Array 1 2940512-2938651 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCJL01000012.1 Salmonella enterica subsp. enterica serovar Derby strain 2015LSAL00314 2015LSAL00314_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2940511 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 2940450 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 2940388 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 2940327 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 2940266 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 2940205 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 2940144 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 2940083 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 2940022 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 2939961 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 2939900 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 2939839 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 2939778 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 2939717 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 2939656 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 2939595 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 2939534 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 2939473 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 2939412 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 2939351 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 2939290 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 2939229 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 2939168 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 2939107 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 2939046 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 2938985 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 2938924 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 2938863 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 2938802 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 2938741 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 2938680 29 93.1 0 A...........T................ | A [2938653] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2957973-2957152 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCJL01000012.1 Salmonella enterica subsp. enterica serovar Derby strain 2015LSAL00314 2015LSAL00314_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2957972 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 2957911 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 2957850 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 2957789 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 2957728 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 2957667 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 2957606 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 2957545 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 2957484 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 2957423 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 2957362 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 2957301 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 2957240 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 2957179 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //