Array 1 109466-107850 **** Predicted by CRISPRDetect 2.4 *** >NZ_NABN01000065.1 Salmonella enterica subsp. enterica serovar Newport strain R8_8684_R1 NODE_1_length_433156_cov_0.865838_ID_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109465 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 109404 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 109343 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 109282 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 109221 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 109160 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 109099 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 109038 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 108977 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 108916 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 108855 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 108794 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 108733 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 108672 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 108611 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 108550 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 108489 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 108428 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 108367 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 108306 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 108245 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 108184 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 108123 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 108062 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 108001 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 107940 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 107879 29 100.0 0 ............................. | A [107852] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 127321-126135 **** Predicted by CRISPRDetect 2.4 *** >NZ_NABN01000065.1 Salmonella enterica subsp. enterica serovar Newport strain R8_8684_R1 NODE_1_length_433156_cov_0.865838_ID_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 127320 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 127259 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 127198 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 127137 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 127076 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 127015 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 126954 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 126893 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 126832 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 126771 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 126710 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 126649 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 126588 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 126527 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 126466 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 126405 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 126344 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 126283 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 126222 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 126162 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //