Array 1 54585-56868 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJDL01000019.1 Lactiplantibacillus songbeiensis strain 398-2 contig19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 54585 29 96.6 32 ............................C CTGTCTGTGACTCTGAACCGTCTGTGATTAAG 54646 29 96.6 32 ............................C GCGCATTCGCCGCTTGATAGATCAGTGTCTGC 54707 29 96.6 32 ............................C CAACATTTGGATGGAAAAACGTACACTGAAAC 54768 29 96.6 32 ............................C ACATAATCTTCATTATCTAACGCCATTTAAAA 54829 29 96.6 32 ............................C AACTTGGTTGGTTTCTCGTAATTAACGTAGTT 54890 29 100.0 32 ............................. GATAAATTCATCGCTAAAAAAGTTCACCGGCT 54951 29 100.0 32 ............................. GATGGAACTAGTTTTGATTCTGTTGATCAGTT 55012 29 96.6 32 ............................C CAGATGACGGGCAGAAGGTAGGCAATTGTCAT 55073 29 100.0 32 ............................. AACAGATGGTTTCACAACCCTGAATGGCTTTC 55134 29 100.0 32 ............................. ATCTGGCGGAAATGTTTTAACCTCACGGCCAT 55195 29 96.6 32 ............................C CAGACGTGTAAACACGGTCATAATTAAGTTTC 55256 29 96.6 32 ............................C CTTCATAATAAAGGCTATCTAAGATACTCCCA 55317 29 100.0 32 ............................. TTAAAACGGTACAAGAAGAGCCGGGAAGCGTC 55378 29 100.0 32 ............................. AATTATAGATAGTGGTGATGAGGTTCAGAACC 55439 29 96.6 32 ............................C GTGAATAAGGATGTTACCAGCATCTTGGAATC 55500 29 100.0 32 ............................. TAGAGAATATGGAGATTTTCAAATGATTAAAA 55561 29 96.6 32 ............................C TAAAAACTTGTCTGGCGAGTTACTCACTTGGT 55622 29 96.6 32 ............................C AACCTTAGGAGGTACTATCATGAACTTAATTG 55683 29 100.0 32 ............................. AACTATGCAGCAACTAAGGCCACACGCGCCGA 55744 29 96.6 32 ............................C CTGTCGATGGGGATACGAGACTTCCATTTAAA 55805 29 100.0 32 ............................. CTGAGCATGAAAAAACCACCGACCGAGTAGGA 55866 29 100.0 32 ............................. GAAGCCGATTGGAACGTTTGCGTATTGGCGTC 55927 29 100.0 32 ............................. TTCTCTAACTAATTTCTGGTCCAATCCCATCG 55988 29 96.6 32 ............................C GCCAGTGGCTACAACCAGTCCTAAGACTGATG 56049 29 100.0 32 ............................. TCACTAATCTATGCGATGGTACGAAGCGGTGG 56110 29 100.0 32 ............................. GACAATCGTTGACCGAGACTTGTTCACGACTA 56171 29 100.0 32 ............................. GACATGGTTCGTTCACATCTTTCATAGATTGA 56232 29 100.0 32 ............................. AAATGATTAATCCACTCTTAAAAGAAGAACTC 56293 29 100.0 32 ............................. CTTAGTTTCAGCGCCAGTCGTGGCCTCAAACA 56354 29 96.6 32 ............................C TGTAATACAGCGGTGTGTAACCCGCTTGCTTA 56415 29 100.0 32 ............................. AGGAAAATCCCACGCTGACCGGAAATGGTTGG 56476 29 100.0 32 ............................. CAGGCATTTGCGAGTGATAATCGAACTCTATC 56537 29 100.0 32 ............................. TATACGGACTATCTATATTATTGGAGTGGTTA 56598 29 100.0 32 ............................. GCAGAAACCAATCCTAGAAAATGCGACAGCAT 56659 29 96.6 32 ............................C ATTATGCCCATGGGGAATAATTGCCGGTTGAC 56720 29 96.6 32 ............................C ACATGACGGAAACCAAACCAGAAGTCGATGCA 56781 29 96.6 30 ............................G GTATGACTGTGCATTATTTGATAACAGCGT 56840 29 86.2 0 .............T........C...TT. | ========== ====== ====== ====== ============================= ================================ ================== 38 29 98.1 32 GTATTCCCCACGTATGTAGGGATGATCCT # Left flank : TAATGTCAAACCTAGTACCAGCATTAAGCCAGCTTTTACAAATTTCTTCATCTTAAAACTCCTCCTTTTTTATAAATCTTATTATAGCATCAATCATTTACCCGTCATCGGACTATTGATGATCCTCACGTTGATGTAAACCCAATTTGCTGTCGTGCATTGGTATTTGCCATATTTATTTATATTAATCCACAATTATTTTACTAGCATAACGTCGTCATATGTCGCTCATACTTACCAGGATTAAACGACAAAAATAATTAATTTTTGGTAAAGAAAAATGTATCTCTATCGCTCTCAAAAATATTAGCAACTATAAACAAATTTCAGTTGCCTTGCAGAGACAGCTCATTCTATTCAGTAAGAAAAGTTCTGAGAACTATTGTCAATAATTTATTGCTAAGGTATGCTTTAAATGAAGGCTTGGTTTAGAGGTACAAACTAATTGAATTTGATAGTTATGCAAATTCAAAATGCTGTTATATCAAGGATCTTTTAGT # Right flank : TTCCGATGCAAGATCTAGTAGAAAACAAAATTAATTATGTCTCAAATAATACTACTCACATGAGCTAAAAATTCGTCTTACAAAGCCTTACCACCGCAATTGTTTTTTTAAATAAAAATTGACAGTCTGAACGTTCTTATCTATAATTGTATCTGTTGTTGTCATGGTAGCTCAACTGGATAGAGCATCCGCCTTCTAAGCGGAGGGTTGTGAGTTCAAGTCTCACTCGTGACATATTCGCATAAATTGAAACATTCTCAAAACCAGAAATCATCGTAAACGTTGATTTCTGGTTTTGTTTATATTAAAAAGAAACTGTAATGTAAAATAATTTTTTGCACAAAAAACAACCCTCCACGAACAGCAACAATCATTGACCCATACACACTTATTTAGTTTTAAGTAATCTTATAACTTGTTCAAGTCATTAGGTCAAACCCTAACCCCATAAAAAGACGACCGTCCAGCACGGAACGGCGTCAATATGAATTACTGCTATT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTATGTAGGGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.60,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3682-5783 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJDL01000041.1 Lactiplantibacillus songbeiensis strain 398-2 contig41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3682 28 100.0 33 ............................ TTACAAGTATTCAGAGACCAAAGGTAGACTGGG 3743 28 100.0 33 ............................ TAACTTTTCCTCTTCGTTTTTTTCACTCCACAA 3804 28 100.0 33 ............................ TTACAAGGAAAGTAACGATACGGTAGCAAATGA 3865 28 100.0 33 ............................ TTATGACTAGCCCGCGCATATACACTACATAAG 3926 28 100.0 33 ............................ TGCCACCGATCATGCCGTTCCACATACCTCGCA 3987 28 100.0 33 ............................ TATTCCAGGCACCGTAGACGACGCCGACATGCG 4048 28 100.0 33 ............................ TTTGCCGATACCACAACTGAAATACATCTGAAC 4109 28 100.0 33 ............................ GTTGGCGGAACTTGTCGGCATCTAGTCAGACGG 4170 28 100.0 33 ............................ TTTAACAACCTCATCACCAGTCACACTGGTAAA 4231 28 100.0 33 ............................ CGGGGCTAAGTACCCGTTGAAAGATGGAAAAAC 4292 28 100.0 33 ............................ TACAGTCTTCAAACTGCTTTTGGTTTGCTTTTT 4353 28 100.0 33 ............................ TGGTCAAACATGGAATACAGATAATTCGATCCA 4414 28 100.0 33 ............................ TGTCTCGAACGTTTTACCATAGCGGCCTTTCAC 4475 28 100.0 33 ............................ CCAAGTCCCGGTGTTTGCCGATGGGAAGGTGCC 4536 28 100.0 33 ............................ CCAATTAGTTTAATTTCAAGAATACTGCCCTCA 4597 28 100.0 33 ............................ TATAAACATACACAAAATGCACATAAAATATTG 4658 28 100.0 33 ............................ CGCCAAAATCTCGGTAGCTTTGGCGTTCTTACC 4719 28 100.0 33 ............................ TGAATACCGAGAACATTCAACCGAAGCTCGATG 4780 28 100.0 33 ............................ TCCATCCATTGCTTTAGGCGCAGATTTTAAGTT 4841 28 100.0 33 ............................ CAGCCTGATAGGTATCATCTAAGCCTTTCGTGT 4902 28 100.0 33 ............................ TAGTCGCAAATACGTTCCCAATAGCTTGCTTTT 4963 28 100.0 33 ............................ CACAAAATTTGAAGCACGGTAAATAGTTCCATC 5024 28 100.0 33 ............................ CTAACCAAGTTATTGGTTCGATGCCTTCAATTC 5085 28 100.0 33 ............................ TATGAAGAATCGTACGAAAAAAGCGATGATTAA 5146 28 100.0 33 ............................ TTGCAAAAGATGATCTAATACACAAACAAATCC 5207 28 100.0 33 ............................ CGACTTGGCCGGAACCGTAAGGAATTACTTGAA 5268 28 100.0 33 ............................ TAAAAAGACTGGTGGAATCTACTTGAAGAAAGA 5329 28 100.0 33 ............................ CCAATTCACAACGGTTCGTAACTTAGTCGTCAA 5390 28 100.0 33 ............................ CAAGTATTGGTATGTTGAGCAGCTCTTCCCATA 5451 28 100.0 33 ............................ TGTACGTTGCCATTCAAGGAACTATAGATGATG 5512 28 100.0 33 ............................ TTGGCGGGCTTCCGGTTATAGTCATAACAGGCC 5573 28 100.0 33 ............................ TCAAAGCCGCCACCCCTTAGCTTTTGTCCTGTG 5634 28 100.0 33 ............................ CATCACGCCGTCATCGGCTTTCAGCGCTTGTTT 5695 28 96.4 33 ..................A......... CTCAGCGCGATATGGCGCAAGTGATACAGTCAA 5756 27 75.0 0 .....T.....G.GT.......-A...A | A [5776] ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.2 33 GTATTCCCCACATACGTAGGGATGATCC # Left flank : GACTGATGCGGGTAATTATTATTTTGCTAACTCCGACATGGACGTGTTGCCAGCAATCTTTAAATTTGCTCATCGTCATGATATTCCAGTTGAAGATCCATTACGGCTGATGCCACTATTAAAAGTGGGCTGGCATGCGGCTGCTAAGACCTTACATGAAACTTATGCGCAATTATGCGAACATACTGGTTATCCGGATTCGAAAGTTTAAATTGAATAGGTGATTTAAAACAAGCTAGACTTTTTTGAAGGGTCTGGCTTGTTTTAATTTAAGTCTTGGATTTATTTGATTAGGATGTGTGGTTGGCAGGTTGATGGGTGTTTATGAAGTTTATAAAAAATATGATGAAATTGAAAGCTTTTTAAGCTGGTAGGGCTTGTTTGAAGAAGCCTTCATTTTTGCTGAGAGATGATTGATGCTGTATAATTTAGAAGTTGAAACTAATTGAAATTGATGACTCTGTTATTTTAGAATGCTGATATATCAACGATTCTTTAGT # Right flank : ATTAAATCAAGCATTCTCCACACGTAGGGTTACCCACAGTTAATCTGTACGTAAGGGGCAAGTCTTATCTTAGAATTCGTCTGCTCATCTATGGTCACTATGGATGAGCTTTTTGTGTTAAATTTCTAATCGCGACTTAATCTAGACTGTCCATGATTTTTATCATTGATTAATAGTCGTAGGTCATTCAGTAAAATACCGGTTAAGCTGACCAAACTAAAAAATGGCCATCAAGTTTTCACTCAATAGCCATTCCAAATTTAAATGATATTAAACTAACCCTTGTGCCATCATTGCATCAGCGACTTTAGTAAAGCCAGCAATATTAGCGCCACTCAGATAATCACCGCTAACCTGGTATTCATCAGCAGCCGCAACCGACTGAGCGAAAATAGTTTGCATAATCGTCTTCAAATGGTTGTCGACTTCTTCAAATGACCAGCTTAGACGCATACTATTTTGACTCATTTCCAAAGCAGAAACCGCAACGCCACCAGCAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACATACGTAGGGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.60,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 70765-71891 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJDL01000008.1 Lactiplantibacillus songbeiensis strain 398-2 contig8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 70765 28 100.0 33 ............................ CCGGACGTATTCGTCATCAAGAATGAAGTAGAC 70826 28 100.0 33 ............................ TAGCTTCTGGCATATCTGCAGGGAAGTATCCCA 70887 28 100.0 33 ............................ TGCTGCCGTTTTAGATGATAAATTTAACAAAGA 70948 28 100.0 34 ............................ TAATGCCTTGCTATCATCAGAAAAGAATTATTGG 71010 28 100.0 33 ............................ TAAGGTCAAAAATGAGGCCGAGCGAACTCATAG 71071 28 100.0 33 ............................ TAGCCGGTCGGGTGGTGTTAAACCAGTTTTTGT 71132 28 100.0 33 ............................ CTTGCTCACATCAATACCCTTAGCTGCCGCAAT 71193 28 100.0 33 ............................ TATGAAGTTTTATGAGGATGGAAAGATTCCTAT 71254 28 100.0 33 ............................ CGTCATAAGCATGTTTGGGACGTTATTCAGGTA 71315 28 100.0 33 ............................ CGTCCATACGGAAAACGCCTTGTGATCCCTCAA 71376 28 100.0 33 ............................ TCTATCGTTGGTTTATACCAGATCAAGATAAAG 71437 28 100.0 33 ............................ CGCATGTCTTTAATTTTGATGATCGCGACATTA 71498 28 100.0 33 ............................ TCTCCAGCGTCCCTACTAAACCGATCATTACCG 71559 28 100.0 33 ............................ TTAGAGCTAAGGCCGTTTTAATCACGTTACCAG 71620 28 100.0 33 ............................ CTTCAAATTACTGCACGACCGAACCAAAAACAT 71681 28 100.0 33 ............................ TAATCAATATTTGCCAATCGTTGCTGAATTAAT 71742 28 100.0 33 ............................ TATGCTTAACCCGGAAGCTGTCGCAAATGCAGC 71803 28 100.0 33 ............................ CGGCTCACTGACCGTGACTATCTTATCAGGGTC 71864 28 92.9 0 ..........................TT | ========== ====== ====== ====== ============================ ================================== ================== 19 28 99.6 33 GTATTCCCCACATACGTAGGGATGATCC # Left flank : CCGCATGTGAAACGTCATGCGTTGATTGCATCCGATTTTGCTTTGGAAGCATTACTGGCGGGAACAGCACAACTGCAATCAGCAACTAAGGAGCGTACTTGGCAGTGTGCGCAATTGTTAGGTACGAGGTCACAAGAGTAATTAGTAAGGGACTTAGCTATTGGCAAATAGTAAGAATAAAACGAAACTTAAATTTTAAGGATATTTCCAATCTATTCATGAAGTAATCACGGTCAGATTCTATCTACAATTAGAATTTAATCGTGATTTTTGATTTAAAATCAATATGTTTTGATACGCATAATGTGAGTATGAAATTAAAGCCTGGATATTTTTATCAATGTTATGTACGAAAATCTGGTGTGCTATTAGATTTGTTTATTGTTAAAGACTGATTACTGTTATATGCTATAAAATATAGTCTGAAGGTCAGGATGCAAACTAATGTAAATTGTTGGTATTGGAAAATGAAAATGCCGTTATATCAGCGAATCTTTAGT # Right flank : TTAAGATATCTGAACAGTTCTACCTCGAAGAAACACATTCTCGAAAAGCTCAGATAGCTGTGAGAGCTTCTATTCAGAATCGTTCAACACTGGATAATTTAGATGATTTTAAAATAATCGTTAATACTTTAGCTTACATTGATATAATATAATTGTAAGTTTTTATTGTAGAATCGCTATAATGTTTTTTCAGTGATTATTTAGAAGCAATCCCTTTAGCTAAAGTGGTGATTGGCCAAATGTTACTATGCATTTTCTACATGATATGGGGCGATTCTTTGATGTCATCTATTAAAGTCCCTTCGTTGTGAATGGTAAATTTGATAACGAAACTTAAAGTGGTTTTTCAAGTAATAGAATTATACAGATATCGCAATCTGTTTACTAAGCATAACAAGAATTGGTGATATAGACTTGTGAGCAGTGGTTAATGAAGAATGAGATTAAATGTGCTATGAAAATATGACGGCGATGGTAAAAATGACATCTCAGGAGATTAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACATACGTAGGGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.60,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 81977-85059 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJDL01000008.1 Lactiplantibacillus songbeiensis strain 398-2 contig8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 81977 29 96.6 32 ............................T ATTTCCGGCTTGGACATTACCTAAGTTGGCTG 82038 29 96.6 32 ............................A CAACTGTTTGTAGAAGTATTTCTGAGCACTCG 82099 29 96.6 33 ............................T TGAAGCTGGTATGAACCACGGTACCGACAACAA 82161 29 96.6 32 ............................T TTGACCATCACGATCAACAACTTGCTGCTTAA 82222 29 100.0 32 ............................. GGCGCGCCGGTGATGCTGTCAAATTTGACTAC 82283 29 96.6 32 ............................T AGATGGGCAAACCATCGATATTTGTGACGAGT 82344 29 100.0 32 ............................. TAGGCTCAGCATTCACATCACTTCTTTTTAGT 82405 29 100.0 32 ............................. TTAAATGCCTGATTGCCAAGCTCTCTAGCTTT 82466 29 96.6 32 ............................T GTCCTGACGTGAGCCACGAATATTTTGTTTGC 82527 29 100.0 32 ............................. AAAGTATCTTGGAACGAAACTAATCAAGGAGA 82588 29 96.6 32 ............................T AAGCCAGATAAAGCAGTAAAACAGATTGGCAA 82649 29 100.0 32 ............................. AGGACTTGTGTACTACCTAAGTTATCAACTCG 82710 29 96.6 32 ............................T ATTTATCAAAACCGAACTCAAACCGGACTTTA 82771 29 96.6 32 ............................T TCGATTGCAGAAGCCTTTAGCGCAATCATTTT 82832 29 100.0 32 ............................. TTTGACAACTTTGTCCATTGCGGTCGTTTTAT 82893 29 100.0 32 ............................. ACCACTTTAGCTGGTACGGTTGGCGGCAAAGA 82954 29 96.6 32 ............................T AACCGGCATTGCCTTTTGAACTAATTTTTCCG 83015 29 100.0 32 ............................. TCACCGGCCACGATTGAACGTAAAGGTAAAGA 83076 29 96.6 32 ............................T GCGGGCGATGCCGGAACTAAGCTATTTAGTGT 83137 29 100.0 32 ............................. TGAGAACTCCTTAATTAGTGTCTCAGCCATCG 83198 29 96.6 32 ............................A CTATCAAACGACTTGAAGTCTTTAAAATGTAC 83259 29 96.6 32 ............................A TGTTCTTGACCAACTTTTTTAAATTACTGTCA 83320 29 100.0 32 ............................. GTCATCGCTATTCTTGCCGAACAACAACCAAG 83381 29 96.6 32 ............................T TATCAATTTTTGCTTTATTAGTTTTACGATCG 83442 29 100.0 32 ............................. GAACTGTGATTGGAAACTTACAGCGGCAAATG 83503 29 93.1 32 ..G.........................T CATGATTCCCATAGAGATACCAGAAAATGCCC 83564 29 96.6 32 ............................T TCAGCAATTGAAGTTTCTAAAAAGAAACACAA 83625 29 96.6 32 ............................T AAAAATAAAGTATACAAGCGTGGCTATACCTT 83686 29 100.0 32 ............................. TGAAACCTGTGCTTTGGTAAATGCCCCACTAA 83747 29 100.0 32 ............................. TCGGGTGGTGTGGGTGCGGTCTTCACGCCAAT 83808 29 100.0 32 ............................. TCCAGCTAAAACAAAAAGGCTTCCAAAAGTGT 83869 29 100.0 32 ............................. CAGTGCATGACATCCGTTGCTACCTGACCGTT 83930 29 100.0 32 ............................. AAGAACACGTACGCAAAAATCTTACGTTATCT 83991 29 96.6 32 ............................T AGGCATCCCGAAAGTAGGCAACACAAAGTGTC 84052 29 100.0 32 ............................. GATTGGGAGCCTTCAACCGCAACGAAGACAAT 84113 29 100.0 32 ............................. CTTGCAAGCTGGCTTACCTGCATCATCTTCTG 84174 29 96.6 32 ............................T CACCTCATGTAACTAAGAAATATACTAATATT 84235 29 100.0 32 ............................. ATTGGGAACCGGTTAATCATGACGCTCATATC 84296 29 100.0 32 ............................. CCGTAACCCCAATTTTGTTTCAAAGTATATGA 84357 29 96.6 32 ............................T GAAGTGAACGCTAAGCAGAATACTATCGGATA 84418 29 100.0 32 ............................. GGATCGACTAGATGCGATTGAACGATTTCAAA 84479 29 96.6 32 ............................T TATTAATGTGGGCTTTTATATCGACACCCGGT 84540 29 100.0 32 ............................. GCTCAACGCTTCTCGGTGATTACCTTATGCCA 84601 29 96.6 33 ............................T GTAATTGTATGTTCAATTAATAGCTGGCGCGGT 84663 29 96.6 32 ............................T ACGCCATATAAATCACTCGGCCCCGATTTGAT 84724 29 96.6 33 ............................G CAACGAATTTCAAAGAAAGCTATTGATGAGTAT 84786 29 96.6 32 ............................T GAAGATGTAGAAGATAAATATTTAGAAGCTTT 84847 29 96.6 32 ............................G GACATTAGGGCTAAGTTCGGATTTAGTTACTG 84908 29 96.6 32 ............................T AGTCGTTGACTTGCCGTGTTGTGGTGGCATTT 84969 29 100.0 32 ............................. GTCCCAGCGGTAATCTTACCGGTCGATAAATC 85030 29 89.7 0 ...........A..C.............T | T [85052] ========== ====== ====== ====== ============================= ================================= ================== 51 29 97.9 32 GTATTCCCCACGTATGTAGGGATGATCCC # Left flank : ACGCAGGATGAAATTATCTCAATCGGTGCAGTCAAGCGAGTGAAGGGTAATCAAGTAGATCATTTTTACAAGTTAATTCAGAGTGATCGAAAAATCCCTAAAAAGATTGTTGAGTTAACTCATATCACTTCTGAAATGCTAGTGTCAAAAGGGGCTAGTTTAAGTGATGGGTTGCAGGCATTACGGGTGTTTTTAGGTGATTTGCCGGTAGTTGGTTATAATGCACACTTTGATGGGTTGTTTTTGACCAATGGTTTTAGAAAAATTGATCAATCAGATTTGTCTAACAAGGTATTAGATCTGATGCCAATGGTGAAGAAGTCGGATAAGTTTTTGGATAATTATCGACTACAAACTGTATTGAATGAGTACAAAATTGAAAATAAAAATCCACATAACTCGTTGTCAGATGCTGAGGCAACTTTTAAACTAGCAATCAAACTAATTGAAAATGGGGTTTTGAAAATTTAAGAACCGCGTTAGAACAGCCTTTTTTTAGT # Right flank : TAAAGAAGCAAGTGATTATTTTAATGAAGTGTATTTCCATATTAACAGATATTTCTCAGTTGATAAAAAAAGGCATTAATTACGATATTGAAATTCCAATATCACGATTAATGCCTTTTTAGTTACGTTGTAATCACTTCAAGCAGGGCTAACAAAGTCCTTCACAATATTACTCAGTCTTCCCAATCACCAATCCATACCAGTTTCCTTTAAGCAGTTCCCCAGATTCAGTGACCTTACCGCCCTTAACGTTATTAATGATATAAATCCCTAATTTATATCCAGACAGTTTAGCACGCTTGGCCTTAGTATAGCCGGCTTTATTCAGCAACTTCTCAATACCAGCAATCTTTTGCGCATTGGTTTGTGTTTTATGCGCCATTAAATAAGTAGCAACGGATTCAAATGGCACAATGTCTTTGTAGCCGGTTGTTTCAATGGTTTCGGGGGCGTCTTCTTCCCAAGTATCATTGGTCGCGTAATTATAGGCGGCGATACGC # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTATGTAGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.60,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //