Array 1 22756-22189 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXLE01000019.1 Enterococcus thailandicus strain DSM 21767 Scaffold19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 22755 36 100.0 30 .................................... TTGCGTTAACTCTTCATGTTCATCAAAAAC 22689 36 100.0 30 .................................... TCTTATTTTCTGTTTCTGTGACTGTATTTA 22623 36 100.0 31 .................................... AGTTAACTATTATAGAAACCAGTTTATTTAT 22556 36 100.0 30 .................................... GGATGGGACTTTAGGAAAACCAATTGACCA 22490 36 100.0 31 .................................... TTATACGGACTTGCACGAAACCGATTCTTAA 22423 36 100.0 30 .................................... GGATGGGACTTTAGGAAAACCAATTGACCA 22357 36 100.0 31 .................................... TTATACGGACTTGCACGAAACCGATTCTTAA 22290 36 100.0 30 .................................... AGATGTTGTATTAGATAATTGTATGGGTAG 22224 36 91.7 0 ............C............A.......C.. | ========== ====== ====== ====== ==================================== =============================== ================== 9 36 99.1 30 GTTTTAGAGCTATGTTGTTTAGAATGCTTCCAAAAC # Left flank : TGCAAATCCTTACTTGGCAATGGCCGTATTATTGCAAGCCGGTTTAGATGGTATCCGTCGTGAATTAACACCGCCAGATGCGGTTGACCGTAATATTTATGTGATGAATGAAGAAGAACGTGAAGCAGCGCAAATTCAAGATTTACCTTCAACGATTCACAACGCAATTAAAGAATTGCGTAAAGATGAAGTGATGATCGATGCACTAGGTCAACACATCTTCTCAAACTTTGTTGAAGCGAAACGTTTGGAATGGGCAGCTTTCCGTCAAACAGTTTCTGAGTGGGAAAGAGAACAATATTTAGAACTTTATTAAGTCAAAAAAGTAGTAAACACAGAGGCAATCTTTTGTCTCTGTGTTTTTTCATCCATTATGTTTTGTTTCCCACAGGTTTATTTTCCCATGATATAATAAGAAAAAACAATTGTTGAAGTACTTTAACTGAAGTTTTGCTATGGACGAGTAGTGCGATTACGAAACCTTGAATTTTTTTGCGAGG # Right flank : CAACAAATTTTTTTGAAATCGCAATCATCAAATTGATGTCTTGACTTTCAATTCTGGAGCTTGTATTATACTCCTTGGGCACCCTTTTAAAGGGTCAGAAGTTTACAGAAATTTCAGCTCCCTATTCTTGTTAGAAGAATAGGGAGCTTTCTTTATTTTTTCTGGGACTTTTCCTGCAGATAAAACAAGAAGGAGTTTTTGAATTTATGACAAAATACATTTTTGTAACTGGCGGCGTTGTATCTTCGATTGGTAAAGGGATCGTAGCAGCTTCATTGGGTCGCTTGTTGAAAAATCGTGGCCTAAAGGTAACTATCCAAAAATTTGATCCGTATATCAATGTTGACCCAGGAACAATGAGTCCTTATCAACATGGAGAAGTATTTGTAACAGATGATGGTGCGGAAACAGACTTAGACTTAGGACACTATGAACGTTTTATCGACATCAATTTGAACAAATACTCCAATGTTACCACAGGAAAAATCTATTCTGAAGTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTAGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 20573-21267 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXLE01000002.1 Enterococcus thailandicus strain DSM 21767 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 20573 36 100.0 30 .................................... TACGGAAGACTGGATTCGAACCAGAGATAT 20639 36 100.0 30 .................................... GCTTTTTAGTCGTCTAAATGAAAAGCTTAC 20705 36 100.0 30 .................................... TACGGAAGACTGGATTCGAACCAGAGATAT 20771 36 100.0 30 .................................... GCTTTTTAGTCGTCTAAATGAAAAGCTTAC 20837 36 100.0 30 .................................... TATTTGTCATTGAACTTCTCTTACGTTCCT 20903 36 100.0 30 .................................... GGGAGGTTTTATCAAAACAAACTTCCTATT 20969 36 100.0 30 .................................... ATATATGTTTTTCCTACTGTGAATACATTT 21035 36 100.0 30 .................................... TATCTTGTTTACATCTATTATAATAGCATG 21101 36 100.0 29 .................................... CTTTCATTTTTCCGATAATGTCATTTGCT 21166 36 100.0 30 .................................... TTACAAGTTGAATGGTTGGCTAATTGGATT 21232 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 100.0 30 GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Left flank : TATATTTTTTCTTGTTGTGCGTATGACTAAAGCCAATAACACTGACAAAAAAGAAAATTGTTGCGACAGGTCTACCAAACCAGTCTAGCCAGTTAGGTGCTCCAAATGGAACAAACATCTGATGGATATGATCAATAAACATTAAGACAATGCCTAACATTTTTAAATCAAATGTTGATAGGCCTTTTTTGGGTGTATCAATCGTCAAAAATAATTCCTCCTAACTAATAATAACTATATGTTAACAATATGATTGATTGAAAGGCTAGTGAAATAATATAGAACGAGCGAACAATTTTGTCACAAGAGATTTTTTTGTTATCGATCATATACTGGTCTTTATGAGGAAAGAGTTGGGTAGTTGGGGTAGTGAATTCATGGTATACTAATAAAAAAGATCCTTGAAATCTAAATAAATAGATACCAATAGAAGCATCCAAACTGAAGCCTTGCTATGGGCAAATAGTGCGAGTACGGAACCTCAAAAATTTTGAGCCGAG # Right flank : CAATAGAAAAGAAGGTTTTTCAATGCTCTACCTGTGTATATTTAGGGTATACTCAAAATATACGATAATGTTCTATTTATTGATAATTATCTTCCTTAATTTTGAAATGGCAGAAATCGATATCAATGAGAGGATAGATTTTTTCTTAATCCTAAAAAAATTGAACAACAATTTCCGGAGTTTTTTAAAATCTCTGAGTTGTACTATTTGAAGGGAAAAATATGTTGGATACTAGAGAGTATGAGCTAAAGCTGCAGCAGCCGTAGATTTTCCTTGTAAAAAGGTTATTAAAGGTTTAAAAAGAACGCTTGAAAGAAATTGGAATACCAGTTCCAGAAATATATCAAGATAAAATAAAAAAGATGTAGCCGAACAAATGCTTTGAAGAGGGTATAAATCCTGAAGATTATTAGGCTATAAGATTATATAGTTAAATATTAAATGTTATTTTTTGTGAGTGTACATACTTAATAAACCTTGTTTTTTAGCGTGTTTAGGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 33239-34132 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXLE01000002.1 Enterococcus thailandicus strain DSM 21767 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 33239 36 100.0 30 .................................... TGATTTTGATACCCTCCCACATCAAACCAA 33305 36 100.0 30 .................................... TGAAGCTAACAATATCTGAATGACTTTATT 33371 36 100.0 30 .................................... ATATAAATTAGAAGAGTCTTATTTAACTAC 33437 36 100.0 30 .................................... CAAAAGGCGATACGCACGATTGGGAAGACA 33503 36 100.0 30 .................................... TATGATGTTCGCTTTGAAAAAGATACCTAT 33569 36 100.0 30 .................................... TATATTCAAAACAATCATCCAAACTCGCGC 33635 36 100.0 30 .................................... CAGCCAAAAGGACAATTACGTATCGCAGGT 33701 36 100.0 30 .................................... GCAATCTGCACGAATGAAGGCATACAAATT 33767 36 100.0 30 .................................... TGAGATGTTCGCTTTGAAAAAGATACCTAT 33833 36 100.0 30 .................................... TATATTCAAAACAATCATCCAAACTCGCGC 33899 36 100.0 30 .................................... CAGCCAAAAGGACAATTACGTATCGCAGGT 33965 36 100.0 30 .................................... GCAATCTGCACGAATGAAGGCATACAAATT 34031 36 100.0 30 .................................... TGAACTAATATGTACTGCCCCTCAATATTG 34097 36 83.3 0 .............................A.TTTTG | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 98.8 30 GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Left flank : TCTGTTCAACTATTTTTCGATCCAACGACCCATCAAATTTTGGGTGGAGCTGTGTTATCAACTTATGATATTACTGCTCAAGGAAATGTGTTAGCTTTAGCAATCCAACAAAAATTAACACTAGAAGATTTAGCTGAGGCAGACTTTTTCTTCCAACCAGGATTTGACCGTCAATGGAGTCTGTTGAACCTAGCAGCACAACATGCTTTAGCTGAAAAAGAATTTATTGAATAAAGCGAAAATTGAATCAACCTCCAAAAGTAGTCAAATGGACAGGCTTTTGGAGGTTGATTTTTTCATTTACAATCAAATGATAGCCAGTATAGTGAAAAGCTTATTGTTTTCCAACTATTTTCGTTGCAAACAAGGTTTCATGCTATACTAAAGAAAAGTGTTCCTTGAAATAAGAATAACCAATGACGTTAACGAAGAAGCATTCAAACTGGAGTCTTGCTATGGGCGAATAGTGCGATTACGGAACCTCAAAAATTTGAACCGAG # Right flank : GACTGAAACTGTCATTGTTTTAGTATGTGTTTATAAAAAGTAGCAGAAAGAATACGTGATATTGACTCAAGAATAACTGATGATAATTTGCAGTAAAAAAGAACGCAGTTTCATGTAGTTCCTTAAAAGTAGGGAGCTATTCATGAAACTGCGTTTTTTTGATACCTAATTTAATTAACGAATAGTACCTAGAAACATTTCAAAATTTTGCGTATCAGCTATTTTTTGTTGTAGTTTTCGGTCTTCTACAAGATCAGATAAATACTCAAAAAAAGCTTGGAGTTTGTCTTTGTCATCTTCAGCAACGGCAAGTAAAAAGATGATTTTTACGGTTGCATTCGGACGCCAAAAAATCGGTTCTTTTGAGATGTAAACAAAAATTTTTGTTTTCTGGATGGAGGCATCAATAGCATGAGGGATTGCGATCAACTCAGTGATATTTGTTGGTGCAATTTCTTCTCGATCAATCACTTTTTCAATAAAATCTTCAGCGACAATGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 100488-101153 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXLE01000004.1 Enterococcus thailandicus strain DSM 21767 Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 100488 36 100.0 30 .................................... AAAAAGAACTAGAAGAAATTATTCAGTCAA 100554 36 83.3 0 .............................NGCCG.G - Deletion [100590] 100590 36 100.0 30 .................................... AAAAAGAACTAGAAGAAATTATTCAGTCAA 100656 36 100.0 30 .................................... TACGTTCCATTTTCAAACGCAATTATATTT 100722 36 100.0 30 .................................... CGTTATGAGGTAACAGATACTATTCTAGAC 100788 36 100.0 30 .................................... TACAGACATTGCAGGCGGAGAAGCATTACT 100854 36 100.0 30 .................................... AGAATTAGATAATGTAGAAAGTATTTGTTA 100920 36 100.0 30 .................................... TGTGTCGTTGATAACATTTTCTTGAATGTG 100986 36 100.0 30 .................................... TAAAGTTTGTTTTCAACAATGGGGTTACAA 101052 36 100.0 30 .................................... TGCAGATAAATTTTTTACAGCTACTTTGGA 101118 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 98.5 27 GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC # Left flank : CAGAAATCAAAACCAAAATTGATCGTTTGTCGATGGAAATTGCCAAAGTGATGCAACACGAATTGTTAGAACATGCGCTAGATCTTGAAGAAGATGAGTTGACCCTCATGGAGATATTTAAGTGCTTAGGAATACGGATTGAAACGAAAAGTGATACCATTTTAGAAAAAATGATTGAAGTAATCCAAGTATATCGTTATCTAGTGAAAAAGAAGCTATTGGTATTCGTGAATGCTTGTTCTTATTTAACCACGACAGAATTACAAACATTAATTGACCATATTTCTTTATACAATGTAGATGTATTATTTTTAGAACCTCGACCAATTGAGGGTGTTGCACAACAAATTCTAGACCAAGATTATTTTTTGACAAGAAGATAACAGATAGGACTAATTTTTTCGTTCTTTGACAAGTAAATCAAACCAATGAAGCATTCAGGCTAAAGCCTTGCTATGGGCGAATAGTGCGATTACGGAACCTCAAAAATTTGAGCCGAG # Right flank : CGACTATTTTGAAAGTAGTTCATAATCCACTGTTTTAGAGCTATGCTGTTTGACGGACAAACTCATCTGTTTCTGAAAGCAAGCAGTATACATTCATACGATCAAATAAAAAAAGATGTAACAAATGGAAAAATAACAATGATTGAAGATGCAAAAAATTTTGAAGGAAATCCAGTGGTGAGGGTTATAGCACAAACAAGTAAAGAAGATGTCGGAAAGAGTGACACGCTAGGACGAAGCGATTTCCAGTTCCTAGGTGCTAATACTGAATGATTTACACCGCTACTTAGCAAATAGATAGGCAAAAAAAGTGTAAAGGAAGTATTTATGAAAAAGGTTGTTGTTACACTCATAATAATAACTATCCTTGTCGTAGGGTTTCTTTTCGTAGGCGCTAAACGTACAGAAAATCTACTACAAAATAAGGTTGAAAGTACCACTACAAGTGATGAAGAGGCAAATGACAGTTCAATCCAGTTCAAAATTATTGATTCAAATAA # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.29, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //