Array 1 198938-200918 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXGK01000003.1 Bifidobacterium samirii strain 2033B Contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 198938 29 100.0 32 ............................. ACCGCCACCGGCCGGCGTCTCGAACCGTTGCA 198999 29 100.0 32 ............................. GATTTCATGAGTCTCTACCCGACCAGCCGCAT 199060 29 100.0 32 ............................. TGTCCGGCATCTACGTGAACATGAGCGGCGAC 199121 29 100.0 32 ............................. TCAAGAACTGGGATGAAACGACCACCAGCTGG 199182 29 100.0 32 ............................. AACCGTTTTTTCAATGAATTTTGTGACACGCT 199243 29 96.6 32 .............C............... ACGTTGCAATCATTGGGCTTATCGGCGTGTCG 199304 29 100.0 32 ............................. TAAGGCTTAAGCGAGGGCTGACGCAAGAACAG 199365 29 100.0 32 ............................. CGAAGTGCTCGCCGTCACCATCGACGGCCGGT 199426 29 100.0 32 ............................. CGACGCCGCGTCCGCCTTTCAGCCCGTCGCCT 199487 29 100.0 32 ............................. GGCGTGCAGGTCGGTCGGCCTGTCCGCGCCGG 199548 29 100.0 32 ............................. GTGCTCGGCAGCGAGGACGAGAAACGCGCCGA 199609 29 100.0 32 ............................. TTGCGTTCCGGCGTCTCGCCCTCGCCCCATTG 199670 29 100.0 32 ............................. TTGCGTTCCGGCGTCTCGCCCTCGCCCCATTG 199731 29 100.0 32 ............................. AAATCTCCGTCTTCGTTGAGGAAGCCGGTGGC 199792 29 100.0 32 ............................. GGCTCGAACACCGAGCATTCCCCATGGTGGGA 199853 29 100.0 32 ............................. CGCACGCCACCACCACACGACGGCCACGCGAG 199914 29 100.0 32 ............................. GATTCGACGAGGACTCCCATACTTGCCTGCAT 199975 29 100.0 32 ............................. GAGCTTTTCGACCGCGACGCCTTCGCCTACAC 200036 29 100.0 32 ............................. ATGTTGCCGGACCGGAAAAGAGTTCCGCCCAG 200097 29 100.0 32 ............................. GCAGACGCCCGCCCGCCACGACCAGCCCGGTA 200158 29 100.0 32 ............................. AGCCGGCCGACCTCTATCCCGTCCTCCGTCTC 200219 29 100.0 32 ............................. AGCGGCGCGATGTGGGATGAGCTCACCGCCGC 200280 29 100.0 32 ............................. AAACCGAGTGCCTTAATTTCCAGCGGCCGCAA 200341 29 100.0 32 ............................. TGACGGTGCGAGCCAAAATAAATCCCTCAAAA 200402 29 100.0 32 ............................. GATTCCAACGGCAACCCCGTGGACACGACAAT 200463 29 96.6 32 ................T............ CTCTACGGTCGGCTGCGCGCATTGTCGAGCAG 200524 29 100.0 32 ............................. TGGACGACGATACCGTGATCGATATCATCGTT 200585 29 100.0 32 ............................. TTGCGTTCCGGCACCTCGCCCTCGCCCCACTG 200646 29 100.0 32 ............................. ACCTCTGCCTCGACGATGATATCGACCACGGT 200707 29 100.0 32 ............................. GAAAGTAGAATGGCAGCCGTCGGACCACGCGG 200768 29 100.0 32 ............................. GTCACGTTGGACACCAAGAACAAGCCATCCAC 200829 29 100.0 32 ............................. GCGTCGGTAATCGTGATGATTTCGTCGGTGCC 200890 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.8 32 GTGTTCCCTGCGCACGCGGGGATGATCCC # Left flank : TGGAGATCTCCCCGGGTGTATTCGTCGGCCATGTCTCCGCCCGCGTGCGGGAACGGCTGTGGGAGCGGATCACGGACATGGTGAAGGACGGGCGTGCCATCATGGTGCATTCCGCACGCAACGAACAGCATCTGGCGTTCAAGGTCCACCATGCCGACTGGACGCCAGTCGACTGCGACGGTCTGGAACTGATCAAACGGCCTCCGGGAACGGAACACGCTACTGGTGCTGGAAAATCCAAGACCGGGTGGAGCAACGCGAGCAAATATCACAAGGCCAGGCGTTTCGGACGGTAGGGGAGTGGCGGTGGTGTGAGATCGGTGGGCGCGGGTGCCGTGACGAGGTATGTCGGTGCGGCGTCATTCATGGTTCTCATGTGTCGCGATTCGGCTTCTCTCCCACTCCACATACGGGCTGAGGATTGGCGTGTCGGATCCAAATTAAAGAAAAAAACGAATTCTGCGCTATGCTGATTATTGGGATTAAAGGGATTTCTTACT # Right flank : CATGCTTTTGCCGGTGCCGCCCTCGCCGCCGACGCCGCGGCCGGGCCGGTTGGCGTTCCACTGGTCGATGGTCTCGGGTTTCCAGCCTCGAGTGCGGCCAATAATCGCATCCGGCTCGGGTAAGTTGAGGCTGAGGAGGGCGCCTTGGATGATGTCGAGGTGTTCTGCGACCTGCTTGACGCCGAGATGGTGTTCAGTCATCATGTCCTCCCTTTGGAACGAGTTTGATTGGAGCATTCCCGATCCGGTGCATGCGTTTCGTCAGATCAGTTCACCTTGGAACAATTCCGAGTGCGAGCCGATGCGTACCATGCGGATCACGGTGCGGTCCCGTCGTTTCCAATACAGGACCAGCACGTCGATGTCTCCGTCAAGATGGAACTCCCAGTGGCCGTTGTAGTTGCCGCCCGGGTTGTCCAGCACGTGCGGCACGTAGCCTTCGGGCAGCTCTCCGTATTCCTGCAGATAGTCGATGGCGTCGTCCAGATCGTCCATGAGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.50,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10345-299 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXGK01000029.1 Bifidobacterium samirii strain 2033B Contig_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10344 29 96.6 32 ............................A AGTTGCGACACGCCGACGAGCGGCATTGACAG 10283 29 96.6 32 ............................T GATGCGTTCACCCATATTCGGGCGTGAAAAAA 10222 29 100.0 32 ............................. ACTGCGCTTTCGACCTACCTCGGACTCCGCCG 10161 29 100.0 32 ............................. CGGAAACCACACCATCGACCGACCCCACGGCG 10100 29 100.0 32 ............................. TGTCCAAGACCGAGCTCGCCGGCCGCGTGGGC 10039 29 96.6 32 ............................T GCCATGATTGAAAGTTCATACAAGCGCTTGGG 9978 29 100.0 32 ............................. ACCAGTTCAAAGGCCGGCGGATACACGGGCGG 9917 29 100.0 32 ............................. ATCCTCGAGGAGGGACAGGCCACCGGCGACAT 9856 29 100.0 32 ............................. GCGCGCAGGGCCCCCTGAGGTCGGTCGTGCAG 9795 29 100.0 32 ............................. CAGACAGGGTGCCGACGGTCTCCTCCAGGCTC 9734 29 100.0 32 ............................. TGGATGAGTTCGGGGAAGAACGCCTCGGCCGC 9673 29 100.0 32 ............................. TCCAGCATGCGCCCGTCGGCCCTGACGCGTCC 9612 29 100.0 32 ............................. GCGGTGGTACCGCCCGATTACGTCACGTTACA 9551 29 100.0 32 ............................. GCATATCCGGTATTATATATTTTTAATGATTT 9490 29 100.0 32 ............................. CGAAACCATTATGCGTGCGTTTGAAAAAACAT 9429 29 100.0 32 ............................. CGTTCGTAATCGAAATGATTTCGTCGTCACCG 9368 29 100.0 32 ............................. CGCACATTTAAAATCTGTAGCGTGTTTGATAC 9307 29 100.0 32 ............................. GCAGACTGTAGATCAGTGATATTAGCGTTCGG 9246 29 100.0 32 ............................. CGTTGGGATAATCCGCTGAGGGCGTTTTTTGG 9185 29 100.0 32 ............................. GCCCAGCCCTTGGGGGCGAGGCCTTGCCTGCA 9124 29 100.0 32 ............................. ACATAGACCTTGCTCGTGAAGTCCTGCCGTCG 9063 29 100.0 32 ............................. AAGCGCGAAGCGTTGACTAGGTCCACGACGGA 9002 29 100.0 32 ............................. AAAACACAGACATTAGCCGGGCGCATGTCGGC 8941 29 100.0 32 ............................. AAAACACAGACATTAGCCGGGCGCATGTCGGC 8880 29 100.0 32 ............................. CCTCTCAGCGCGCGGACGTATGTGGATGATGA 8819 29 100.0 32 ............................. GTGATTCGATTCTGAAAATATAAGGTGTAAAA 8758 29 100.0 32 ............................. CTAGCGAAATCGCAAAAAGAATTATCCGCGAT 8697 29 100.0 32 ............................. ACCCGAAGAGCCTTTCGGCCGAGAGGCACGCG 8636 29 100.0 32 ............................. CCCTTGAGCTGGCGGCGATTGAAGAGGTGGCC 8575 29 100.0 32 ............................. TCGGTGAGCTTGGGCAGCAGCCGGATGGCCGC 8514 29 100.0 32 ............................. TCGAGTCCGCCCTGGTGTTCGATGCTGATGGT 8453 29 100.0 32 ............................. TAGTAGCCCGGGTACTGTGGCACGGCGGTGAG 8392 29 100.0 32 ............................. ACCACGCTCGACGAGGCCGGGCACGTCCGCTC 8331 29 100.0 32 ............................. GGAGCGGGGAACCCAAGCACAAGCGCGACATG 8270 29 100.0 32 ............................. GACATGGCCCAATGAGCGGGCCGGCACCCGCC 8209 29 100.0 32 ............................. GGAGCGGGGAACCCAAGCACAAGCGCGACATG 8148 29 100.0 32 ............................. GCGGGGGAATCCACGGCGGGACCGGCGGTCAG 8087 29 100.0 32 ............................. GTTCGGCGGCACGGTGCTGGAGGGCGTGGCCA 8026 29 100.0 32 ............................. CCGCTCCGACGGCGGTCCCGGATGATGCTGAT 7965 29 100.0 32 ............................. ACCAGGGCCGATGAACAGGCACAGGCGCAAAC 7904 29 100.0 32 ............................. GACGGACGCTCACTCTCCACGCTGCCGGCCAC 7843 29 100.0 32 ............................. GCCGAAGAAAAGGCCCAGAAAGAGCACTGGGC 7782 29 100.0 32 ............................. GACATCATCGGCAAACTGTCGGAGATGGCCGG 7721 29 100.0 32 ............................. CTGCGCCACTTGGAGCAGCCTGCCTTGGACCA 7660 29 100.0 32 ............................. GCGATGTTAGTTGGTGCCAGCTCAACAGTCGC 7599 29 100.0 32 ............................. GTCGGTGAAACCAAGCTCAGACTCACCGCGAG 7538 29 100.0 32 ............................. CTCTTGCGCTCCTCGCTCGGCAGCGGGGCCGG 7477 29 100.0 32 ............................. CGCTGCGACAGCTTGTCTCCCCTGAACGTGAC 7416 29 100.0 32 ............................. CCGTCAACCGCGAGCTCGGCCTCCTCCTCGGT 7355 29 100.0 32 ............................. GCGTCCCGCAGGTCGTGATCGTAGGACGCGGC 7294 29 100.0 32 ............................. GCGGCGGCGCAGGTCGGACAGGAGAAGCACGC 7233 29 100.0 32 ............................. TCCCTCATCCGTGTCCAAAGTCCACACTTCGC 7172 29 96.6 32 ............................T CAAGGTCTACATCGACGGCGTGGACAGCACGG 7111 29 100.0 32 ............................. CCTTGGAATTACTGGCTTTTAGACTAATCGCG 7050 29 100.0 32 ............................. TAATCGTAGCGGTGTGAATGTTCCTATTGATA 6989 29 100.0 32 ............................. AAATGCTAGGAAATCGCGTGCTAACAAAAACG 6928 29 100.0 32 ............................. TGCCTGAATTTGGTTATTCGTGGCATGATAAT 6867 29 100.0 32 ............................. CGGCGCGTGAGGCAATGGTATTTACGTGCCGC 6806 29 96.6 32 ............................T TCGTCGTCGGTTTCGTCGTCGTTATCATCGTC 6745 29 100.0 32 ............................. AAGACGACGATTAATGACGGTAAGACTATTAA 6684 29 100.0 32 ............................. GCCGACGCCTGCCGCCACGGAGCCGCCGACCC 6623 29 100.0 32 ............................. CTCGCCGTCATGCGATCGAGCACATCGACTTT 6562 29 100.0 32 ............................. ATGAGGGCCGATCGCAAGAAGGCGAAAGCGGA 6501 29 100.0 32 ............................. GTCGCGCGGATCTCGGCGGCGTTGGGCCAGCC 6440 29 100.0 32 ............................. ACATGCCGTCTCCCCCGCTGATGAGTTCAGTC 6379 29 100.0 32 ............................. GACGTGTAGAGGGCGAGCAGGTCGGCGCCGGT 6318 29 96.6 32 ...........T................. ACGATCGTTGACGACATACCGGTTGTAGTCGT 6257 29 100.0 32 ............................. ATTCGGCAGATTAACGCGCGTAATTCTGCCTC 6196 29 100.0 32 ............................. TTCCTCACCCGTTTCCGTGCGATAGGTAATCG 6135 29 96.6 32 ........T.................... ATTCTTTTTTCAGCGTATTAAGATACCGCCTA 6074 29 100.0 32 ............................. CGGGATCCGTGGCGCACGACTACGTCCCGCCG 6013 29 100.0 32 ............................. GCTTCGAGGACTACTGCACGGAACGGTCCGAA 5952 29 100.0 32 ............................. AGGAATGCCTGCTGCAAGTCATCCTCGCTTTC 5891 29 100.0 32 ............................. AACCGCAGGTCGACAAAATCGTTGAAAAATCA 5830 29 100.0 32 ............................. CCGAAGCTGTTAGGCCAGCTGACGGACGAGAC 5769 29 100.0 32 ............................. CTCACCCGCATCGGCAACATCGTCACCGTAAC 5708 29 100.0 32 ............................. ACCCGTAAACGGATCCTTGAGCGTGACCATCA 5647 29 96.6 33 ............................A GGCGGCGCGCACCGAGTCAAGACTCGCCGCCGA 5585 29 100.0 32 ............................. GACCGCCACCGTCGACGATCCGGCACGACTGT 5524 29 100.0 32 ............................. ACCTCGACATGATCATGCGCCATCATCCCGCA G [5502] 5462 29 100.0 32 ............................. TCCAGCACGCGCCCGTCGGCCCTGACTCGTCC 5401 29 100.0 32 ............................. GGACCGCCGGATTCCCACATGGTCAGGGCCTC 5340 29 100.0 32 ............................. TCGCCGGCGCGGGGCCTCGCCTCGATCCGGAC 5279 29 100.0 32 ............................. CAGACCCTGGAGATCACCGACCTCGGCACGGG G,C [5256,5270] 5216 29 100.0 32 ............................. TGTCCGACAATCGCATACGGAACATTGCTTGT 5155 29 100.0 32 ............................. ACATACGGCGCGAAACGACTCGTAATCGACGA 5094 29 100.0 32 ............................. ATATCCTAGAAGCCCCACGCCTTTCGCTAGGG 5033 29 100.0 32 ............................. GACTCGCCCACAAGTTCGCATACTTCGCCGTC 4972 29 100.0 32 ............................. CCGACGCCCTGGCTGACCTTGACGACGGCGAA 4911 29 100.0 32 ............................. TCTTGTGATGCGCACATATCGGGCGACACCAT 4850 29 100.0 32 ............................. GGGCGCGACATCAGCCGCATGGTCAGCAGCTA 4789 29 100.0 32 ............................. GCGCGGGCCTGTCCCATCGCGTTGCGCATCGT 4728 29 100.0 32 ............................. TCGTCGGTGTGGTCTACGCCGTCGACGAACAC 4667 29 100.0 32 ............................. GAGGTGACCATTTTGGCTCAGGGCTACGTGAA 4606 29 100.0 32 ............................. AACCCCGACGGTGGGTGACGTTGACACCCCTT 4545 29 100.0 32 ............................. GGTCCGGGGCGCGTGGAGCGCATGCTGGCGGA G [4523] 4483 29 100.0 32 ............................. ATCGGGCACGCCGCGCGCTGTCTGGACATGTC 4422 29 100.0 32 ............................. TAGTTTCCTCCGGCCAGCACCTCCGAACAGTG 4361 29 100.0 33 ............................. GTCGACCTCCTCGAAGTCGCCGTCACCGGACTC 4299 29 100.0 32 ............................. CTGATGGCGGGTCCGAAGGCCGTGAAGAAGCG 4238 29 96.6 32 ............................T GCGTGACCTGCGCGATGTAGTAGGACGGTGCG 4177 29 100.0 32 ............................. GCGCAGCGGACCAAGGACATCAAGAACGCGGT 4116 29 100.0 32 ............................. ATCATGTCCGACCTTTTGCCGGACGGGTGGTC 4055 29 100.0 32 ............................. TCCGCGCTCGTGGACGCCTCGGACACGTTCAA 3994 29 96.6 32 ........T.................... CGTGCGACGACTCAGCTCGGTCTTCGGCTCGA 3933 29 100.0 32 ............................. AGTTCTATTCCACCGTCGATAGGTGGCATGAT 3872 29 100.0 32 ............................. TAGATGAATTGCCACTTGCGTTTCAACCAATC 3811 29 100.0 32 ............................. GCGCCTACGATCCGGCAAGCGGCCTCATCCTC 3750 29 96.6 32 ........T.................... CTCACACTATTGGCCCTGAGAACGCGCTCGGG 3689 29 93.1 32 ........T...................T GCTGTTGCATCAGCAGAGTGCCGTCGGGCGTC G [3666] 3627 29 100.0 32 ............................. GAGACCGGGTTGAAGGACAACGAACTCCAGAA 3566 29 96.6 32 ............................A AGCCCGTCAAGGCGACGCCGAAGCCCGTGGCC 3505 29 100.0 32 ............................. GTGCACATCGAATGGCTGGACGATAAGGCCCC 3444 29 100.0 32 ............................. ATAAAACGCTCTCAGTGTCGGTTTTTGTTGAG 3383 29 100.0 32 ............................. CACAGATTATCCGACTCACCGACGCGGCCGAA 3322 29 96.6 32 ......................G...... GCCTCGCCCCGCTCGACACCACCGACCCGACG GGG [3296] 3258 29 100.0 32 ............................. GTCTGGAAGTCGATCTTGCCCTTGGAGACCAT 3197 29 100.0 32 ............................. TCGAACAGGTAGCCCGCGCCGGGGTGGTGCTC 3136 29 100.0 32 ............................. GCGCAGGAGGCCCGGCTGGTCGCGCGCGGCAG 3075 29 100.0 32 ............................. ACGACCGGCTGTGTCGATGCTGACGTACTGGG 3014 29 96.6 32 ..........A.................. GATGCATGTTTACCCGTCCGGAGGCACGTCCG 2953 29 100.0 32 ............................. ATCGTGCAGACGAACGCGCGGCTGCTGGCCCT 2892 29 100.0 32 ............................. GCGCGGGTCGAGGAGCTGCTGCACCGGATCGA 2831 29 100.0 32 ............................. TGCGCGCGCGAGCTGCGCGTGCCATGGAACCA 2770 29 100.0 32 ............................. GACTGCAGTGAGGTGACGATCGGATTGTTGCT 2709 29 96.6 32 ............................T GCCGCGCGTTTCTTTGGCGTGTCGGTTGAGAC 2648 29 100.0 32 ............................. ACGATGGTCTCGGGTGTGAGGCGTTTGTCGAT 2587 29 100.0 32 ............................. GGTTGCGGATGGAGCTTCGACGTCTCCACCGA 2526 29 100.0 32 ............................. GCGATCCGCGCCGGCTGGGCGGCCAAGGCCAA 2465 29 100.0 32 ............................. CCGGCCGACTGGCTCTTCCCCGGCGACGTCGA 2404 29 100.0 32 ............................. TCGTCAGGGAACCGGCTCCTCGGCCGACTCCC 2343 29 100.0 32 ............................. GTTGCAATTGCTGAGATCTGTGATGATCCAGA 2282 29 100.0 32 ............................. TAGTCGGGGACCGTCACCTTGAAACGGTCGTA 2221 29 96.6 32 ............................T GGACCGACGAGAGCGCGCCGGCTGGCACCATC 2160 29 100.0 32 ............................. GCCGTGCTCGTGCTCGACTGGGAGTCTCAGGG 2099 29 100.0 32 ............................. CAGCTCATCATCGACCGGACCAACGGCACGGA 2038 29 100.0 32 ............................. GAGTCGATGACGAAGTCGGCGTCATCATCGTC 1977 28 96.6 32 ........-.................... CGAAGAAACGCGCCGGCAACTGACGTGCCGCC 1917 29 100.0 32 ............................. CAATTATAGATTTTTTCGCGTGTCGATATAGC 1856 29 100.0 32 ............................. GTCATACCGAAGCTCACGGATGCCTGCGTGCC 1795 29 100.0 32 ............................. CGTGCGGCGATGCTGCCGACCCAATGCAGTCC G [1773] 1733 29 100.0 32 ............................. TTTAGACGCGCGCCGTTTGGTGCGTAATTGTG 1672 29 100.0 32 ............................. TGTTGTAGTGATTCTTTACAACACTTAAGCGT 1611 29 100.0 32 ............................. TGTTGTAGTGATTCTTTACAACACTTAAGCGT 1550 29 100.0 32 ............................. GCGTGCGACATCCACGGCTCGTCATCCGGGAC 1489 29 100.0 32 ............................. AGGATGGTGTGGACCTGCGGTGTGGGTGCGCC 1428 29 96.6 32 ............................T CAGTCACCTCGATGATGCGCCGGAACGGGCAG 1367 29 100.0 32 ............................. TCGGCGGCGCTGTCCATGATATCGACGTCGCG G [1345] 1305 29 100.0 32 ............................. GTAGGTGAATATGGTCGCTCAGGTAGTTACCC 1244 29 100.0 32 ............................. CTCGCCCAGCCTATCCAGGACGACGTCACCAT 1183 29 100.0 32 ............................. GATTCGACGGTGCCTACCGGCTTCCCGACAAC G [1161] 1121 29 100.0 32 ............................. CGCGAGGAGGACATGCTCGAGGACTGGGCCAC 1060 29 100.0 32 ............................. GGTCCGGGGCGCGTGGATCGCGAGCTGCTGTA 999 29 100.0 32 ............................. GAGGTCGATCGTGAGCGTCCAGACGAGTCGAG 938 29 96.6 32 .......................T..... ACTTCGGCATGCTCGTCGTCGGCGGCGACCGA 877 29 100.0 32 ............................. CAGCGCGACCTCGCCGGCATCATCCTTAGCCA 816 29 93.1 32 ..............T......A....... TTCGCCATCACCCTCGACGACTCGAACCACGC 755 29 100.0 32 ............................. GCATGGTCCGTCAGCCGTTCGGACAGATCGGC 694 29 100.0 32 ............................. ACCCGCAAATGGGCCAGCAAGCCCGTCGCGAA G [672] 632 29 100.0 32 ............................. GAACTTCGCGTCGAAACGGATGATGTTATAGC 571 29 100.0 32 ............................. ACCAGAGCCGAAGGCGTGTACGACGTCTATCA 510 29 96.6 32 ............................T GCGGGACTTGCTGCCCTGATACGGGATCCCAT 449 29 100.0 32 ............................. TACTCCACGGACATGCCGGTCTCGGGGAGGGC G [427] 387 29 93.1 32 ............T...T............ AGCGGCGTCTGGGAGGCCACCCGCACACCGCA 326 28 86.2 0 ............T.......A.-....A. | ========== ====== ====== ====== ============================= ================================= ================== 165 29 99.4 32 ATCTTCCCCGCGCAAGCGGGGGTGAACCG # Left flank : GATGGGAATGAACGTCGATAGGAAGGCAGTCTGATGATCGTCGTAGTCCTGACGGTATCTCCTCCGAAACTGCGAGGCCATCTGACGAGATGGTTGTTCGAGATATCCCCGGGAGTTTACGTGGGGAAGGTCTCGGCACGAGTACGGGAATTGCTGTGGGAGCAGATCCTGGACAATCTCGGCAGCGGACGAGCCGTCATGGTGTATCCCTCGGACAATGAGCAGGGAATGCAGTTCAGAGTACACGGACAGGAATGGCAGCCTGTCGATTACGATGGATTGCAGCTGATCATGCGACCGAACACCAATCAGAAACAACGGAGCAACGAAAGGCGTAAGACCGGATGGAGCAAGGCCTCCCGCTATCGAAAATACGGGCGTTGAACCTTCCGAAGGATTCGACGGTGCCGGCTATGCGATCTGAGGAAGCGCGCATATCCACTGTCCGAATCCAATTTTTCAGCGCGCTGGACCGGGACTTTTCCGCATAAGATGAGACT # Right flank : GGTTGTCGGCCGGGTACACTAACCATCCAGGACCGGCGGTCCGGCTCCAAGACTGGCCATGACCGTCACGCGACACAAATCGGACGGATCTTCCTCACGTTTGGATCTTTCGGGACCCTCATCGTCGTCATGATCTTCCCTACGTAAGCAGGAAGCTCTCCAACGAGATTAATGGCTCTTCGCATTTTGGTGTGTAAGGGCCGTGCGGTTTGATTCGGTGTGTGATTGAAAAAATGAATGAAACCGCGCGGCTTGGTATTGAGTCTAGCGCGTTCGACGGCCGGGTCCTGCTCGGCCTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTTCCCCGCGCAAGCGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [25-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //