Array 1 163418-160765 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNV01000008.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712392, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163417 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 163356 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 163295 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 163234 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163173 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 163112 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 163051 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162990 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162929 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 162868 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 162807 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 162746 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 162685 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 162624 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 162563 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162502 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162441 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162380 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162319 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162258 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162197 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162136 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162075 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 162014 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161953 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161892 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161831 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161770 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161709 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161648 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161587 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161526 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161465 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161404 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161343 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161282 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161221 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 161160 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161099 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161038 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160977 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160916 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 160855 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160794 29 93.1 0 A...........T................ | A [160767] ========== ====== ====== ====== ============================= ================================ ================== 44 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCTGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 182153-179925 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNV01000008.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712392, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 182152 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 182091 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 182030 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181969 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181908 29 100.0 32 ............................. TTGATGAGCGCGGGCATATGCAGGTAGACGAA 181847 29 100.0 32 ............................. GATGTATTGCTGTATTGTCTCGCTCTGGCGGT 181786 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181725 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 181664 29 100.0 32 ............................. CTGTCGGGCCTTCGCGCAGCAGTGAGAACATA 181603 29 100.0 32 ............................. CCAGCATCAGGCAATCAACCATCACCAGAAAA 181542 29 100.0 32 ............................. ACGACATCGCGCAGGCTATCTGGACGGCGGCA 181481 29 100.0 32 ............................. AGGCCTGATTATTCACTGCCTGCCAGTGTTTT 181420 29 100.0 34 ............................. GGGTGTTTTGGAAAAGTTCGGGCCAAATCTCGGG 181357 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 181296 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 181235 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 181174 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 181113 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 181052 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180991 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180930 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 180869 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 180808 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 180747 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 180685 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 180624 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 180563 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 180502 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180441 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180379 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180318 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180257 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 180196 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 180135 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 180074 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 180013 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179952 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================== ================== 37 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //