Array 1 96489-97310 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDAS01000015.1 Escherichia coli strain 2009EL-2050 NODE_15_length_114307_cov_38.2639_ID_11881, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96489 29 96.6 32 ............................A GGAACTGGCGCTGCTGGAGCAAAACCCGGTAT 96550 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 96611 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 96672 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 96733 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 96794 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 96855 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 96916 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 96977 29 93.1 32 ....C....................C... CCGTCAAACAGTATCACCGCGTTACCGCCCGC 97038 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 97099 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 97160 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 97221 29 96.6 32 ....C........................ CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 97282 29 93.1 0 ..........T.................A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATATTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //