Array 1 45029-46532 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMVS010000041.1 Bacteroides thetaiotaomicron strain D40t1_170626_C3 NODE_41_length_51626_cov_14.2562, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 45029 45 87.2 30 ...A.-...AA....-T.............................. CTTGCCGAAGTCGGAGATACCGTCCAAGCA C [45038] 45105 47 97.9 30 .........................G..................... TATAAAATTCAGCGTGCCAAACAGCACGAT 45182 47 100.0 30 ............................................... ATGACCGATGCACTGGAGAAGGTTTGCAGC 45259 47 100.0 30 ............................................... ACATTGATGAAGTTCATATAATGTAGTATC 45336 47 100.0 29 ............................................... ATATAACTTCAAAAATCTAATTTACTTAC 45412 47 100.0 30 ............................................... AAATCATATAAATATAATAAAATATATTAA 45489 47 100.0 29 ............................................... CTCATTCTAACTACTCTTATTCATAAATA 45565 47 100.0 30 ............................................... ATAGCTGCAAATGATACAACCAAAAACCTA 45642 47 100.0 29 ............................................... GCATGAAAACGGAGGCTTATTTTAGTCTA 45718 47 100.0 29 ............................................... TCCTTTGTATACACTTCTGATGCTTTAGC 45794 47 100.0 30 ............................................... TCAAGGAGTACCTAAAGTATGATATCCTAT 45871 47 100.0 30 ............................................... GCTGACGCCGAACGTGCCCCACTTTATCGT 45948 47 100.0 30 ............................................... GCTGACGCCGAACGTGCCCCACTTTATCGT 46025 47 100.0 29 ............................................... CAACTTTGGGCGGAAGCCGTGGAACTGTA 46101 47 100.0 30 ............................................... AAGAAATTCGTTATCACGAAAGGACGTTTC 46178 47 100.0 30 ............................................... TTTCCATTTTTGAAGAGCTTCGGCTTGCCG 46255 47 100.0 30 ............................................... TGAAGAGAGGAGGAGGAGGATTAATAGAAA 46332 47 100.0 30 ............................................... TACGGACATTCGTATTCCTTAACTTCATGC 46409 47 100.0 30 ............................................... GGGGGTCGAAGTAGAACCGGACGGCATACA 46486 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 20 47 99.3 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : GTTCACAAGTTACATAGGTGGGGATTCCATAGTTGGCGATCTCCTGCATAGCAGCCGCACGTTCTTGAGGTACCAGAGTATTCCGCATTATATCCGGATAAAAACGGTTCGTCTCAATGGTCGTACAAAGAACGGATTTCTTCATAACCGGATGCTCCAGATATTTCAGAAAACGGGCGGGATTCTTTGACTGGAAGAGATACTTGTTATCAAAACCGTCACAATAGTCCAGTATCTGCTCAATCCATTCTGACGGGACATTAGCCGCCCATTCATCCGTACTGCTGCCTACAAAGATAAAGTTGCCTTCACCCAGATTCACTTTCAGTTCCTTCAGCTCCAGACGCAAGGGAGGCAGGAGAAGTTTACGTCTCATAAAACAATATGAACAAGAGTGTTCACATTCGCCTTTCATCGGGTTATATGTATGTGAAACGAAGGCATACATGTTCCCGGTACTTTTATTCAGTGCCATATATCATTATGCTTTTCACATCCAT # Right flank : CATATTTTATATAACAAAATGATTTCCAACAAGTTAAAAAGAAAATTAGAAAAGAAAAAAAGTCTGTTTCCAGCACAAAATCTCGCATTAATGCGAGATTTTGTTTTTTAAAATAACTCTAATTGTTGTCCAGGCGTATTAACATTCTGCATTTTCTTTCCATAAAAAAGTTCTATATTACCAAACTGTTTATCGGTAATACACATGATTCCGACATGTCCAAACTCCGGGAGGAAAGATTTAACTCTTTTTATATGTACTGTAGCATTTTCACTACTAGCACAGTGACGCACATAAATGGAAAATTGAAACATAGTAAAACCATCCTTTTGCAGATTCTTTCTAAAGTCCGCATAAGCCTTCTTTTCTTTCTTCGTCTCAGTCGGCAAATCAAAAAAAACAAGTACCCACATAATACGATATTCACTAAAGCGATCCATTATCGTTCAGGATAAGCTATTCGACGAATTTCTCCATTGAAACATTTGTAAAGTGAGGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 3179-1045 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMVS010000007.1 Bacteroides thetaiotaomicron strain D40t1_170626_C3 NODE_7_length_195698_cov_15.1296, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 3178 32 100.0 34 ................................ TCAACGATTTTTTAGGTTATAATCCTCGTTATTG 3112 32 100.0 33 ................................ TGGCCTTGGAGGTTGGAAACCTCGGCGTCAGAA 3047 32 100.0 33 ................................ GTATATATGACAAGGATAGAGAGTAATTGCCGA 2982 32 100.0 34 ................................ ATAAGCTGTTTAGTAACTTCGGTTTTACACTGCT 2916 32 100.0 33 ................................ TTCCCTAGGTATCATACTATCAGAGATTTACAG 2851 32 100.0 33 ................................ TTTCCATTTTTGCAAAGCCTCAGCCTGTCGAAG 2786 32 100.0 34 ................................ GAACTTACCAAGAAAGGCTGTTTGATCCTCGCCT 2720 32 100.0 34 ................................ ATCAGAGGAATACTGCCATTGAAGAGCGCCGATC 2654 32 100.0 35 ................................ TAGCAACCATAGACTGACGAGCAGAAACAGGAGTA 2587 32 100.0 35 ................................ TTTATTAGCTTTGTATGTCTAAAAAAAAACTGTTA 2520 32 100.0 33 ................................ ATCAGCATAATCACGAGTTCGATAACCTCTAAG 2455 32 100.0 35 ................................ GACTACCGGACGGGAGCTGTATCATGGAACGTAAC 2388 32 100.0 34 ................................ ATGCAGGATACCATACTCGACGAGTTCCAACGGG 2322 32 100.0 33 ................................ CACCAACGATTATTAGAAGAACCAATATTCGAA 2257 32 100.0 33 ................................ CATAACATTGCGCGACCATAGCATATTCTCCAA 2192 32 100.0 33 ................................ TTTATAATCCTTGTTACCGGACTGAGTAATTTC 2127 32 100.0 34 ................................ TCGAAGTGTTTGGGTGATCTCCTCCGAGTTAAAG 2061 32 100.0 34 ................................ ATTCTGAGAATTAGCAGACTTAGTACCCAAAATA 1995 32 100.0 35 ................................ CAAAGAAGATCGCAAGGTACTGCATAGAAATCAAA 1928 32 100.0 33 ................................ AGATCTATGCTGCTCAGTATTATGATCTTATGG 1863 32 100.0 33 ................................ GACCTAGATCCTTCCATTCCAAGGGATATGCGC 1798 32 100.0 35 ................................ TTCCTTTGGTATCATGATGTTAAAGAATAACAGAT 1731 32 100.0 33 ................................ TCAATTCATATCGCGGTCCGTTTGAATGCCGGA 1666 32 100.0 35 ................................ GGCCAGTTCGGGATTGAGAGTTTCCATCATCCGGT 1599 32 100.0 34 ................................ CTTACGTGCCTTGACGGGCATCTGGTACTTCTCA 1533 32 100.0 33 ................................ TAACATCATGGGGCAAGAATCAGCGGCTGGAAA 1468 32 100.0 34 ................................ AAAACAGCCCGGTCGGGGTCGTCGTTGGTCTTGC 1402 32 100.0 33 ................................ CGTCACTATTATATAGTGCTGCCGAAAAAACAG 1337 32 100.0 33 ................................ ATCAATAACGATTTCTTTTACCATAAAATATTA 1272 32 100.0 33 ................................ TTCAAGATGCTCATGACGGCAGATACCAATACC 1207 32 100.0 33 ................................ AGCGGAGCGAAACCGAGGTAATCACCTCCGCGC 1142 32 100.0 34 ................................ GTCAACATGAAGTTCCCGAAGGATTGGGATAACT 1076 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 33 32 100.0 34 GTCACACCTCATGTAGGTGTGTGGATTGAAAC # Left flank : GATAATTATCCAGTGTTCCTAATAAAATGATTTGTAATTATGTACATTCTTATAACTTATGATGTTGATACTACGAGCAAAGAAGGAGCACGTCGTTTGAGGTGTGTGGCTAAAACCTGTATGGATTATGGACAAAGGGTGCAGAATTCTGTCTTTGAGTGTAAGGTGACAGAAGCACAATATTGTCTCTTGAAAGAACGAATCAAAAGTCTTATTGATATGTCTCTTGATAGTATTAGATTTTATGTTCTCAGTAAAAATGAAAATAATAGGGTGGAAGTGATAGGTGTTGAGACTGCTTATAAAATAAATGATGCTCTTATTATATAATGTGTGCGAATATGTAGTGTTACAAAAAAAACAGTAATTTCGCAAGTGTTAAAAATCAGTAGATTAATTTATTTATAGAGCAGTTTTGGGTTGTGAAATCGAAAAAGTAGTAACGATTCGCATAATAATTGATTAAACTTGCTGGCTGATAATATGTTATCCAGCATAGG # Right flank : TTTACCATGATTCCATATCTGCTATTTCTGTTATAATGCTAGTTGACTATTGGGTGGGTAAGATTCCTAATTATTCTTTTACGCTTCTTATGGCAGAGGGAATATACAGTACTTATTCGCATATTTCTTTCATCTCCAATTTTAAGCGGATTATTTGATTTTTGTTATTATTTATAACTAGCTGTTTTTTGTTTGCTATAAAAGTAATTAAAATGATTCAGATTATCAAAGAAGATGTTTTTCAGTATGTATAGTTAAAAGAGTAGTTCTTATAATTTCTCTTCTCTTTATAATTTTCTCCCTCTCTCACCCCCTCAAACTCTTATAGATGAGAATAAATTGAAGTACAGAGATTGCATCAGTACTAAATGGTGCACATAAGCTTCATATAAGATTAAACAATTTCCGGGTTGACCCCAATACCTAGAAGATCATTGGGAGATTCAATTCGAAGGATAGCAGCGGTATCGGTAATTATCACAGCTACAGTCTGGGTAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCTCATGTAGGTGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.50,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA //