Array 1 64688-63630 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJOEL010000008.1 Escherichia coli strain ARS-CC11307 NODE_8_length_135391_cov_25.761266, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 64687 29 100.0 32 ............................. GCCACGATCGGCGATCTGGTTTACGCGTTGCT 64626 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 64565 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 64504 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 64443 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 64382 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 64321 29 100.0 25 ............................. AGGCGAGGGAGATCAGGCTATTACA Deletion [64268] 64267 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 64206 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 64145 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 64084 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 64023 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 63962 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 63902 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 63841 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 63780 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 63719 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 63658 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 91575-90387 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJOEL010000008.1 Escherichia coli strain ARS-CC11307 NODE_8_length_135391_cov_25.761266, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 91574 29 100.0 32 ............................. ACGGTCGAATTAACCTGTAATTTATATCTGGT 91513 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 91452 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 91391 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 91330 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 91269 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 91208 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 91147 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 91086 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 91025 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 90964 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 90903 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 90842 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 90781 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 90720 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 90659 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 90598 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 90537 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 90476 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 90415 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //