Array 1 3731586-3733053 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBLI010000001.1 Pseudomonas aeruginosa strain S103 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3731586 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 3731646 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 3731706 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 3731766 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 3731826 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 3731886 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 3731946 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 3732006 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 3732066 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 3732126 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 3732186 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 3732246 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 3732306 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 3732366 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 3732426 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 3732486 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 3732546 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 3732606 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 3732666 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 3732726 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 3732786 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 3732846 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 3732906 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 3732966 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 3733026 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 25 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3742866-3741578 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBLI010000001.1 Pseudomonas aeruginosa strain S103 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3742865 28 100.0 32 ............................ CTTCTCCGAGCAGGCGCAGCGGTTGAAATGAA 3742805 28 100.0 32 ............................ AGCGGGCGGTGGGCGGCATGAAGAAAACACCC 3742745 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 3742685 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 3742625 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 3742565 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 3742505 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 3742445 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 3742385 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 3742325 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 3742265 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 3742205 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 3742145 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 3742085 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 3742025 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 3741965 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 3741905 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 3741845 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 3741785 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 3741725 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 3741665 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 3741605 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 22 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //