Array 1 166154-164677 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHNB01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain RS15 scaffold1_size545212, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 166153 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 166092 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 166030 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 165969 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 165908 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 165847 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 165786 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 165725 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 165664 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 165603 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 165542 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 165481 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 165420 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 165358 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 165255 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 165194 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 165133 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 165072 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 165011 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 164950 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 164889 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 164828 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 164767 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 164706 29 96.6 0 A............................ | A [164679] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 183840-182286 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHNB01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain RS15 scaffold1_size545212, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 183839 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 183778 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 183717 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 183656 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 183595 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 183534 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 183473 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 183412 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 183351 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 183290 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 183229 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 183168 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 183107 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 183046 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 182985 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 182924 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 182863 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 182801 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 182740 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 182679 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 182618 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 182557 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 182496 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 182435 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 182374 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 182313 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //