Array 1 67314-70571 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNSL010000006.1 Lactobacillus delbrueckii subsp. bulgaricus strain CIRM BIA 1579 CIRM_BIA1579-i1-1_scf6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================================================================================================== ================== 67314 28 100.0 33 ............................ TGATTTGGCATTCTGGACTGGCAAGGACCCAGA 67375 28 100.0 33 ............................ TGATGTTATTTCTGAATATGTGTTTTAATTTGA 67436 28 100.0 33 ............................ CCAGCGCAATTCCGCCAGCGTCTACCTGGTCAA 67497 28 100.0 33 ............................ TTGAAGACCCAAGAGTAAGACAGCTATTGGAAA 67558 28 100.0 33 ............................ CTTCATTTTCTTAGGCTTTCCTATTGGGTAGGT 67619 28 100.0 33 ............................ TGCAAGCCTTTGGCAAGCCTTTTTTATATTTTT 67680 28 100.0 33 ............................ TTATGAACAACTGTTTGCATGGTTAGCCTATGT 67741 28 100.0 33 ............................ TATCTATTTGACGAACAACATCGATATTTTCGG 67802 28 100.0 33 ............................ TCATCAGAGCAGGCCTCTACAACTATGAGGTTG 67863 28 100.0 33 ............................ TAATAATGCTGTTGGTCAACGGGGAGTAGCCTA 67924 28 100.0 33 ............................ TGACTCCTTCTTTTTCTTCTTCGGTCAAGTCGA 67985 28 100.0 33 ............................ CATGTTTCCGTTGGAAATACAAGACTTTTTAGA 68046 28 100.0 33 ............................ TCATCGCTTTCCTAGACAAACCGCACTGCACTA 68107 28 100.0 33 ............................ CAGGGTGGTGAACTTGCGCACTTCGATCACACA 68168 28 100.0 33 ............................ TGGAAAGCGAAGCGTTCGCCGAAGAGCTAAAGG 68229 28 100.0 33 ............................ CACCTTTCCGTCGGTAGTGCAAGCCTTTGGCAA 68290 28 100.0 33 ............................ TCTTTGCTTGAAGATTATCCACACTATGATGAA 68351 28 100.0 33 ............................ CGATGAGGAGGTCCGGGACGAAATTGCGGCCGC 68412 28 100.0 33 ............................ CCCGGCCGCACGGGGCTACGGAATTATTACAGA 68473 28 100.0 33 ............................ TAAAAGACTTCACAGAACTGTATCTTCTTGCAC 68534 28 100.0 33 ............................ CCCGTCCCAAATGAATTCGCCAATTTCACGCGT 68595 28 100.0 34 ............................ TTTAAAGACTACGTTACCCGCGAAATTGGAAACT 68657 28 100.0 33 ............................ CCACGGGGACGACTTCGGGGAATGGACTTCAGA 68718 28 100.0 33 ............................ CGAGTATAATTAAGAGCGTAAGGAAAAAGCCCA 68779 28 100.0 33 ............................ CAATCTGCCCATTAACTACCTGCGCAATGGTCG 68840 28 100.0 33 ............................ TCGCCGTCTGAGAAGCCATCGCCATTCATTTCA 68901 28 100.0 33 ............................ TGACTGGCTATCCTCTCTGGTTGGTCCTAAAGG 68962 28 100.0 33 ............................ TTAACCAGCAACAGAAGGCCCAGGCGGCCGTTA 69023 28 100.0 33 ............................ TACTTAGGTAAGCCTATTGAAGGGCCTGTTAAA 69084 28 100.0 33 ............................ CTGGAAGCTGGAAGCATGATCCAGTTGGAACTG 69145 28 100.0 33 ............................ CATGCTTTAAGTTTGATAAAGGCATCGATTACT 69206 28 100.0 33 ............................ TGGGCAGATTGTTGCGGCGATTAATACGAATTC 69267 28 100.0 33 ............................ CTATGACATGCACGATTATCGCATGCTTTACTG 69328 28 100.0 33 ............................ TCAAAGCCGTACTGCGTCAAATCAATCCGATAA 69389 28 100.0 33 ............................ CCACGGCGACGACTTCGGCAACTGGACTTCGGA 69450 28 100.0 33 ............................ TCTACAAGCCTTTTTATTTAAGGAGCAGTCATG 69511 28 100.0 33 ............................ TAATGACTACTGAACAAGAATTTAAGAAAAACT 69572 28 100.0 33 ............................ TTAAGATCCCCAGCAAGTAAGATTTTTAGATAA 69633 28 100.0 33 ............................ TTTTCTTGCGCATGAGAGAGCTGACACTCCAGG 69694 28 100.0 33 ............................ TAAACGCCGGGCGCAAAATTCCCTATAGCGTCA 69755 28 100.0 33 ............................ TGAGCCAACCTACGCAAAGTCCGGACTGACTGG 69816 28 100.0 33 ............................ TTTGGTTTAATAGCAATGCTTGATTGTTTGCGG 69877 28 100.0 33 ............................ TTGCATTCTAGCAAGAAAAATATTTGCGTCGGT 69938 28 100.0 33 ............................ TAGTGAATTGGATTTTTGGCGGGTCGGTTTTGA 69999 28 100.0 33 ............................ TTCCGGACAAACTCCGGACAAATTGGGCTGAAA 70060 28 100.0 33 ............................ TTAGGCAAGATGCCCCGTAAAAATTGCCGTCAG 70121 28 100.0 33 ............................ CGGCCTTGACGGCTTCGCAACTGTTACCGTCAA 70182 28 100.0 33 ............................ TTTCTGCTATGAATCCGGTTTGACCGACTAAAA 70243 28 100.0 33 ............................ CTTACGGTAGATCAGACGATACTGACAGCCAGG 70304 28 96.4 33 ..................A......... TGTTCTTGCCCAGAATGATAAACTCCTGCCCGA 70365 28 100.0 150 ............................ TGGGGGGCGTAGTACACCCCACTGTTATAGATCTATTTTACTTAATCGGCTGTGATCTCACTGCCATTAGTGAGTAACATGGGGCGAAACAATATTCCTCACGTATGTGAGGAGAATTCTTTCTTTATGCTATTGTGTTTTTCGTACTGT 70543 28 78.6 0 ...........AT.T.C....A.....A | T [70549] ========== ====== ====== ====== ============================ ====================================================================================================================================================== ================== 52 28 99.5 35 GTATTCCCCACGCAAGTGGGGGTGATCC # Left flank : GGACTGAATACCGAAACTGATCAGATTTTGTCTATTGGCGCGGTGAAACACGATGGTACAGAATTCTACCGACTGATCAAGCAAGATATTGATGTGCCAAAACAGATAGTGGAGCTGACCGGGATCACTTCTGAAATGCTAAGTAAGGAATGCGTTCCATTGCAAGATGCATTGGAAGAACTGACTGACTTTGTTGGAAATGTACCAATTGTTGGGTACAATTTTAGATTTGATTCTGCATTTTTGAATAGGGATTATCGGAAATGCGGGATGCAAGAATTGAAAAATGAGATCAAGGATTTACTGCCAGTTGTAAAAAGAAAAGAAAAATTTCTGGACAACTATAAGCTACAGACTGTATTATCAAACTACGGGATCGAAAATAAGGTGCCGCATAACGCTGTGTCTGATGCGAGGGCTACGAAGGAGCTGGCGATGAAACTAATCAAAAATCGCATTCTGGTGATTTGAGAATGGCGTCGCTAAAGGGATCCATTACT # Right flank : ATAAGTTTCAGTTAAAGCACAAGCAAATTTCAAGGATCTTTGATAGAGTAGAGGTAATAGAGAAGGAGTGAGGAACAAACATGAGCATTTACGGTAAGTACGCCGATTATCTTCCACAGATCCTGGATTCTGTTTTGCAGCAAATCCAAGGCATCGGTCAGGAGTATAGTGAAAAACACGGGCAAAAGCTATATGGGCACCTGGAAGGTCGCGTCAAAAGCGAAGAAAGCATGGCGCAAAAGTGCGAGAGAAAAGGTTTGCCGCTGACGACAGAGTCTGCATTGATCGAAAACCGGGATGCGATCGGCCTCAGAATCGTCTGCAACTTTATTGACGATATCTACACTTGCATTGACTTGTTGAAGAAGCAGGACAACTTCAAGATCATTAATGAAAAAGACTACATTACCGATGCCAAGCCAAACGGCTACCGGTCATACCACTTGATCATGGAAGTAGTCACTCCCTTTGAAGACGTCCATGGCAACAAGCCTGGCACC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCAAGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.30,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //