Array 1 22983-25331 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWRY01000131.1 Acidithiobacillus thiooxidans strain DXS-W contig131, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 22983 28 100.0 33 ............................ TAAAAGCACCTTTATAAAGATGAAAAGTGCCCT 23044 28 100.0 33 ............................ ACAAAATCTTGGCTATCTGCAATGAGTGCGTTT 23105 28 100.0 33 ............................ TATTCCTACCCTTATAAATCCAATTGGACAAAA 23166 28 100.0 33 ............................ CCCGCCCCGTCTTGAAGTTCGGGGCCTCTCCTG 23227 28 100.0 33 ............................ TGTTTTTAATCAGGGAAGGATCAACACCTAATA 23288 28 100.0 33 ............................ TTTGCTCCGCCTGCTTTTGTGCTGCCTGCCTTT 23349 28 100.0 33 ............................ CTCCCTGCAAAGTATGGCGCACTTCATCCAGAC 23410 28 100.0 33 ............................ TGAGTCAGCGTGAGATTGCTCATAAGCATAAGG 23471 28 100.0 33 ............................ TCGGCCATTAGCAAGATCAAGCGCAAGATCAGA 23532 28 100.0 33 ............................ TCACTCTGTGCGCCCATTTACCGACCCGCTGCA 23593 28 100.0 33 ............................ CAAGTGGTAGATTATCCAGTTGGCCATGAGGCC 23654 28 100.0 33 ............................ CCAACGGTTACTGCATACTCAACCTCAAATCCC 23715 28 100.0 33 ............................ CTACAAAGACCGTAGTAATGCCGCTGATTGCCT 23776 28 100.0 33 ............................ CCGCAAGTATCGCCGCTTCTTTACGGGTAGCTC 23837 28 96.4 33 ...................A........ CAAGTCATAAATCCTCCTTATACGCTAGCGGCG 23898 28 100.0 33 ............................ CGGCAGCACGTCCGGCTGGAGTTTGCAGATACT 23959 28 100.0 33 ............................ CACTCCAACCCCTGAGAAGCCCCGAGGTGCGGG 24020 28 100.0 33 ............................ CGGCAGCACGTCCGGCTGGAGTTTGCAGATACT 24081 28 100.0 33 ............................ CCCGGATAAAACCGGATTCTTGGCCGGGTTCTG 24142 28 100.0 34 ............................ TTTCAGCATTGGGACTTGCTGCGGTGGCTAGTTA 24204 28 100.0 33 ............................ TAGGGCATATAAATCAGCCTGCCCCTTCCCAAG 24265 28 100.0 33 ............................ TATGATTTATGGCGCGTTTTGCACACTGTTCCG 24326 28 100.0 33 ............................ CGAGGACGAGATCAAAGCCGGCGCACAGGTCAA 24387 28 100.0 33 ............................ TTAGACGCTGGCAAGCGATACTATGCCTATGAA 24448 28 100.0 35 ............................ TACACCGGGTAAAGGGTAAGGGAAGGGGCCAGCAA 24511 28 100.0 33 ............................ TTCGTAAATAACCCGCTGTGGTCTTCCAGTATG 24572 28 100.0 33 ............................ TACCGCTGGCAGCGCATGGACCGCCGAGATTTA 24633 28 100.0 33 ............................ CCCGGCAGATAGTGGCGGCCCGACGAACTACGG 24694 28 100.0 33 ............................ CACCACCACGACTATCAATTTAGGTTCCGGCGC 24755 28 100.0 33 ............................ CACCATCATCGAACCGAGCAACGGACAGGGATA 24816 28 96.4 33 ............G............... TGATCTTGCCCAAGTCTGCCGCAATCCCGATCA 24877 28 100.0 33 ............................ TCCCCCGAGCTAACCACTGCTGCCGTTTAAGCT 24938 28 100.0 33 ............................ TAAAAACGCCCCAACATCAGTCAGGGCGTAACT 24999 28 96.4 33 ..T......................... TACGGGCGTGCCCACGATTATTCGTGACATGAC 25060 28 100.0 33 ............................ CTCTGCGCCGGGCATCTTCGGGCATTGCACAGA 25121 28 100.0 33 ............................ CCCGGATAAGACCGGCTTTCTTGCCGGGTTCTG 25182 28 100.0 33 ............................ TATGGAAGATTCCGTATTCAACACACCAAGTTT 25243 28 100.0 33 ............................ CCATTGATTTCTCCTATCATCCGTTTTGGTCTT 25304 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =================================== ================== 39 28 99.7 33 GTCTTCCCCACGCATGTGGGGGTGTTTC # Left flank : CGCAAGAAATGGCCGGGCAATATAATCGCCAGAAGGTTTCTACAGCCTTTCGGGAGCGTGTCATTCAAGACGACATTCTAGGCAGAATTGGGGCTGACATAGACAAAATTTTAGAGACAAAGAAATGCTCGTTGTGATTGCCAATCATATCCCGCCTGCGGTACGAGGGCGCATGAAACTTTGGTTTGTTGAACCACGTCCCAATGTTTTTGTATCGGGAGTGAATGATGCCGTGGCCAAGAAGATAATCAGCTACTTATACGAGCATTGTCCCTGTTCCAGTGGCCTTATAATTTTCAACAAAACACGGGAAGCTCCTGGTTACAGAATATCTGGATTTGGAGACCCTAAACGCCCACTCATGGAGATTTCTGGTCTTCAACTCATAGCTGAGAAACAGGGAGAAGCTTCTGACCATGAAGAAGGATCTTCCGATGGAAAGTGATTTTGTAAAACGCTACATTTTGTGTTTCAATATTGATCTTTAACAAAATACTGGT # Right flank : CGCTCCGCTCAATCACTCCAATAAATGCAGATACCGGCTACTGGTAGCAATGTTGGCGTGTCCCATGTTTTCCTGCACCTGGCGCAGATCCATGCCCTTGGCCAGCCACGCGCTTGCTGCCGTATGCCGGAGTAAGTGCGGGCCGCATTGGGGCTTTTCGATTCCTGACCGGATGAGCAATCGGGATACCATCGTATGCAAGGCCTTGGCGGGAATGGCTTTGCCCTGGTCGGTTACGAACAGTGCATCGGTTTCCGGATGGGAACGATGACGGATCTGCAGCCAGTTCCGCATCGCCTCGACGCCTTCCGGCTGGAATCGCACCAGTCGTTCCTTGTTGCCTTTCCCGACCAGGCGGATCCGCCCTTCAAAATACTCGCCAGCATCCTTGATGGTCATGGCTACCACTTCAGACGCTCTAAGCCCGGTATCGAGAATAAAGCGGATCAGTGCCTTGTCGCGCATGGCGGCATAGGAAGTACCCAGATCTATGTGCGTAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCATGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //