Array 1 2312096-2315694 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072017.1 Akkermansia muciniphila strain AkkB40 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 2312096 31 100.0 33 ............................... CGCTTCCTGGGTCGGCGTTAACCGCATTTTTGG 2312160 31 100.0 33 ............................... CCGTCAATGTGGTGCACGTCGTATTCACGTCCA 2312224 31 100.0 34 ............................... GCAAGAATTCCGACGGAAGGTTTTCCGTCCGGTT 2312289 31 100.0 34 ............................... CGGTTGCGTAATCAAAGCGCACCGATTTTATTCG 2312354 31 100.0 35 ............................... AGCATCCTGCATTTTCGAGCTCACATGGGAGTGCA 2312420 31 100.0 34 ............................... CCCTTTCAGGGTCGGGCGGCCCGCCGGGTCAATC 2312485 31 100.0 34 ............................... TTCAACGTCGGCCTTGGAAAAGTCCAGCTCAATC 2312550 31 100.0 33 ............................... CGGCCATTAGCCACTCCTGGACAAAACGCTCAC 2312614 31 100.0 34 ............................... TTTGTTGTTGGTAATGAGAGATTTTTCAGGAGTG 2312679 31 100.0 33 ............................... TCGGAATGCCGTTGCGCTGCAACGCAGCAGTCA 2312743 31 100.0 33 ............................... ACGTAGTACGCCTTCCCTCCGGTCTCGTACCGG 2312807 31 100.0 34 ............................... GCCGAACAGGAACCTGATTGCGTCCTCACCTCCG 2312872 31 100.0 34 ............................... AAGCACTTAGAATAGAATCATGAAAAAACCCATA 2312937 31 100.0 33 ............................... AATGTATGAAGTAAAACAACTCAAAGAACAAGT 2313001 31 100.0 34 ............................... GAGAAGGCCAACGCGTCCCTGAACAACATCATCC 2313066 31 100.0 34 ............................... AACGGCTCAGGGACCAGTATTCATGGCGGCCCGC 2313131 31 100.0 33 ............................... TGCTGGATAGCCACGCCTTCCTGGTTGGCATTG 2313195 31 100.0 33 ............................... AACAACTGCTTCAGCAATTCAACGTCATTATCG 2313259 31 100.0 34 ............................... AATCCCCGGCCAATGGCTTCGCTCAAAGCCTTCG 2313324 31 100.0 34 ............................... AATTCCTGATTGAGGTGACCATCGAATCCATCCG 2313389 31 100.0 34 ............................... ACCGAGGACTTACTGATTCTATCCCGCATAATTC 2313454 31 100.0 34 ............................... AGAGTAAGTATCTTGCTGTTGACGTAACCGGAGG 2313519 31 100.0 34 ............................... CAATACCTTGAATGCCAATGCTATCCATGGCCGT 2313584 31 100.0 34 ............................... CCGTCCACTTGTCCATCATGGAAAGAAGCCAGGG 2313649 31 100.0 34 ............................... CGCATAGGTGATGAAGGCAGGGGAGAAGTTACCT 2313714 31 100.0 34 ............................... CGGGCTCGTAGCCTCTGTTGGCGATGGCTGGAAG 2313779 31 100.0 34 ............................... GACCCCAGCAATGAAAAGCTGGACCCGGACTTCT 2313844 31 100.0 32 ............................... ACCCGAGGGCACCCTGCTGGTCCTGGATGAGT 2313907 31 100.0 35 ............................... CTGAATAGCTGGATAATTTTTGAAGGGATAGGCAA 2313973 31 100.0 35 ............................... CTCCATGCTAGCGGCGTATATAAAATGACGCACAA 2314039 31 100.0 34 ............................... ATAAGTTGTATGTGGCTAGCTGCTTCAGCGTCAT 2314104 31 100.0 35 ............................... TATACGCCGGGTGATGGACCTATAGCTTTCAACCT 2314170 31 100.0 34 ............................... GTAACCTACTTCATAGGGAGTAGGAATATGGGGT 2314235 31 100.0 34 ............................... AGCGTCAATGTCCATGTCTTCATCATTGTCCCTC 2314300 31 100.0 34 ............................... TGTTTGTGGAGACCCTTAGCGGCAAGACCAAAGG 2314365 31 100.0 34 ............................... ATTGTATTATGTGGTTAGGTTTATTTATTGTGCC 2314430 31 100.0 34 ............................... CGGATTGGATTCAGGCCGTCCCGTAGGGGAAGCT 2314495 31 100.0 34 ............................... TGGCGCGTTTCGGTCAGGTTGATCTGGTAGCGCA 2314560 31 100.0 34 ............................... TTTTCCTTATCGTTTCTCACAAACCCTTCCGGCA 2314625 31 100.0 33 ............................... TGAAGGTGTGCCGCAAGCGAAACAATACAATAA 2314689 31 100.0 34 ............................... TTGAACTTCGCAAGGTCCGAGTTGGTGATACGGG 2314754 31 100.0 34 ............................... ACGGCATCTGCCTGTTCCCCGTTTTGCCGGAGGA 2314819 31 100.0 34 ............................... TCTCCATGGCGTTGCCAAGAACATTTTTCAGGAA 2314884 31 100.0 34 ............................... TAATCATATCCCTACTACAACGGTAGGAATTAGA 2314949 31 100.0 34 ............................... TGTACTCCAATTTCAGGGAGGATGTAGTTAACGT 2315014 31 100.0 34 ............................... AATCGCTTTCCCGCCTTTGGCCTTGCTTGCTCGA 2315079 31 100.0 34 ............................... TTGCAAATATAGATAAAGATTAACTATGAATAAG 2315144 31 100.0 34 ............................... AAGGAGCTTTTGTTGGTCCTTGTGGAGGGCAAAT 2315209 31 100.0 34 ............................... ATATCCAGGTGCCCGCGGATGCTCTCCGCCCCGG 2315274 31 100.0 34 ............................... GAGAAAGTCACCCTTGCGGGTATTTGCTCCGGCT 2315339 31 100.0 34 ............................... ACAGGCCCGGCGCTGGAACGGCTCATTGACTACC 2315404 31 100.0 34 ............................... CACAGAGTGGATATTATAGATATAAAAGTATTAG 2315469 31 100.0 33 ............................... TCTTGTTACCTAAGAGGCCCCTACTATGGCACA 2315533 31 100.0 34 ............................... CGATAAAAAACAGATACTTTCCGTGTTACTGCAA 2315598 31 96.8 34 ........T...................... CCGGGAGCCAAGACAAAGCGGCTTGTCCATGTCA 2315663 31 83.9 0 ....T................A..A....TA | G [2315676] ========== ====== ====== ====== =============================== =================================== ================== 56 31 99.7 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GCCCTGTAAGGGATATTCCGTCATTCATTCGTTAACGGGAGCCGTCCGCAAGGGCGGCTCCTTTTTAATGGCAGCGGAAACCGGAGGGGAATTCGGCTTCCGGCAATGGGGAAAACGGCGCGCCGCCCGGGAGGCCTGTTGTGTATGTGTCTCCATGTTGGCGGCTCCGGGGATGCACGGTTCTGTTTGAAGGAACGTGGAAGATGTTGCTGGACGCGGCAGAGGGGAACGGCTAGCATCAATGAACCAAGTTGAATGCAAGCCGGACCGGACGCGGCGAAGATGGAATATTACGGAATAACGCCGCGTCTGATGCCGCCTTGCGCCAACCCCAAGCTCACAGAAAATTCCCGGGAGACCGGCGCTTGCTGTAAGTGATTGGGAAATGGATATTGACAAAAGAATCACCTCTTATCGGGCCTGACCGTATCCGGCTTCCGCATCAGGTTGGCGCAAACCCCTTGCTGCGCCCTTGATGCTCAACCCGTATCCTCCAGGCC # Right flank : AGTGCAGTTGTTTTTAATGATGTCTGCATGGTAAGGGAGGTGATTATTTTGATAAATGGTTTTAAATGGTTATTTATTTAATATTCTTTTAAGGAGGATTTTTATGTTGGGGAGGACGCCGGATGAACAACTTTCCGGATGGTTTATTATGGTTTCCGGACAGCCTGTCCGGAAAAGGGAAGCAGGCAAGCGGTGCATTTCCTGCGGCATGGGATTTTTTTCCGCGTTCACAGTTTGTGATGGATGAAGCCGGAGCAATCCAATATAAAGATAAGATGCATATAGACTGGTTGAATGATTTTTTGGAATGGACGCCTATTTTGCTGATGGTGCTGGTAGCGGTCGTTTTTCTGGTGGCGCTGAAATGGAGAAGCGGCAGGATGAAGAAGTTTCTGGAGGAGTGGAAACGTAAGATCGTCCGGCAGGCGGAAGCCGGGAATCCCTCCGCCCAGTTCCGTCTGGGGCGCATTTACCAGGAGGGGGACGGCGTGGAGAAGGAC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2514374-2519016 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072017.1 Akkermansia muciniphila strain AkkB40 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 2514374 31 100.0 33 ............................... ATCTTCAAGCGTTGTGGAATCACCTTCGATGCC 2514438 31 100.0 33 ............................... TCACATACCCAAGCCGCATCCCGGAAGGGGAAA 2514502 31 100.0 35 ............................... GGACAGCGTATCCCCGTGGATAACTGTTGCCGGGA 2514568 31 100.0 33 ............................... CGGCTCGTCAAGCTCGTCCCAGGCGGACTGGTT 2514632 31 100.0 35 ............................... CCGCCCATATCCGGAGCATGAAACGGCTGTGGATT 2514698 31 100.0 33 ............................... CCTCCGCGAACAATTCTTTCACCGCCTCCGGTA 2514762 31 100.0 34 ............................... CCATCAATGTGGTGCACGTCGTATTCACGTCCAA 2514827 31 100.0 34 ............................... CCGGAAAAAACCGTTCCGCACACTTCCGGCCTCC 2514892 31 100.0 34 ............................... CGTGAAGGGCACGCACATACCCATGTTTGCGGAC 2514957 31 100.0 33 ............................... CGTCGTAAGAATGCAGGTAAGTCTGCTGATTGT 2515021 31 100.0 34 ............................... GTTTTTTGGATGTACAACAACACACCTCCAAGAA 2515086 31 100.0 34 ............................... TAACGTGTGTTTATCGTAAGGCATGAGAGAACTA 2515151 31 100.0 33 ............................... CACATCAAACTGACCGGCAACGCGTACTGGCTG 2515215 31 100.0 35 ............................... TGCGGACAATCCGGCGCACCTGTTCTTTCATCAGG 2515281 31 100.0 34 ............................... CCCGCTTCTTTCTGCGTCGCTTCCGGCCGCGCTC 2515346 31 100.0 34 ............................... TGGGTTGTCCGAATCATCCTCATTGAAGGAAAGG 2515411 31 100.0 34 ............................... AATCCGCATCCGGATCAGGTAGGCCATCCGGATG 2515476 31 100.0 35 ............................... CGGCTCTTCGCTCGGCCAACAAGAACCGCCGAAAC 2515542 31 100.0 34 ............................... ATTGCGTCGCATCAAGCTTTCTCAAAGACATTTT 2515607 31 100.0 34 ............................... CACACGTTACGAAGGAACTCGCCAACACCAGAGT 2515672 31 100.0 34 ............................... TTGACAATGGCAGGAGTTCTGCTATTGTCACCCT 2515737 31 100.0 34 ............................... CACGTTGAGCGTTTCAGAATAGCCCGGCTCACTC 2515802 31 100.0 34 ............................... CGGGCGATAGCCTTGGCCCCCGTATTGATGAGGC 2515867 31 100.0 34 ............................... GTCGCTGGTCAGATGCTGGTTGATGTAGGCCCTA 2515932 31 100.0 34 ............................... TAAAGTCGATTGCCATAATCTTTTGTTTTGGTTA 2515997 31 100.0 33 ............................... AAGCCGGGGAACTGCATGGCCCCGCCATTGTGG 2516061 31 100.0 34 ............................... ACATACAACCAATCATGAACGAAGACAAAATGAA 2516126 31 100.0 34 ............................... CGCAAGGTAACGCGTGTGTATAAAACCCTGCCGG 2516191 31 100.0 34 ............................... CACGTGGAACATTTCAGGCGATTACAGTCTTTTT 2516256 31 100.0 34 ............................... TCCCAATCCTTATCTCGCATTACCTTGAAAGAAC 2516321 31 100.0 34 ............................... CGCCAATACAAGATAGGTACTCCCGCAATGGGGA 2516386 31 100.0 37 ............................... CTTTCAGCTTCTGCTTCAAACGTTCCAGCCGCTCCTC 2516454 31 100.0 34 ............................... CGGCTTTTTCCACCTTGTCCAGCACGGAGGGCAT 2516519 31 100.0 34 ............................... CATTCCGTCCTCCATTTTTGGAGGGGATGAATTG 2516584 31 100.0 34 ............................... CCGTTAAAATCCTGCGTGATTTTATGGCTATCAG 2516649 31 100.0 33 ............................... TCTTACGCTTCCACTTCTTTCCGTGAAAATTTT 2516713 31 100.0 35 ............................... AATGCAAGTCTTTATCTCTTCGGGCCGAACGTTGA 2516779 31 100.0 35 ............................... TCCCGTATAGATAGCTTGAACGACAATCGGAACAT 2516845 31 100.0 33 ............................... TGATAATAAAAAGTATAAATCAGGTTATGACGC 2516909 31 100.0 34 ............................... CAGGTCGGCGAATCCCAGCGGGCGGACCGCGTCA 2516974 31 100.0 34 ............................... TCCGGCTACCGACTGGGACCGGCTGCCGGAAACT 2517039 31 100.0 34 ............................... CCCGTCCAAACTGTACTGCGCTACTGGTCTAACT 2517104 31 100.0 33 ............................... TTTTGCCAAGAGGCAATCCCTGACCATGCGGGA 2517168 31 100.0 33 ............................... GCGTTCGCGGCTGTTGGTAGCCTGCCTGGACGT 2517232 31 100.0 34 ............................... TTTGCTTTTCGCCGTCGTCATCCAGTCCGTCAGC 2517297 31 100.0 34 ............................... GTGAGTGATCGCGTGTTTCGCTCGAATGATTCTA 2517362 31 100.0 33 ............................... TATTCGCTTTTGATTTTCATTTATGTATTTCCC 2517426 31 100.0 34 ............................... GCCCTGGTGGCATGAATAGCTTAAACACTATACA 2517491 31 100.0 34 ............................... CCTGCCCCCACAATCTGCATAACTTCCTCATGTT 2517556 31 100.0 34 ............................... GTTCTTCGCTCATAGCAAAAGTCTGATTTTTAAT 2517621 31 100.0 34 ............................... CGGATGAAGCGTTTGATGCAATCGGGGATGATGC 2517686 31 100.0 34 ............................... TATAATCATTAGCAATTAATCAAAAAAACAAAAG 2517751 31 100.0 33 ............................... TATGAGAAACGTTGAATTATGCGTGGTTGCATG 2517815 31 100.0 33 ............................... TGTTCGCACTAGCTGCGTGTGCCTCCTACATTA 2517879 31 100.0 34 ............................... CATGCAGTCCAGCACTCCCGGCAAGCCCTCTTCG 2517944 31 100.0 35 ............................... TATTCTTGGTGCGATGGACCTGTAGCTTTCAACCT 2518010 31 100.0 33 ............................... TCCGTGTAATATCCCACAAAAGAGAGACAAAGA 2518074 31 100.0 33 ............................... TAACAAGGTCATGCCCCTGTAGGAATGTCTCCT 2518138 31 100.0 34 ............................... GTAAGAATCTCTAACTTGTTCACTCATAGCGCAA 2518203 31 100.0 34 ............................... ATTCTTGGTGCGATGGACCTGTAGCTTTCAACCT 2518268 31 100.0 34 ............................... GACAATACGCACTACATAATGCATACACGATGTG 2518333 31 100.0 34 ............................... TACGTCCCGCCACATGCCAGCAAACACGCGCTTT 2518398 31 100.0 33 ............................... GCCCTTGGACGTCCCCAGGGAAAAACTCTTGTA 2518462 31 100.0 35 ............................... CCGGAAGGAAAGGGGACGAACAAATAAACCTAACC 2518528 31 100.0 35 ............................... TCTTCCCGGAAAACCCGTAACCTCAACTCTATCAG 2518594 31 100.0 35 ............................... ACGTTATTCATTGTTCGTCAAGTATTTGTAGGCCT 2518660 31 100.0 33 ............................... TGTTTCTTCGTAAATCAAGATATGCAGTTTACT 2518724 31 100.0 34 ............................... GTGTGCTCCCTGCTAAATTCTACCTTTGGATTGC 2518789 31 100.0 34 ............................... TTGCTTGTTTCACCGTAGTATTCTTCATACGGCC 2518854 31 100.0 34 ............................... CCGGTACTGTACAGGGGTGATAAAGGTCCACCTG 2518919 31 100.0 34 ............................... AACGGATGCTGATCATTGCTCCCCCGCTGGCTCA 2518984 31 83.9 0 ........C....G........G....C..G | G,C [2519009,2519012] ========== ====== ====== ====== =============================== ===================================== ================== 72 31 99.8 34 GTCGCACCTTCACAGGTGCGTGAATTGAAAC # Left flank : CTCGGAGAAAACGATGCCTCCCTCAAGGACACGGTAACTATTCGCCACCGCGACTCCATGGAACAGGAACGCGTCGCCATCAAGGACTTGCTGCACTGGCTCATTGCCCGTGTGCGTTAACGGCGCCTTTGGCGGCTGCTGATGCCGCAAAACACTTCAAGGCCGCTCCATATTGAATGGAGCGGCTTTTTGTTTTCGGAATGGCAGAGAAGGAAAAAGTTGCTGGACGATAGGCCGCTGACCATCTAGCATTAAAAACAGGTTGGTGAACCAGATGGGAATCAGCAATTCCAAAATGAATGCTGAACCGCTGATCTGTTTGCGCCAACCCCAAGCTCACAGGAATTCCCCGGTAGATCGGCGATTCCTGTAAGTCCTTGAAATCAGCAGATTGACATTCCCTCCAATAAAATATAAGGCGTAAGGAATATGCATCCTGAAAGAGGTTGGCGCAAAAAGCGATTTGTACCACTAACTTTCAACGCATATCCCCTTCCGCC # Right flank : GGGACACGTTTTGGAAGGTTGTCACACTTGCATGGAAATGTAGATGTGAACATCAAACACCAGCCTTACTAAATGGCATTTCATTAAGTATAGGTTGCTGAGGGAGAATGGACTTGGAGCCGACTTTCTTGGAGTAATAAAGAAAAATAATAGTGAAGCTTGCATCTTTAAAAAGGTAGTTTGTGATATAAATAAACCTTCTCTTCAAGAAGAATTTGTTGTTGAAGTATGGCAATAGAATGTTAGGTTTCCGTTGCATTTTGCATCAAGAGAGGGTTAGACGAAATGATTAGAAAGTGTTTGGAGTCGGAATTGGAAACAATTTATGAAATTATCAATGATTCAGCCGTGGTTTATAAAGACAGGATTCCTACCGACAGATGGAAGGAACCTTACATGCCCGTGGATGAATTAAAGGAGCAGATCAGAGATGGCGTGGTGTTCTATTGTTTTGAAGATAAGGGATGCCTTCTTGGCGTCATGGGGATTCAGGACCGGGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTCACAGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.00,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2528018-2529789 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072017.1 Akkermansia muciniphila strain AkkB40 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2528018 33 100.0 34 ................................. CTGAAATTCTTCGGTTTCGTCCACCGTCGGCTGC 2528085 33 100.0 34 ................................. CGTGGACACTACGCGCCTCGCGGCCAGTGCAATG 2528152 33 100.0 34 ................................. TTCATGTCGAAAAAAAATAAGGGAGAGATAAAGG 2528219 33 100.0 34 ................................. ACTTTTTATACACCTGTATAAAAAGCGGAGGGAG 2528286 33 100.0 33 ................................. AAGATACTCAGTTCCATATCAATGGGACGGTTA 2528352 33 100.0 34 ................................. CCCGGTTGAGGTTAAGCCAGCGGTCCCAGGTAGG 2528419 33 100.0 34 ................................. TTCGGAATTGACCTGGACTTGGGCGAGAACGCGA 2528486 33 100.0 33 ................................. ACCGCAACTGCTATCGCAAGCTCATTGAAAAGA 2528552 33 100.0 34 ................................. CCGTTAAAGGTGATCCCCATATTGTTAACGATGA 2528619 33 100.0 34 ................................. GTGAGAATAACCAGATCATGTTCAGCAAGGGAGG 2528686 33 100.0 34 ................................. ACCAACGGCGAGATAGGTACGGTGCAGGTAGTCC 2528753 33 100.0 35 ................................. TACTTTGGAACTGATGTAGACTATGATGTCGTCAT 2528821 33 100.0 33 ................................. TCTACAGGAGCCTGTCATTATGCACGGCCTTGT 2528887 33 100.0 34 ................................. ATCGTAGGGCTTATTGAAGAAAGACTTACAGGAA 2528954 33 100.0 34 ................................. CATTGTGGATTTTTATTGCTAAAATAACCACAAG 2529021 33 100.0 34 ................................. CTATATTGTAACCACTAAGTGCAAGTTGGTAGAG 2529088 33 100.0 34 ................................. CGCCTCAAAGCGGAGGGGGACGTCCCCGGTGGGT 2529155 33 100.0 34 ................................. ATAATTACCGTCCCCATCACATTTGACATTGAGC 2529222 33 100.0 35 ................................. TTCTTCCAATCCGGCTCTGGCCCGGTTCCAGCGTT 2529290 33 100.0 34 ................................. TGTGACTATTTGCTTATATATGAGATAGTCGGTT 2529357 33 100.0 34 ................................. TTTACGATGGATAATAGTGAGTATTGTGTATTAA 2529424 33 100.0 34 ................................. TCATGACACAAGGCAGTCACCTTAGGCTTTTCTG 2529491 33 100.0 34 ................................. CAATGAATCCGCACAGGCGGCGGCCTCCCGGAAG 2529558 33 100.0 33 ................................. ATCATGATGGATAGTAAGCAGGGCAAGAAAGCC 2529624 33 100.0 33 ................................. TGGATATAGGTTTCGTCGATGACATTGCAGGTC 2529690 33 100.0 34 ................................. CGTGAGGATCGCCAGCTTTTCGGCGTCGTTTTTG 2529757 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 27 33 100.0 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTTAGCCATGTATATTCTCATTACTTATGATGTAGCTACGGATGACAAGGCCGGACAGCGGCGGTTGCGTCAAGTTGCCCGCGCCTGTGAAAATATCGGTCAGAGAGTGCAGAATTCCGTGTTTGAATGTGAGCTGGCTCCGGCCCAATTGGTTGACATCAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGCGACAGCCTGAGAATTTATCACATGGGGTCCAATTGGCATCATAAAATAGAGCAATTGGGCAAGGAGAAGAGTTTCGACATTTCCGGCCCTTTGATCATTTAAAAGCTGTCTGAGCACGGCCTTTGCGCCAACCCCAAGCTCACACCAATTTCCCGGGAGATCGGCGATTGGCGTAATACATTGGGAATGGAAGATTGACAGATGAATACTTAGAAGAGAAGGCTAGGTGATGATGGCCTTCTTCGGGAGGTTGGCGCAAAGTATCGTTTGCGCTGTTGAATAACAATGTATATGGTCAGGCGCA # Right flank : CAGCCCCAGGGCATTAGTGGGAATCAACTTGGAATGTCGCCCTCCGCAAGGAGTGCGTAACTCTTCCTAAAAATGAAAAGCTCTCCAGGCTTGTTTGGTCTGGAGAGCTTTTTTTCGGGTTTCGTTGTTTATTTTTCAGCCGGGGGCTGCCGGTTCAGATCGAGTTCTGCGGGAGGGAGGGACTGGAGCAGGGTCAGAATGGGGTCCTGCGGTGCGGCGCCCGCTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGGAGGGCCGCCAGTTTGGTATCTTCCACCAGCGCCTTGAATTTGTCCGCCTGGGAGTATTCTCCATCCGTATCCCGGAAGACGCGGGCCAGCCAGCGGCGTTTTTCTTCCGTGCTGAGCAGGGGCTCTTTCATGGGCTGGGGAGGGTGTTTTTATCCAGCAGGTTTCCTGCAAGCTGTTCCCCATCCGCGGTGGGGCGGTAGACGTAAGGGCGGCTGTCCCCGAAGCGGTTGATGTATCCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.74,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 2931409-2927933 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072017.1 Akkermansia muciniphila strain AkkB40 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 2931408 31 100.0 33 ............................... ATGATGCAAACTACATTGAGGTTAACGCTGAGG 2931344 31 100.0 34 ............................... CTTGGTTGCCGACGGGTTCATCACCGGGTAGCCC 2931279 31 100.0 40 ............................... CTGCACCGGAAAATGGTCAGTACCATAAACGAGGGCGCCA 2931208 31 100.0 34 ............................... CTGCACAGCGGCACGGATAGCCCGGACATCCCGG 2931143 31 100.0 35 ............................... ATAATCAAACCGAGAAGACGCGTTACTGGTGTTTT 2931077 31 100.0 34 ............................... GAGTGCTTGATGTTGTTATTTTTGTTGTAGATGT 2931012 31 100.0 34 ............................... TGGTCCCGCACATACGCATAGAGTTCATGGGCGC 2930947 31 100.0 34 ............................... GTGATTAAAAGTCATAACACAATCCTTTTTAAAT 2930882 31 100.0 34 ............................... ATTTTGGTTGCGGCCAACACCATTGAGGAAAAGA 2930817 31 100.0 34 ............................... CTCGGTGGGAACGGTTTCCAGCCCCAGGCTTTTG 2930752 31 100.0 34 ............................... TGGATAATCTCACGCATGATACTGCTATACTTTT 2930687 31 100.0 33 ............................... TTCCAAATGATGCCAGCTTCCGTCCGGGTTCCG 2930623 31 100.0 34 ............................... CGTTGACCTGTGCGCGGAGCCTCCCGAGGATGCA 2930558 31 100.0 34 ............................... CGTAGTCCCGCATCAGGCGGAACATGGTGCTGGG 2930493 31 100.0 34 ............................... TATTTCCGCTGGTATGCCTTTGCCAGTCTCATGA 2930428 31 100.0 34 ............................... GCCTGCTCTGCGATGAAACCATAGTCGCCCTCAA 2930363 31 100.0 34 ............................... GGTGAAAGAATGAGGGTTACAAGCTCTCCTTCTC 2930298 31 100.0 34 ............................... TGTGCGAAGGAATTCGGAAGCACTTCCAAATAAT 2930233 31 100.0 34 ............................... TCATTTTCAGCTCGACGGGAACCAATATAGGATT 2930168 31 100.0 33 ............................... CGGGTAGGTGAAAAAGTCCCATGTCTTAGGTGC 2930104 31 100.0 33 ............................... TGTTCTTCGTAATATTGTGCAAGTCCGCTACCC 2930040 31 100.0 34 ............................... GTCGAACAGGGCAAGGTGCAAGTGTTCATCTACC 2929975 31 100.0 34 ............................... TCCATGCTGAATTCTACCTTCGGATTGCTGGAAA 2929910 31 100.0 34 ............................... CTTTGCTACTCCTGCGGGCAGGAACCCGGCAAGG 2929845 31 100.0 33 ............................... TATTGGGTTATAGTCAATCATTTTCTTAGTCAA 2929781 31 100.0 34 ............................... CGTTCGTGCTAACCATTGTAAAATCAATCAGTCT 2929716 31 100.0 34 ............................... CGTCCGCTTCCACGTCGGCTAAATGAAAGGCGTA 2929651 31 100.0 33 ............................... TGCAGCGATTGCCGCAGGGCGAGGTTGTTGGCC 2929587 31 100.0 35 ............................... TTTCACGCGCTTCTTCCGGCTTAATATCATAGCAG 2929521 31 100.0 34 ............................... TTCCTCCTGTTCCGTTTCTGCGGTTTCCGCCCCT 2929456 31 100.0 34 ............................... AACGTCCTGCTCAATATCAGAAAGGCACCCCTTG 2929391 31 100.0 35 ............................... AAATGACTAAATTAGTTTTTAACGCATCTGATTCT 2929325 31 100.0 33 ............................... ACCTCACCATCGGAAATAATCGTGTCGGTCAGG 2929261 31 100.0 33 ............................... CCTCCATCAGATCCTCCACCGTCGCGCTTCCGC 2929197 31 100.0 34 ............................... CAGGACCCGGACGGCAGGGATTACCTGTCCACAC 2929132 31 100.0 34 ............................... CCCCGCTTTAACCTTTTTACACAACCTGACAATG 2929067 31 100.0 36 ............................... CAGAAAAAATCACTCCATCCAGGGAGACGGCGTCCC 2929000 31 100.0 34 ............................... CCGGCGCCGCGAGCGGGAAAGGCGTCATTACGCC 2928935 31 100.0 34 ............................... TACGAAATCCTTCGCAATAATCCGGTCCGCAGGA 2928870 31 100.0 34 ............................... CGGACTGCGCAATAACAATCCTGTAGGTAGCGGA 2928805 31 100.0 34 ............................... TCTGCGGAGAGCATCATGCGGCCATATCCGCCGC 2928740 31 100.0 34 ............................... TTGGGAAAGCTGGAGAAGGGTTGGTGACGGTAAA 2928675 31 100.0 34 ............................... AATAACCCATACCCACTGATTCAGATTAATGGAG 2928610 31 100.0 33 ............................... ATCTACCTGGATTTCCGCGAGGTGGTGAAGGAA 2928546 31 100.0 35 ............................... TTTTTCCCTCTTGACTTTCGTCCCTTCTTTTTGCG 2928480 31 100.0 34 ............................... TTCCACGTCCACTTTTTGCGGCTTGCCGTGTCCC 2928415 31 100.0 34 ............................... TGTTATCGGATAATCTGTTTTTAGATATTGGCGC 2928350 31 100.0 33 ............................... CGAAAATGAAAGTCCCCTGGCTTATATGGCCTG 2928286 31 100.0 34 ............................... CTGGTCTGGTAGCAAGGCAGGTTGGTTTGGAATT 2928221 31 100.0 33 ............................... GATAAGCTTGTATTCCGCCAGGGTGATAGCCTG 2928157 31 100.0 33 ............................... CGAAAATGAAAGTCCCCTGGCTTATATGGCCTG 2928093 31 100.0 34 ............................... TTTTCATCACTTCCGCGTCGCCGGAATTGGTGAT 2928028 31 100.0 34 ............................... GGTTCCGGCGGCCCTATCCGTGAAAGCATCTTTA 2927963 31 90.3 0 .....................TA.......G | ========== ====== ====== ====== =============================== ======================================== ================== 54 31 99.8 34 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : GCCGTGAAAATACCGTTGCTGGCCTGCCTGGCCTCCGCCGTCTCCCTGGCGCTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATTATGTAAACCGCGGATATTTTCCGCAGGACGCTTCGGGACCACGGCAGTCCCGGGGCGCCTTTTCTTTTGTGGAAAAGAGAATAAGGCGGTTTCCGGGGAGGGGCCTGCAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATATTCCTGCATCGTGCACAGGCCCTGGTTGCCGGAGATGTGGGCTTTTTAACGCATGAAAAGCGCGTCTCCCGGTCTCCCTTCCGCCAACTCCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTTACGTAATCCGTTGGGGTTCTAATCTTGACAACTATCATCTCTTTTTTACGGCCTGGAATATGTGTGCCTCCATGGGAGGTTGGCGCAAAACACCCGTTGCGCTGTTGATACTCAAGCCATAGGCGTCCAGGCC # Right flank : TCCACATGTCTGCGCGGGGCGCAAGCCGCTCATGCACTGCTTCTTGAAAGAGGAGCAGATCAAAGCTTTATTTTCCGCAACCGTATCGTTTGGTGTTTGGTCTGTTCCCCTGTTATTTTAAGAAAGGACGGTAAGAATCCGTAGTGGAACGGGATGACGGCTCTCTTCCGTTTACCTCTCAGATTGGCATGGTTTGCAGCCTTTTAATGTCCGTCCGCGGCGGGTTGCCGAACATGCGCTTGTATTCCCGGTTGAATTGGGTAGGGCTTTCGTACCCAACGCGGAAGGAGGCGTTTCCTGCGTCCATGTTTTCCACAAGCATCAGGCGGCGGGCCTCATTGAGGCGGATGCGTTTCTGGAATTGAAGCGGGCTGATGGCCGTGAGGGTACGGAAGTGCTGGTGGAAGCTGGACGGGCTCATGCCGGCGCGGCTTGCCAGTTCCCCGATGCTCAACGGCTGGTCGAAGTGCTTTTTTATCCAGTCAATGGCTTTTGCTATC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //