Array 1 162975-161846 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZIF010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 641 NODE_2_length_652954_cov_36.3017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 162974 29 100.0 32 ............................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 162913 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 162852 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 162791 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 162730 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 162669 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 162608 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 162547 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 162486 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 162425 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 162364 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 162303 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 162242 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 162180 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 162119 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 162058 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 161997 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161936 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 161875 29 96.6 0 A............................ | A [161848] ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181027-179107 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZIF010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 641 NODE_2_length_652954_cov_36.3017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181026 29 100.0 32 ............................. TACGCCCCGTTTTTCTCAGCGACCTCACACGA 180965 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 180904 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 180843 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 180782 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 180721 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 180660 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 180599 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 180538 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 180477 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 180416 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 180355 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 180294 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 180233 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180172 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180111 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 180050 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 179989 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 179928 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 179867 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 179806 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 179745 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 179684 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 179622 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 179561 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 179500 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 179439 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 179378 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 179317 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 179256 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 179195 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 179134 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //