Array 1 108788-107233 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXGK01000005.1 Salmonella enterica subsp. enterica serovar Kentucky strain N29359 NODE_5_length_203868_cov_2.85591, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 108787 29 100.0 32 ............................. CGTGCAGGGGGTTAAATAAAGAACACGCTGAC 108726 29 100.0 32 ............................. ATGAGCTTATCCGCGTGATCGGATTCATCAGC 108665 29 100.0 32 ............................. CATCTGGCCTGTAGTTCGGGCCGTGTAAGATG 108604 29 100.0 32 ............................. CGATCGGTAATTCTATGGCCGTGCCGGTGATG 108543 29 100.0 32 ............................. GGCGCGTTTTGTCGTCTTTTGCCGCCATTGCA 108482 29 100.0 32 ............................. GCGATCCTGGGGAAAGAATAGCCCCAGGTGCT 108421 29 100.0 32 ............................. GGATCGGCATGGTTATTCATTTTCACGGCTTG 108360 29 100.0 32 ............................. CACTGCTAACACCGCTATTGCTGTGATAAATA 108299 29 100.0 32 ............................. ATGCCCGGGAGGAATACTACTGCGAGCCGAAG 108238 29 100.0 32 ............................. ACCAGTTTAGTCGCGGGTGCAGCAACTCATTT 108177 29 100.0 32 ............................. ACTGCGTGACGCCGCCATCAGAAATGTTAATA 108116 29 100.0 32 ............................. GCCATTGAAATCATTAACAGCGATAAAATTTG 108055 29 100.0 32 ............................. GCGGGTAAAAATGCAGACTGATATCAAACGCA 107994 29 100.0 32 ............................. CGGATCATATAGGTGAGAATTTCTTCTTTTTT 107933 29 96.6 32 ............................T CAATCCTCGCCCCATTCATCGCAGTACGCATC 107872 29 100.0 32 ............................. AGAAAATCGACAACATGACGGACGCCGACTAC 107811 29 100.0 32 ............................. CCCCGGAAGTGGCCGGGGAAACAAGGCAAGTC 107750 29 100.0 32 ............................. TACCAGGATACCCTGAAACGCTACCGTGTCCC 107689 29 100.0 32 ............................. CAAACATGACAGTAAAACGCCGGATTGATGTT 107628 29 100.0 32 ............................. TATGGAAATCAAGGCGCTGGCAGACGGGGAGT 107567 29 100.0 32 ............................. GACCAGATTAAAAAAACGGGCTGGACATGGGG 107506 29 100.0 32 ............................. TCTGGCAGTTGCGACAATAACTATGTGTATTA 107445 29 100.0 32 ............................. CTGGCATAGTCTTTTGCAATAGCGATAGCAGT 107384 29 100.0 32 ............................. CAGCTGCGGTCCGGCGTTATCGTCAGACCAGC 107323 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 107262 29 96.6 0 ............T................ | A [107235] ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGTGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 127290-125675 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXGK01000005.1 Salmonella enterica subsp. enterica serovar Kentucky strain N29359 NODE_5_length_203868_cov_2.85591, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 127289 29 100.0 32 ............................. ATGATTCTTTAGCCATTAATCACTGAGAAGGT 127228 29 100.0 32 ............................. ATGTGTCCGCAATTGAGCGTTTCTCGGCTGAT 127167 29 96.6 32 ............................T ACATCATTCAGCCCCTTGCACAACGCAATGGC 127106 29 96.6 32 ............................A ACCATTTAACTCACTGGATTTCGTGTACAGCC 127045 29 100.0 32 ............................. ATAACCAATTTGTTGGATATCGTAAGGATGAG 126984 29 100.0 32 ............................. TGCAGGGTTTGGGGGTACGATGGTGCAGAGGC 126923 29 100.0 32 ............................. AAAACCAAAAGGATTAACTTGCGTTTAATTCA 126862 29 100.0 32 ............................. TGTGGCGTTACGTTCGTCATTTGTAGTCACTG 126801 29 100.0 32 ............................. CATCGTGACGTTTGAATTTGTTAATGACAAAA 126740 29 100.0 32 ............................. TGACGGCAGTCAGGGCTAAACCAGGCCAGACC 126679 29 100.0 32 ............................. ATCGCTATATTTAGCCCGCAGCTCACTAATAA 126618 29 100.0 32 ............................. GCCTGGCTGGACAGCGAACTAAACACAGAAGA 126557 29 100.0 32 ............................. AATGGAAAATCTGCAATAGCGGCGGCCGTTGG 126496 29 100.0 32 ............................. CGCTGGCTAGGAAAATCCGTATTGCTCACCGG 126435 29 100.0 32 ............................. CGCCTGTCTATGAATGGCAAGGAAACGCAGCG 126374 29 100.0 32 ............................. TGTTTGAGGTCGATCAGGCCCAGCTTCAGATC 126313 29 100.0 32 ............................. CCACGGCAATGGCACCGGCCACTAACACCCCA 126252 29 100.0 32 ............................. ATCTGCAACCAGGCGGCACGCGCTTAATTTTC 126191 29 100.0 32 ............................. CGGCTTTTTTTGTGCCCGCGATTTGTCGTGGG 126130 29 100.0 32 ............................. GGTAAGCAAAATGGGCTTGTGACCTGGAATGA 126069 29 100.0 33 ............................. ACGCTTTAATCGATTTCTGAACGCGGCGCAGGC 126007 29 100.0 32 ............................. ACGCGAAACCTGAACCATTCAGATTGGACAAA 125946 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 125885 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 125824 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 125763 29 96.6 32 .......................T..... GTCACGAGGTCTGACGCGGATGTGATGAGTTA 125702 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATAAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGCTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //