Array 1 255606-255099 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAH01000004.1 Pectobacterium odoriferum strain Q40 Scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 255605 28 100.0 32 ............................ TGACGGAACGGGCAGGGTTTTACTCTCTGATC 255545 28 100.0 32 ............................ GTTAACTCTCCCAGCGTCGGGTGAATTAATGT 255485 28 100.0 32 ............................ AAATACCGGATCGCCTGTGCGGCTCCTCCGAT 255425 28 100.0 32 ............................ TTCCGCGCAACAAAGTGGCTCAACTAAAGGCC 255365 28 100.0 32 ............................ TGTTCACGTGATAAGTTTTCAGTAGATGAAGT 255305 28 100.0 32 ............................ AACATCGATGATCTGCCGGACATGCCGGAGAT 255245 28 100.0 32 ............................ GAAGTGTCGAAATGGTTACGAGCGAATCTGGA 255185 28 96.4 32 ...........T................ TGGCACTGGTCCATAGGCGCTGGAGAAGATGA 255125 27 75.0 0 ...........T.C..A...-..C..GG | ========== ====== ====== ====== ============================ ================================ ================== 9 28 96.8 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GGCGCTCTCTACACTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGCGTGTAATCCCGTACCTGACGGCGTGAAATTTCGCACCGTGCGTCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTACGCCGACGCTCGGTCAGCAAAGGCTGGCTGACGGAAGCGGAAGCCGCAGCACGTATCCCCGATGCCGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATCAAAAGCTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACGCCCCTGTCGCTGGCCGCTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGACCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGCCAAAAAAAGTGATATTTCCTTTAATAATCTGGTGGTTAGCGTAAAAACTTAACG # Right flank : CTTATCGGGATGCGTCGCTGGCGCGACGCATTTCGGGGAGCTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTGCCGAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGTTCATCCTCCGGCACTAAACGATTAAAGAAACTCTCAAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGACGCAGTGCGACAACCTGCGCCAGTATCTCGTCGGTCACCAGATGGAAGCCTCTGCTTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATCGGCGTCCCCTGCTATCAGGCTTCACGCGCCAGAATAGGT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 264183-265291 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAH01000004.1 Pectobacterium odoriferum strain Q40 Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 264183 28 100.0 32 ............................ GATACGCTCGCCAATCTGGCGACGAATGGGTT 264243 28 100.0 32 ............................ TGTATCAGGATGCAACGCGTAGCGATGAGTTA 264303 28 100.0 32 ............................ GTACGCAATGGCTGCGTGATCGCTTGCTAAAT 264363 28 100.0 33 ............................ CTGTGCCTTCCAGGTCGAGGGAGCCACCGACAG 264424 28 100.0 32 ............................ ATCACTCACGCTGGCAAATCGCCTGTATCAGG 264484 28 100.0 32 ............................ CGTCGCACTTGCTGGCATGCTGGACGTCATCA 264544 28 100.0 32 ............................ ATCGTGGATGGACAGGGGCGAACCAGCCAAAT 264604 28 100.0 32 ............................ TCAAGCCCTGTCACATCAGACGATACGGAAAT 264664 28 100.0 32 ............................ AGTATCAAACGTTTGGTTTTCCCGAATACATC 264724 28 100.0 32 ............................ GTTGGCACCTTGTTAGCCCATGACTTCGTTGC 264784 28 100.0 32 ............................ TGAGTCGCGCAGGTCTGCGTTAACAGGTCGCT 264844 28 96.4 32 .................T.......... TGTGTGAGATAGAAATGCATGTCGCCTGTGTC 264904 28 100.0 32 ............................ AGTAGAGGCATTAAAGGTCATGGACGCATGGG 264964 28 100.0 32 ............................ TCGCGTGCTGACTCATGGCTGCGATCAAAATC 265024 28 100.0 32 ............................ GCACTGGTGCTGCCAGTTTTTCAAAGATGGAT 265084 28 100.0 32 ............................ TCGCGATGTTACATCCGCAGCGTAAAGTATTC 265144 28 100.0 32 ............................ AGCAGTTTGATACGTCGCTGGCGGATTTTGAC 265204 28 100.0 32 ............................ GTTAATTAGAACTCGCAATGCCAGCGATTCAG 265264 28 75.0 0 ...........C.C......T.C.TCC. | ========== ====== ====== ====== ============================ ================================= ================== 19 28 98.5 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTCCCCAGCATGACAACGCTGGTATTGGCGATGGGGATATTCCAATACAGCGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCATGCTAACTATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGAAAAATGGTGGCTGCAAAAAATATTACCCAAACGCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATAAGTTACCGCTGAGCTGAAAAAAAGGGTTTTTGCGGCGAAAATGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTAATCGGGCTACT # Right flank : ACGACCTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACCCCCCTTAAATAACGAATATTGATGGCCTTCTTTCGTAACGTTTTTAAGTAATGAGTTTCTTTTAGAGGGAATGAAAAATTGTGGGGATGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTGTCCTTATAGGGGAATAGCACGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAACAGCATGCAGATATTAATTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAATATTCATGCCATATTGACTGCACAGGAAGCAACGTATTTTTTAAAGACGTTATGCACACCCAATCCTAATGACTCTTGGAAAACAGCAATATTTGGCTGTACCGATCCCATCTCGTCGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 273674-272626 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAH01000004.1 Pectobacterium odoriferum strain Q40 Scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 273673 28 100.0 32 ............................ GGACGTACTCATCGCTAGCACACACATTAAGA 273613 28 100.0 32 ............................ TGTGTCAGCAGGGCCTTTCCCTTTGTTTACGC 273553 28 100.0 32 ............................ GCTTAGCGATACGATCAAGGCTTGCGCCGATG 273493 28 100.0 32 ............................ CTGCCATTCGTTCCCCTTTAGCAATTGGACGG 273433 28 100.0 32 ............................ CATTCCTGCGCCACCATTTTCTTTTGTTTCTT 273373 28 100.0 32 ............................ AAATGAACAGATTTTCTCGCGCGCGACCTTCC 273313 28 100.0 32 ............................ AATGAATTATCTAATTGATGATATTGGCGTTG 273253 28 100.0 32 ............................ ACCATAGCCTTTCGGCTGGCCTGCCATCCCAT 273193 28 100.0 32 ............................ GTGTCAGCGTCACGCAAAATTGCGAAATTATA 273133 28 100.0 32 ............................ ACCAGCATCGCGGGTTGTTGTGAAGTTCTGGA 273073 28 100.0 32 ............................ ACCAGCATCGCGGGTTGTTGTGAAGTTCTGGA 273013 28 100.0 32 ............................ TGGCGCAATAGTCGGCTGTGTACCGGACCGTA 272953 28 100.0 32 ............................ AGCATCAATGGAGCGCATGAAATTAACTGACT 272893 28 100.0 32 ............................ GCTGGTCCGCGTCGAACTGATTCTGCAGCAGA 272833 28 100.0 32 ............................ TATCCCGTAATCACAGCAGCAGGCTTTTACGT 272773 28 100.0 32 ............................ TGCGGCGGTTATATCTTTCATGGTGCAGCAGG 272713 28 100.0 32 ............................ GGTAGGTGAGGTTGCGCGGCAAGTTGGCGTCA 272653 28 82.1 0 ...........AGC......T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATCCTGGCGTTCTGTCATAAAGTCAGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTGACCGGACGCAGTATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACGCCTTCAAAGTCCATATCACGTGGCAAACGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGATGCACCTCCTCCTTAATACAGAATTCAGCCAGCTACTTACCGTTTATTATTGCTGGCTAAAACATCAGCTAAGTATAGATATTAATCACTCGACTATATATCCATAGCATATGCAGATACTTGGCATAGGCCTATCGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTTACGCATCGCCGTAACTCATTGATTTTTAATTTCGATTATCTATGCTGATAAAAAAGGGTTTTTCAGGAAAAATGGTTTATTTCCTTTTAAAATTAGTTAACTACCGTAAAATATGAACG # Right flank : ATAAAACGCGCCGAAAATCAGTAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCTCACTGCCTGACACTGTTTAGGGAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACACTGCTACAGACTAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCGCAGCTGATTCTCGGCTATCATGCCCGCCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGGTTGATTGAAGTGCGGTTGATCAATCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACCCTGATTAGCCAGATTCTGTCGCAGAACAAGAGCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //