Array 1 780987-779525 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMCR01000001.1 Stappia taiwanensis strain CCM 7757 sequence01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 780986 31 100.0 33 ............................... GATGACGCAGAACGGCCTGATGACCCGGAACGA 780922 31 100.0 33 ............................... GCCATGATCATCGGCAGATCCTGCGGCTTGGCG 780858 31 100.0 35 ............................... CGCTAGCGATAGGGACAGCGATCTATTGCGAGATA 780792 31 100.0 37 ............................... GCGCTTCGCAAGAGGTCTGGATTTCAAAATCGGGCGC 780724 31 100.0 34 ............................... GCGCTGGCATGGATCAGCACTGGGCCAAGGCGCG 780659 31 100.0 34 ............................... AGACAATCCAATACATGAAAGATACAGCGTTGAT 780594 31 100.0 34 ............................... CTCAGCGCCGTAGCGGCGATGGAGGACGCGGATC 780529 31 100.0 33 ............................... CACCGTTACGGGGGACGTGACGCGCGGCAACTT 780465 31 100.0 35 ............................... ACCGCGCTCACGCTCACATGGGTGCTCGATGAGAC 780399 31 100.0 35 ............................... TTCGGCGATTTGCCGTGCGCGCTCGGTAAGGACGT 780333 31 100.0 34 ............................... GTCGGAGCGGGAAAGGTCCTTGAAATCTCCGACG 780268 31 100.0 34 ............................... CAGTAGACGTAGTGCCCGGCGGTCAGCACCTCGC 780203 31 100.0 34 ............................... TCGATCTGGTACGCGCCAAGATCAACATCATCCG 780138 31 100.0 33 ............................... ATCCCCCAAGCGATCGCATCGACCGCGGATCGC 780074 31 100.0 34 ............................... CGGCGTTGAGGCGGCCGAGCCGCAGCCGCCGGCG 780009 31 100.0 33 ............................... ATCTCGGCGATCCGCTCATTGAGCGCCTGGATC 779945 31 100.0 34 ............................... ACGGCGGCTTACGCAAGACCGCGAGAATACAAGG 779880 31 100.0 34 ............................... CGCGTCTGGGGTTTCCTCTGCAATGACACGAGCC 779815 31 100.0 34 ............................... TCGATTTCTGAAAAGGCCACCGGCCGCCACCCCA 779750 31 100.0 33 ............................... TGGACTCCTACGGCACGCCGCTTGCCCTAGCCG 779686 31 100.0 33 ............................... CACCAGCACCAGCGCGCCCGACTGAATCTCCAG 779622 31 100.0 36 ............................... TGTTCAAGCGCGAAGGAGGCCTGACGGCCGTTGACG 779555 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 23 31 100.0 34 GTCGCCCCCTCACGGGGGCGTGGATTGAAAC # Left flank : TGGCGGCCCGGCGGGTGATCGCTTTCAAGCACGCGTCCCCGCTCGGCAACGCGCCGGCTCATACCCTGTTCGACCGGGTCGAGGTGCGGCGCCGCTCCAATGGCGATTGCTATCCGCTCGGTGATCCGCGCCTCGACAACCAGCCGCCGGCCCGGCGCTTCGAGGACTACGAGGTGCTGCTTCACCGCGAGGCCCTGCCGGAGGGGGTGGAGCTGATCGAGGTGCTGTAGCTCTTGTCTTTGCTGCAAAGTTGCGTGGCGGCGCCCCCGATCCGGAGGGCGCCGCCGTGCCGTTGGGGGAGCGGGGAAGCGTCGCTCGCCCCGCGCGAACCGCAAGCGTGCCGGAAAACCCCGGGAGGTTCGCGCTCCTTCTAGGTTATTGAAATCGCTGATCTTTTTTCTACGGGCGGGGCCGCCCGACCCTGCGCTGCGCGTCAAGCGAGGCAGGTTCGCGCAACGCGCCCGATTTTGTTTGGTCCCTCAATATGATAGCAAGGGGAC # Right flank : ATGGACGGCCGCAAGGCTCTGTTCGCACGGATCCGTCGCCCCCTGATTGGGGGGGGCGGGGTCAGGCCGGGGCGGGCAGGGCGCGGGCCTCGCGGAAGGAGACCAGCCGCCGGGCCTGTTCGTCCCACAGGACGAGCTTGATGCAGCCAAGGCTCTGGCGGAAGGTGATGCGGCCGATGTCCCGCAGTTGCGGGTGGTCGCGCAAGACCTGCGGCAGGCGGTAAAACGGCACCTTGCTGGACAGGTGATGCACGTGGTGGATGCCGATGTTGCCGGTGATCCACTGCAGCACCGCCGGCAGGTCGTAATGGGAACTGCCATGCAAGGCGGCATGCTGGAAGGTCCAGTCGTCGCCCTCCGACCAGTGGGTCTCCTCGAACTGATGCTGGATGTAGAACAGCCAGACACCGCCGGTGGCGGCCATCAGCGTGATCGGCAATTGCACCATCAGGAACGGGCCGAGGCCCATCAGCCAGATCAGCCCGGCGACCGGCAGGGCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTCACGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.30,-7.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 395124-394428 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMCR01000004.1 Stappia taiwanensis strain CCM 7757 sequence04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 395123 36 100.0 30 .................................... GCGCGGTTCTACGATCAGTTGGTGCATGGA 395057 36 100.0 30 .................................... TGGTCGGCCGTCTGGATGCTCAGGCGATCC 394991 36 100.0 29 .................................... TAGTCGAAGGTCACCAGATCGACCCCTTT 394926 36 100.0 30 .................................... GGCATGAGATGCGGAATCTTCACGCCGTCG 394860 36 100.0 30 .................................... GCGCCCGCCTGTGGCCGTTCGTGCCCAACT 394794 36 100.0 31 .................................... CGCGCACAGGCCGCGCCCTCCATTCTCGACG 394727 36 100.0 30 .................................... AGCTGGAGGCGGACAACAAGCGGCTGACCG 394661 36 100.0 30 .................................... TACCCTAACTACGTCCCCTTTGTGGCGGCG 394595 36 100.0 30 .................................... ACGGGTGGTCGCGATTGCCAATCGACCGGG 394529 36 100.0 29 .................................... AGGCTCTTGGCGTAGTCGTCTTCGGACAT 394464 36 88.9 0 ......................G......A..G..A | G [394438] ========== ====== ====== ====== ==================================== =============================== ================== 11 36 99.0 30 ACGGTAGCAGTTCAGAAAACGCAGGCCAACCGCAAC # Left flank : GCGCCCGAACCGCTCGTTCTCGCCGGTTTGGGCCGGGAAGGGGAGGCGCTGTCATGACCACCCTTTACACGCAGAAACGGGGAGAGCGGACAGCGCCGACATACCTGTCCGCTTACAGGCTGATGTGGATGCTCGTGACCTTTGACTTGCCGGTGGAGACGAAGAAACAGCGTGCCGCCGCGACCAAATTCCGGCAATATCTGCTGGATCAGGGTTTTGAAATGAGCCAGTTGTCGAACTATCTGCGGCTGGTCAATGGCCTGGAACAGTTCGAGGCGCATGTGCGCCGGATCGAAGCCAATCTGCCGGAGCGGGGCGATGTCTTCATCTTTCAATTCACCGATCGGCAATACGAAAACATCGTCCGCTTCAGCGATCAGTCGCGCCGCGCGCGGAAAAAGAATCCCGAACAGATCGCGCTTTTCTAGCAAAGGCTGGGCGAATTTGCCGCCGAGAAAGGCCCAATCCGCTTGGGTTTTCAAGGGATTGGGCCCTTATCT # Right flank : ACGCCGGAGCGTTGGGCCTTCCGACCCAAACACCCCGGCGCTCCAGAGCAAGGCTACCGATTACTTTTCGGCGCAGGCGCGGATCTTCTCCAGATCCGGACCGTTCGGCGTGCGGCCGAGATTGAACGGTGCGGAGGCATCGCGCCAGCCGCTGTAATCCTGCAGGTAGCTGAGCTGGCTGAGGTAGACCTTGGCCGAGGACGGGTTCTCGCAGGCGGTGTCCTCGATCACCTTGTTCGCCATCTGCTGGACCTTCTCCAGCGTCTCGTCGTCATAGCGGGTGATCTCGACGCCTGCTTCCTGGAACTGGCGATAGGCTTCCGAGGCGCGCTTTTCGGTGAAGGCGAGCGACCACAGCAAGGTGGCGTCGGCTGCGATCTTCAGCTTCTCCTGGGTCTCCGGAGACAAGGCATCCCAGGCCTGCTTGTTGATCATCACCCCGAACACCGAGGCGGACTGGTGCCAGCCCGGGGTCGCCCAGTGCGAGGTGACCTGATGGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACGGTAGCAGTTCAGAAAACGCAGGCCAACCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,13] Score: 0.37/0.37 # Reference repeat match prediction: R [matched ACGCTAGCAGTTCAGAAATCGCAGGCCAACCGCAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 7628-9608 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMCR01000007.1 Stappia taiwanensis strain CCM 7757 sequence07, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 7628 31 100.0 33 ............................... AACAGGGTGACCGCAGGTGACAACACCCGGGGC 7692 31 100.0 34 ............................... AAAGAACATCGAGCCGGCAGAGACAGCGCCCCCT 7757 31 100.0 36 ............................... GGAGGACAAGAGCCGGATTGAAAAGGCGTACAAGGA 7824 31 100.0 35 ............................... GCCCGGCGATCACGTCCGGATCATCCGGCGCGCCA 7890 31 100.0 34 ............................... AGAACAAAATTCTCCGGACGATGAATACAATATG 7955 31 100.0 34 ............................... GTCGCGGGGCATGCTTGCATTGGCGCGTATCCTG 8020 31 100.0 33 ............................... AGCCAGTCGGCAAACGCCCCGGCAGCCGCCCTT 8084 31 100.0 34 ............................... TCATACAGCGCAGATTACGATCACGACCCTTTTG 8149 31 100.0 34 ............................... GCGGAGGTCTCGAGCCTCCTTGATGAGATCCGTA 8214 31 100.0 34 ............................... GGAGGTGATCGCCATGACGCCGCGCGAGCTGCCT 8279 31 100.0 34 ............................... GAGGGCGACCAGTGGCAATTGACCCATGACGCGC 8344 31 100.0 35 ............................... ATCAACTACAAGGGCGCCGATCAGTTCGACAAGTC 8410 31 100.0 35 ............................... CGGGTGCGGGAAGCCCGGCCGGACTCGAGCGGCAA 8476 31 100.0 34 ............................... GAGGACATCCCGACGGCCACGACCGGCGTCTCGA 8541 31 100.0 35 ............................... CCGCTGCTGCCGGCATTTGATGGCGCCGGCGGGAT 8607 31 100.0 33 ............................... TCGCGGTGGCGCTGATCAGCGGGCTGCTGCTGG 8671 31 100.0 35 ............................... GATCGTGAAATCGATTGTTTGGCGGATCAGCGGGA 8737 31 100.0 35 ............................... ATCCGTCGCCATCATGCGCCCCACAAAAAAGGCCC 8803 31 100.0 34 ............................... CAATATTGCGCCGTCACATCGGTCGCGCTGTCGA 8868 31 100.0 34 ............................... GCGAGGCGCTGGCCTCGCTGGTTGCCGAGCTGGC 8933 31 100.0 34 ............................... GGGAGGACCCTCGATCCGATCCCGCGCGCGCAAT 8998 31 100.0 34 ............................... CGCCAGGACCATCGCGACGCCTCGATGATTGGCC 9063 31 100.0 33 ............................... GCCGAGTCCACGCCGATCGTGTAGAGGTTGATC 9127 31 100.0 34 ............................... CGAACGGTGTCCAGTTGCTGTTCGTCGGCATCCG 9192 31 100.0 33 ............................... GTGCGCTCATTATGGGGCCGTACATTGGGTGTT 9256 31 100.0 35 ............................... TGGCGTCATGATGATCTCGGACGGATCGACAAAAA 9322 31 100.0 33 ............................... GTTGCGACAGCATACCAGCCATTCGGCTCAAGG 9386 31 96.8 34 A.............................. CGCCGATGAATTTATTTTTGGTGGCGGTGCGGTG 9451 31 100.0 33 ............................... CCTGAAACGGATGATATTTCGGGCGGCCGGTCG 9515 31 100.0 34 ............................... GGGTGCAGCAGCTCAAAACGGCGGGTGGTCAGGG 9580 29 77.4 0 ........-..G...........-C..CCT. | ========== ====== ====== ====== =============================== ==================================== ================== 31 31 99.2 34 GTCGCCCCCTCACGGGGGCGTGGATTGAAAC # Left flank : CGATGCTGGTGCTTGTGACCTATGACGTGCGCACGTCCGATGCCGGCGGGCCCGGGCGATTGCGGCGGGTCGCCAAGGCTTGCCGTGACTATGGGCAGCGCGTGCAGTTTTCGGTCTTCGAGATCGAGGTGGATCCGGCGCAGTGGACCCGGCTCAAGGCACGGCTGGAAGCGGCGATCGACCCGGAGGCGGACAGCTTGCGCTACTATTATCTTGGCGCCAATTGGCAGCGGCGGGTGGAGCATGTCGGCGCCAAGCCGGCCACCGATCTCGGCGGAACGCTGATCATCTGAGACCGGGAAACCGGCGGAGGTCCGGGCCAGCGCGAACCGCAAGCGTGTCCGGATTCCCCGGGAGGTTCGCGCTGGCCTTACAGGGATGAAAAAATTTGTCTTTTTCCAGACAGGTGCGGCATGGGCGATGATTTGTGGACACGTTTTGCAGAGGTTCGCGCTGGCGAACGATTTTTCTTTGATCCGGCAACGTGATAGGAGGGGGAC # Right flank : CAGCCGCCGGAGGGCTGGCCCTGCTGTTGGCGCAGCAGCGACAGCAGCAGGGTGTCGGCCCGGTCCCGGTGCTGCTGGTGCAGCCGGGTTGCCTCCGCCTCATCGCCGGCGCGGATCGCCGCCAGGATCGCCCGGTGCTCCTTGTCGGAGATTACCGGCAGCGGGCGAAGCCCGGCGATGGCGATGCGGGCGCGGTATTGCTGGTCCCAGAGCTGGCGCAGCATGCCCTGCAGGCGCGGGTTGCCGCAAAGGGCGACCAGTTCGGCGTGGAACAGATCGTCCAGCTCGGACCATTGCGCGATGTCGCCGCGTTTGGTGGCCCGTTCCATCTGGCTGAGAATGCCGTCAAGCCGCTCGTAGTCGGCCGCGCTGATGCCGCGCCGGGCTGTCAGTTGCGCGGCCTTGACCTCCAGGGTCGAGAACACCTGGTAGATCTGCTCGATCTCCTCGATCGACAGCGCCCGGACGGTGATGCCATGGCGCGGCCGCACGTCGACAAG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTCACGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.10,-7.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //