Array 1 25805-28273 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIAD01000041.1 Escherichia coli strain 26-1BK entry41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25805 29 100.0 32 ............................. CCGGTTCGCGAGGGGATCAATCTTCGCGCAGA 25866 29 100.0 32 ............................. CCCGGACGGCGAAACAGATAACCCCAATCAAC 25927 29 100.0 32 ............................. GGCGTTCATGGGTTAACACTGACCCGGCGGCG 25988 29 100.0 32 ............................. TCGCTATGGCCGGTCGTGTCGCTGATAGCCTC 26049 29 96.6 32 ............................A TTCTCATAAAGACGGGGAACCAGCATAACGCC 26110 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 26171 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 26232 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 26293 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 26354 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 26415 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 26476 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 26537 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 26598 29 100.0 32 ............................. GGTTATTTATAATCCATTGTTTCCATTACCAG 26659 29 100.0 32 ............................. CTGGTCGCGGCAGGGCGTTCAATTTTAGGGGA 26720 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 26781 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 26842 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 26903 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 26964 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 27025 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 27086 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 27147 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 27208 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 27269 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 27330 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 27391 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 27452 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 27513 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 27574 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 27635 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 27696 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 27757 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 27818 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 27879 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 27940 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 28001 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 28062 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 28123 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 28184 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 28245 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 41 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1803-247 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIAD01000020.1 Escherichia coli strain 26-1BK entry20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1802 29 100.0 32 ............................. CCAAAGCAAAAGAAGCTGTCGATAATATGCGC 1741 29 100.0 32 ............................. CCTACAGTTGCAATACGCTCACCAGGGCGGCG 1680 29 100.0 32 ............................. AATATACAACGTGCCGTATATTCCGTTCTCTG 1619 29 100.0 32 ............................. TTCAAATTGATACTGTAGCGAGCGTGCGGTTT 1558 29 100.0 32 ............................. CCAGCGTGGTTCGCTCATGGCCTGTCTCCATA 1497 29 100.0 32 ............................. GCGTCTATCAATTGACGCGCGGACGCTACGCC 1436 29 100.0 33 ............................. GTCTATTTGTCGTTAATCGGTACTGATACGGCA 1374 29 100.0 32 ............................. TCTCTCCCGCCATTGGTGCACTGGTTGCATCA 1313 29 100.0 32 ............................. GAATCCCAGAAAATGCAGCGCCCCGGCGCGCT 1252 29 100.0 32 ............................. CAGGAGACGGCCAGCCGGAACGGCGGCGGCGT 1191 29 100.0 32 ............................. AATTTGCATCACGTAGGGGCGGGGCTCAGTGA 1130 29 100.0 32 ............................. ACGGCACGCGTTACGCACCCGGACAGCCAATC 1069 29 100.0 32 ............................. GAACCGCATCAGCGGAAACCGACAACGGGAAG 1008 29 100.0 32 ............................. AATTCAGCAAAATTCGTGACTGACTCGATACA 947 29 100.0 32 ............................. GCAATGGCATGGGCGAAGCAGAACGCAAAAGA 886 29 100.0 32 ............................. CTGACACACTCAAGAAAAATCCCCTGCACATC 825 29 100.0 32 ............................. GCCAGCGTCCTGAAAACACCCTCAGCGTGCAT 764 29 100.0 32 ............................. TCGTGAGCAATTTTCGCTGGATCAACAGGGAA 703 29 100.0 33 ............................. GCAGCCACATCCTGTTTAACTCCATGTATTCGC 641 29 100.0 32 ............................. TCAGTTTTCTGAAAAAATTATTCTCTTATGCT 580 29 100.0 32 ............................. CTCTTCAATCGCTTAAGGATCAGAGAATAGTT 519 29 100.0 32 ............................. GAACTTGATCTGATTTGTGAATTTATTCGATC 458 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 397 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 336 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 275 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //