Array 1 326623-326415 **** Predicted by CRISPRDetect 2.4 *** >NZ_QESX01000005.1 Pectobacterium polaris strain SS28 SS5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 326622 28 92.9 32 A..T........................ TGAACTTGTGCCTGAATGCTGGTTTATTGCTG 326562 28 96.4 32 ..........A................. GAAATAGCTTTCATCAACAGCAGATTCAAATT 326502 28 100.0 32 ............................ ATGCGCGATTTTCTCAATGCGAAAGAAGAGAT 326442 28 85.7 0 ...........A.C......T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 93.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AACCAACGGATGTCGGCGGCACGCTATTTGGCGGCATGTTCGATGCGATGTTCGATTTGATCTACTGGTCTTGTGCTGCATCGGGATTCTGCTTTCTGGCGCTCTTTCGACTTTCAGGATGGCGTGTTGCCTGGATACTCGCGGGGCTGGTGCAAATCGGTATCAGCGCCCTGTGGCGCATTCAATATTGGCAAGCGTATGAAAACGAAGAGCTGATACTTTCCCCAATGCCCGGCGAACTGTATGTTTCCATGCTGGTAGGCGCAGGCATGACCGCCATCGGCGTTGTGAAATATCGACACGCTCGGCGCAACCCAGTCGCTCCACGTCCAACGAGTGCTAAAACAGTCGCCGCATTGTTGCTGATCGCGCTTTATCTGGCGCTTCCGCTACATCTCTACCTACGTGAACCGCTCCCCTACTGTGCTTTCAGCCCCAGCGGTCAGCAGTTAACGGTATGTCTGGGAGACAATGACGAGCGGATCATTGTGGAGTGATGG # Right flank : ATAAAGCTCTCCTAAAATCAGCAATAAAAAACTCATAGGTAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCTTGATACTGTTTAGGAAATGCGATGTACCACATTGATGACTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCTGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTGGAACAGGCACAGATGATTCTCGGCTATCATGCCCGCCTGTCGCCGAACGCCGTCGGGCTGGAATGTCTGGGGTTGATTGAAGTGCGGTTGATCAATCACACCAGCGAATATGTTGAGCGCTTTCACCAGATGCTGGGGGAAGTGGACGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGGCTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGCGT # Questionable array : NO Score: 3.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 152598-153602 **** Predicted by CRISPRDetect 2.4 *** >NZ_QESX01000001.1 Pectobacterium polaris strain SS28 SS1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 152598 29 100.0 32 ............................. CGACGTAGCGGAAAAAACCCGGTGTTCACATT 152659 29 100.0 32 ............................. TCCCCCACTTGTTGCCGCTTTGGATTGCAGCA 152720 29 100.0 32 ............................. CCCAGCGGGAAATCTATTGGCGCTCTGGACGT 152781 29 100.0 32 ............................. CATCGCTAGGTAGCCGCATCGGGCTGTCTGGG 152842 29 100.0 32 ............................. TACCTCGAACAGATTGGTGATGAGGTGATGCG 152903 29 100.0 32 ............................. GTCACAAGCTGGAAGACACATGGCCGGATCAG 152964 29 100.0 32 ............................. ATGGTTCCTGAATTTAATACCCCGATCTTCAG 153025 29 100.0 32 ............................. CTGTCTTGAGCAATAGCCATTATTTAGCCTCC 153086 29 100.0 32 ............................. TCACAGAGCTCATGGAAGTTGGGGCGAAATCA 153147 29 100.0 32 ............................. GCCGTCCAGTTGATCCGGTGGTACTGATGCTG 153208 29 100.0 32 ............................. TTCATCGTCGTAATACTCAATTGAGAAATTGT 153269 29 100.0 32 ............................. CTGTGCGGCGGTGCGGGTTCCACGCATGACAG 153330 29 100.0 32 ............................. ATATTATGCTTGAAGCCCTGGCTGAACCGATC 153391 29 100.0 32 ............................. CAGAATCACCGCTGATTCAATAACCACTACAA 153452 29 100.0 32 ............................. GCCAATCAGCAGGCATGGTCGGAGTTCGAGTT 153513 29 100.0 32 ............................. ATGCTCTGCAAAATGTTGGGCTGCTCTCGTGC 153574 29 93.1 0 ............T..............T. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACGACGCACAGCCGCCGGCGATCCCAGAACCGAAACCGTTTGGTGACAGCGGTCACCGAGGACAAGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTTCCACCGCGTTTGCGCGGCAGGCTGGCTGTGTGGCTATTGGAAGTCCGCGCAGGCGTGTATGTCGGTGATACGTCACAGCGGGTGAGAGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTTTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : GATGTGAAATGTAAATTACACATGTTTCCATATTGTCAACTCGTTCTGTTTATGGCATGGTGTTTCCAATTTGGAAATACTAGGGAAGGCATCAGAATGCATGTTATTTCGCGGGCACCTTTCGACACTGCAACCACTCAGTTTCCGAATCAGGCGGCAGCACTTGATGACCTATATCGGGTTATCAAACGCGAAATGTATGCAACGCCGGACGATATGAAAAAACGCTTCCCCAGTCTAGATAGGATGAAATATCGGGAAAAATGGTGGGTTATTGATATTGGTGGCGGGCATCTTCGAGTGATGTTTTTTGCTGATTTTGAGCGAGGGAAAATCTTCATCAAGCACATCACATCCCATGCAGAGTACGACAGGCTGACAGAGTATTACCGGAGGAATAAAGAATGATGTACGCAGACGCCATCAAGGCAGCTAACAACCTGACGAGTATCGTACCATTCCTCGGAGGCAGCACCTCTCGTAAGGATTATGAGGATGCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 155792-157040 **** Predicted by CRISPRDetect 2.4 *** >NZ_QESX01000001.1 Pectobacterium polaris strain SS28 SS1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 155792 29 100.0 32 ............................. TCGCCGACATGACCGAGGATGATGTTCAGCAA 155853 29 100.0 32 ............................. CAGAAATCAGCATTCCAACACTTGTTGCCAAG 155914 29 100.0 32 ............................. GGGATTACAGCCTGGCGACGCAGGCGGGCTAT 155975 29 100.0 32 ............................. CACAGACAGAAGCGGCAGTGTCGGCCAGTGCT 156036 29 100.0 32 ............................. CGGAAATCACCGAAACGCGACTGGTTATTGCT 156097 29 100.0 32 ............................. ATGTTCGTCGCAGAGTTGAACGACCAATTTCA 156158 29 100.0 32 ............................. CCTGAGCGTTGATGAGCTGATGGCGGATATCG 156219 29 100.0 32 ............................. GGGGTTTTGGATTTGGTGATGTGATTACTATT 156280 29 100.0 32 ............................. CCAGATCCGTCTGGTAAGATATTTCTGGTTGA 156341 29 100.0 32 ............................. AGCGTGGTCAGGCCATCAGTCAGGATATCCCA 156402 29 100.0 32 ............................. AGATTTCATATTAACGACGATGGTGTAATTTC 156463 29 100.0 32 ............................. CTCGTTGCGCTGGCATTGACTGAAAGTGATAA 156524 29 100.0 32 ............................. CAGTTGCCCGGTGTATCACCGAAGGTCACCAC 156585 29 100.0 32 ............................. CTAGCATGATTTATCAATTTATGGCGCGAGTC 156646 29 96.6 32 A............................ AGCGCATGAATCTGCCTGTTGTTGCATCTCAA 156707 29 100.0 32 ............................. CACTGGTCGAGTAATCCCTCGTAAAACCTACG 156768 29 100.0 32 ............................. CCATGACACTGCTTGTCAGCATGGCACAGCAA 156829 29 100.0 32 ............................. CGCGTAAAGGATGCCGAGGAAGAGAAAGAAAA 156890 29 93.1 32 .A.....T..................... GACGTGATGGCCGAGTCGATAAATATCGCGAA 156951 29 96.6 32 .................A........... CAGTTGATTTGCGCCAGCAGGCCATCAAGTAA 157012 29 89.7 0 ..A.........T..............T. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTCATTCTCTGCTAATTATTTACTGTGTTACTTCAAGACGACGGATATGCATTGATTGCTTCCAATTTATTTTAATATGCTTGTAATCATTAGATATAGTGGATGAAAAACCTTGGTATTTACAAGATATATTGAAATTCGGTTGAGAAAAAATATTTTTAACAGAGAAGTTCTTTACCTAGAAATAGAATCATAGTGGTATAACTCTTGCAAAAGTGTACAGCGTTTAATTCAGCGACTGAGCGTTTTCCTGCTGTCTGAAATCAAACTGGCAAATCAGGGAAACGTAGTGATGGTGTGGGCGGCGAATGTGGAATTCGGTTTTGGGCTCCAAACCTGAGGCGAAAACCGCCGAATGCCGGTAGATTTGGATGGTTTGCGGTTAGTCTCTTTTTCACCTATTTAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : GGGCTTATACCCCTTGTTGCATGTTGGTCTAAATATCCCCCGCACGAGTCAAATCCCGCTTCTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTGCACCCACCGTCACGGTGAGGCGCTATGCCAATGATTTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAACGTTCGACAGAGCATGCCGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTCATCAAGTAGGCAGCGGTGCTGTTCCTGCCGGTGAGACGACGCGGTATGATTTCACCCGCATTAGCCCAGCCGAGCTGTATGAAACGGTTGAAGGACTTGTCAGCAGTGGGCGGTTGGGACGTGAAGAAGGTTCCGCGCTGTTGGGTTTTGTCTCGTCGCCGAGAGCCGAAGGGGGAAGCATTCCGCCTTCCAATGTGTTCCAGCCGATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //