Array 1 9307-7298 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHANW010000015.1 Vibrio cholerae strain C19F.3 Scaffold15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9306 28 100.0 32 ............................ TTACTATTTAATGAGTCCTAAGTACCAATCGA 9246 28 100.0 32 ............................ TGTCGTCATGGGGCGCTCTTGAGTGCCATAAG 9186 28 100.0 32 ............................ GTTCGGTAGCTGGCGTTCTGCCCATTCGATCA 9126 28 100.0 32 ............................ AAGCCATTGCAGCCCGAGAAAAAATCCAGCTT 9066 28 100.0 32 ............................ AGAAGGGTGACATTTGTGAATCGTTGGATAAC 9006 28 100.0 32 ............................ TCTGCCAACCATTAATAAACTCTTCATCTACT 8946 28 100.0 32 ............................ ATACCTGTAAATTCCAACCCAGCACCATACCG 8886 28 100.0 32 ............................ ACGCGGGTCTTTACAGTGCGGGCGGAAATGCA 8826 28 100.0 32 ............................ GCTAGTGCCATTGCCGCGATCCCACGCTTCGC 8766 28 100.0 32 ............................ AGCAACCAAGCAAAGTGATTCTTCTTTGTTGA 8706 28 100.0 32 ............................ AATATGGAGCATGAATACGCCAAGGATATTGG 8646 28 100.0 32 ............................ AGTTTGCAAAAACTATCGGCATTGGCCCTAAC 8586 28 100.0 32 ............................ TGACTTAGGCCACTTTTGACGACTTGCACCGG 8526 28 100.0 32 ............................ CAGAATCTACTTTTTTCACCTTGACCAACTAG 8466 28 100.0 32 ............................ ATAGAAAGAGAGGTTAACAAAGGCAACGTTGA 8406 28 100.0 32 ............................ CAAAGGATCACGTTTTTCTCAGCGACTTGCCT 8346 28 100.0 32 ............................ ATGTTTTTTATGTTTGGGGATCCTGTTCGCCA 8286 28 100.0 32 ............................ ATATTGGCGCCTTTAGAGTTCTCCCAACCTTT 8226 28 100.0 32 ............................ GTTTGCTGAAATCATCGAAGCAGTTGAAGAAA 8166 28 100.0 32 ............................ TACTGGCGAGATATCCACATGAGCAAACCGAG 8106 28 100.0 32 ............................ ACCGTGCGCATCAGCAGAAAGAAACGAAACAT 8046 28 100.0 32 ............................ CGTGTAATCGACACCCGTCAAAGCGATAACAG 7986 28 100.0 32 ............................ GATCACGTTTGCTTTGGTTGTGTTCTCGTCTT 7926 28 100.0 32 ............................ TTTAGGGCGGGGCTGCATAGCAGGGCAAGTGG 7866 28 100.0 32 ............................ ATCCTAAAGGCACCTTGCCTGCTAACGTGGGC 7806 28 100.0 32 ............................ TGGCGACCATGTGTTATATGATCTCTTTGATT 7746 28 100.0 32 ............................ TGTCACGCTCTCAACGTAGTTCTTGGTAATGA 7686 28 100.0 32 ............................ AATAGGGGAAAATGAATGAAATACGCACAAGG 7626 28 100.0 32 ............................ TTTATTACCAGTCTTGGCAGGCTGTCCAGCTC 7566 28 100.0 32 ............................ GCGCTCCCACTTTGCTATGGTCTGCTGTGTAA 7506 28 100.0 32 ............................ AGATCGACACAGTAGTTGATTCGGTCAACTTG 7446 28 96.4 33 ...........T................ AGCACAAACCGCCGCTGATCACTTGGCGATTCA 7385 28 96.4 32 ...........T................ CGTAGGCTGGTTTATGCAGGCTTTTGGGCTGG 7325 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 34 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCATTGTGCGCTTTGCCGTTTATTTACTTGTATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAGAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACATTCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : TCTGCTTTCCCCATCATATGGGTTATCTATGTGATGGGGATTCGCTCGCTAGCGGCCTGCCTGTGAATCCAAGTGGTATGTGTCTGGTACGCAAGGTTTTTCTGTACCCCAAGCTGTGCCCAGAGCGATTGGTTTATAAAGGAAATCCTGTTGATCTCCTTATCTAATGCGCTCTAGCATCACACCTGCTTCCATATGGTGGGTGTAAGGGAATTGGTCGAAGAGAGCAAAACGCACCACTTGATGGGTTTCCCCCAAGACTTGTAAATTCTCTTGCAGCGTTTCTGGGTTACAAGAGATGTAGATAATGCGCTCATAACCTTGCACCATTTTACAGGTGTCGATATCCATGCCAGAGCGTGGTGGGTCGACAAAAATAGTGTTGCAGCGGTAGCTTTGTAGATCGACTCCCGCATCCTTCAAGCGATTGAATTCGCGTTTACCTTCCATCGCCTGAGTAAACTCTTCTGCTGACATGCGAATGATCTGCACGTTGCCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //