ...TC.......C................ TCGTTTGAATAATATGGACAATCCAGCCAAT 2878511 29 86.2 31 ....G.......TC..............G CAGCATCAAACGAGATATTGGCTAACATATT 2878571 29 79.3 31 ...G......A.CC...........C..C AAATAGTTTTAGCTATCTGAGCATTTAATTT 2878631 29 89.7 31 ....G.......C...............T TCATCACGTAGCCTTTTACACGCATCTTGCG 2878691 29 93.1 50 ....................C.......T GTACGCTGAGTATTGATATTGACATTCAGGGCATTCAGAATTTGGCGCTC 2878770 29 89.7 30 ....G........C..............C CAGTTTGCTGAAAATCACCAATACGGTCTT G [2878794] 2878830 29 79.3 31 ...TC......TCC..............G ATTCTATGAGCGTGACCATGACTCTATTTAA 2878890 29 89.7 31 ...GC.......C................ TTATCCAGATAAAACCATATCTACAAAGTGG 2878950 29 93.1 31 ....G.......................G ATCATCTACAGTGATTGAATAAACGGTTTTT 2879010 29 82.8 31 ...GC......TG...............C AACGACGACGCCGTGTGTTTGTTATCGGAAG 2879070 29 79.3 31 ...GC....T..TC..............C AAGTAGGATTTGCAGCCCCAATAGTCTTTAT 2879130 29 75.9 0 ....G....T...C.A........AT..T | ========== ====== ====== ====== ============================= ================================================== ================== 115 29 96.0 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCAAGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGAATGGGAATTAGTTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTTATGCCAGTCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTGAATCTTAAAAAGAAAAAACCCCGAAACTTACGTTTCAGGGCTTTTTCGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTACA # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-77] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //