Array 1 330871-333594 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKGT01000002.1 Alloscardovia omnicolens strain UMB0006 .21837_8_85.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 330871 36 100.0 28 .................................... AGAAATCCTAAATCAACAAGATGAGCGT 330935 36 100.0 28 .................................... TCAATATACTCATCATTACGGCTTATCC 330999 36 100.0 28 .................................... GATGGAAGGAAGTTACGTTGCTAAAAAG 331063 36 100.0 28 .................................... AGCGTTATCGGGTACGTGAGTGTGGGTC 331127 36 100.0 28 .................................... CTACAAAACGGGTAGCCTTAACCATACG 331191 36 100.0 28 .................................... TTGATTTCCAGCCATTTTACGACGTAAT 331255 36 100.0 28 .................................... CGCAGTCCTTGAGGGTTTTACGGTGAGA 331319 36 100.0 28 .................................... CTCAACCCCGTAATAACTTAAGAAGGTA 331383 36 100.0 28 .................................... TTCACTCCGCTTGTGTGCGTATTTTACG 331447 36 100.0 28 .................................... CAGTAAAGAAAATCGTCCCTACGATTAC 331511 36 100.0 28 .................................... TCCGCCCAGGTAGATTACGATAAAGCTG 331575 36 100.0 28 .................................... TTATAAGTGTGTTACTATATAAGTATTG 331639 36 100.0 28 .................................... TACTGTTTGCTTCAGCGGTGATAATCTT 331703 36 100.0 28 .................................... AGACTCCTACGAGAGCTTTAAGGAGGTG 331767 36 100.0 28 .................................... ATAGTCAAAGTCATAAAACTGATTACGT 331831 36 100.0 28 .................................... CTTTCTTTTGCGGGGCGCGCAAATCGCC 331895 36 100.0 28 .................................... GTGAGACGCTTACGTATGATAAGATGGA 331959 36 100.0 28 .................................... CTTCCATATCATTTTTATCACTAAGAAA 332023 36 100.0 28 .................................... CTCTAAAGGCAAGGCTAATATCTAATGG 332087 36 100.0 28 .................................... ATTTTGTAAGGATTGGGACGAGGACGGC 332151 36 100.0 28 .................................... AATAGCTGTTCGAATAGATTGTTAGGTA 332215 36 100.0 28 .................................... TTACACACCTGATGAAATGCACGATATG 332279 36 100.0 28 .................................... TTACACACCTGATGAAATGCACGATATG 332343 36 100.0 28 .................................... ATCGCGTTAATAATTGCTGGATTAGCAT 332407 36 100.0 28 .................................... CAATCATGGGAACGTGTCCAGCTATCGC 332471 36 100.0 28 .................................... CTTGCAGGCGCGAAGATTATCGTGCAAA 332535 36 100.0 28 .................................... GGCTGGTTGGATTACAGCTTTCCAATCC 332599 36 100.0 28 .................................... CCTGAACGCCTGTTGTGCACTTGCGTGG 332663 36 100.0 28 .................................... CCGGCGTTATAAATCTCATAATTTTTAA 332727 36 100.0 28 .................................... ATCAGCTCTAGGCACTACTCTCGTACCT 332791 36 100.0 28 .................................... CTGATACCACGCGGTCACCTCTATTCAG 332855 36 100.0 28 .................................... ATTACTAAGGAGTTAACTTTAGGTAATT 332919 36 100.0 28 .................................... AGCTGATTACGGCTTGGCGCGAGCAGAC 332983 36 100.0 28 .................................... GCTGGATTGCCGCTTTTCAGACCGCTTG 333047 36 100.0 28 .................................... CCTATCCGTTGGCGCTTTGATATGGGAG 333111 36 100.0 28 .................................... CGGTTGGAACTGTGACGTTTTCCGCTTA 333175 36 100.0 28 .................................... TCACGCTAACCTTGGTAAGATAACCCGC 333239 36 100.0 28 .................................... TCACGCTAACCTTGGTAAGATAACCCGC 333303 36 100.0 28 .................................... TTTACCTATTCGATGAAAAAACCGCAGT 333367 36 100.0 28 .................................... CAGTCACGTAAGACTTTGCGCGTGGAAA 333431 36 100.0 28 .................................... AAGACTTGGGCTACCAGGTCACGGTTGG 333495 36 97.2 28 T................................... TGATTATTTAATTTCCGCTTACGTCTTC 333559 34 88.9 0 .C......T...--...................... | T,G [333579,333582] ========== ====== ====== ====== ==================================== ============================ ================== 43 36 99.7 28 CTATTTTACCAAAGAGGATGAAAGCTAATTCACAGC # Left flank : CAATGGAGAAGGTCTAACAATTCCAAGTAAAATTAATGATTTTGCGCAACAATATGCACTATATGTTGAAGATAAAATTCAGCAGATTGCAATTCCACAATACGTTAAGGATTAACCATGAAAGTTGATGAGGACAGTGGGGGAATGTGGTGTTTAGTAATGTTTGATCTCCCTGTTCAAACGAAGCAACAAAGACATGCTGCTGTAGTATTTAGAGATTTATTACTCGATATGGGTTACTGCATGATTCAGTTTTCTGTCTACGCAAGATATACGCCAACAGCTGAAGGAAATCGTTCCACAGTTCGGACAATTAAGGATAATTTGCCACCGCAAGGCAAAATTCGAGTCTTACATATTACAGATAAGCAGTGGTCGAAATCGTTACGATATGTGAATCTAGAAGAAGAAAATGATGGTGAAACACCGAAAACTTTAATGCTTTTTTAACTGCGAAAAGCCTTGAAAATGCTGGAATCATCCCCTTTGATTAGATTACT # Right flank : CAAGAATGGTGTAATCCTAGACAACGTGAATTGTATCAGAGGTTGAGAGATTTTTCGATCCTGAGTAGGTATTGTTCTAAATGAAATTCGTTTGTTGTCATCATGTTTTTGGGTGCATCAATCATTTTGGTAAGCGAGGTCTTATAGCTATCGGAGATAGCCCACACCCCTTAACCGATTAACCCCCATATTTCCCAACGCTCCCACACAATCAAAAAATCTCGAAAATATCGTTAAATTTTTCTCCTTTTTCAGCGTGTTGCACTTATATAGAGCACCCGGTTCGCGTTAAAGTAGTGTACGCGCGAAAACACGAAAAGAGAGTGCAAACAGCACGACGATAATCAACGTACAGCACAGAAGACAGGCCAAGGCGGAGAGCGTGTACGAAACGCGAGAGGGGAGCGGCGAGAGCGAATCAGCGCCGCAACGCGAAACAAGAAAAAGCAAAAATAAAGAAAACAAAACCTCAACAAACCGAGGTAATGCTGCGCGACCAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTTTACCAAAGAGGATGAAAGCTAATTCACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //