Array 1 1943542-1943180 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046908.1 Stappia indica strain PHM037 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1943541 32 100.0 34 ................................ CTTGACGCCCCAATCCATCCCCGATGGCGTCCCG 1943475 32 100.0 34 ................................ CGCCTTCGTGACATCCGCAGACGAGGGCCGGAAC 1943409 32 100.0 34 ................................ TTTGCGGCCTTCACCAAGCACCGCCGCCCGAATT 1943343 32 100.0 33 ................................ GGGATGCGGTCGAAGCGGAGCGGGAGGCCTGTG 1943278 32 100.0 35 ................................ TTTCGAAGGCGCGCTTCCAGCCACGGCAACAAGCT 1943211 32 96.9 0 .....................T.......... | ========== ====== ====== ====== ================================ =================================== ================== 6 32 99.5 34 GTCGCCCCCCTCGCGGGGGCGCGGATCGAAAC # Left flank : CTGGTTCTGGAAATAGGAGCGCGCCATGCTGGTTCTCGTGACATACGATGTCAGCACCGTCAGCGAGGGCGGGACCGGGCGGCTGCGGCGGGTGGCGCGCGCCTGCCAGGACTATGGCCAGCGGGTGCAGAACTCCGTCTTCGAGGTCGAGGTCGATCCGGCCCTGTGGACCAAGCTCAAGGCGCGGCTGGAGAGCATCATCGACCCGCGCAGCGACAGCCTGCGCTACTATCATCTGGGCTCCAACTGGCAGCGGCGGGTGGAGCATGTGGGGGCAAAGCCGGCAGCGGATCTCAACGGGCCGCTGATCGTCTAGTCGCCTGTGCGAACCTGAAGCGTGCCGAAAAAACCCGGCAGGTTCGCGCGGGAAACAGCTCATTGAAATTGTTAATCTTTTTTGAGGAGCAGCGAGCTGCTGGCGCGGCTGCGGGATGCGGCGCCTTGCAGTTCGCGCCGGAGCTCGGGTTTCTTCTGTAAAAACCGCATGATACGAGCAGCCA # Right flank : ATGCGTCACTTCGGAGAGTTGGTGCTGGAGGCCTGTAACCGCCATCGTCTTTCCGTGCTGCCCGGTCACGTCCCGGTTGCGTTCTTGGGCGTTATGCTGCCTGTCCTGCTTGTGCTATCTGTTGAGGATAAATAGACACAAAACGACATAAAACTCCGGGGGAGGGAGATCATGGGCACGGGATCGCTCAGACGCTTGACAGATGCGTCCGTCGATGCGGAGTTCGGGCCATGGCTGTCGCAGGCTGCGATCCTCGTCGTCGACGACGAGCCCGGCATGCGCAATTTCCTGGTGCGGACGCTGGCGCCGCATTGCAAGCATATCGCGGAGGCGGAGGATGCCGCCGCCGCTTCGGTGCTGCTCGACCGGCATCACTTCGATGTGGTGATCCTCGACAATATCATGCCCGGCAAGACGGGCGTGGAATGGCTCGCCGAACAGCGAGAGATCGGTTTCTTCGCCCATGCGATCCTGATGACCGCCTATGCGGACCTGGAAAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCTCGCGGGGGCGCGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCCCTCGCGGGGGCGCGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.00,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 4347189-4348018 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046908.1 Stappia indica strain PHM037 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================= ================== 4347189 32 100.0 34 ................................ TGGTACGAGCCGGGCAGCTCTGTGGCGCTGTCCT 4347255 32 100.0 45 ................................ GCACGTATGCGAATGACAATGTCGCGCCGGCTCGAGGTGCGCAGC 4347332 32 100.0 33 ................................ AAGTTCGCATATTGCCGCGTGCATCGCCGCAGA 4347397 32 100.0 33 ................................ CGCGCTCCGTAGGACTTGCCGCCGTTGGCGTGC 4347462 32 100.0 34 ................................ TTGAAGTGCACCGCGCCCTTCTTTTGCAGCTCGT 4347528 32 100.0 33 ................................ CAGCGCGGCAGCTGCCGGCAGGCGGCTTCCAGG 4347593 31 96.9 33 .........-...................... GCCTCGTCGTGTGGGTGGTGCCGCCGGCAGCGG 4347657 32 96.9 34 .....................T.......... TGGCGCGGCTTCGCCGGCTATGACGTTCGCGCGC 4347723 32 93.8 34 ........T............T.......... GACGCGGCCGCGCAAGCCTGGGTGGCAGCGCAGC 4347789 32 96.9 33 ........T....................... CAGCGCTCGACTCGCCGCGTGTAGACCTCGCTC 4347854 32 96.9 34 ...................T............ TATGCCGAGGCTGCGACGGTTGGGATCTTCCATC 4347920 32 87.5 36 .C....T.....A........T.......... CAGAACCGGGTGCCGGTGGCCTTCACGAAAGGCAGG 4347988 31 96.9 0 ..............-................. | ========== ====== ====== ====== ================================ ============================================= ================== 13 32 97.4 35 GTCGCCCCCTTCGCGGGGGCGCGGATCGAAAC # Left flank : CCGGCGGGGCGAACCTGCTGCTGCGCGGGAACGAGCTCGGGCGGCTCCAGCCCGGTTACCTCGCCGACATCGTCGGCTTCCCCGGCGACATCCTGACGATGGAGGCCGGCGAGCTGAGGCACCTCGAGGCGCGCCTGGCGCTCGTCGGCGGACGGGTCGTCCTGCGTCAAAACTAACCTGCCGCGGTCTCGCCCCCGCCGCCCTCGCATCATGTCCGGGGGGGCGCGCTCGTTCATCCGGGCTCCAACTGGCATCGGCGGGTGGGGCAGGTGGGGGCGAAGCCGGCAACGGATCTCATTGGACCGCTGATCGTCTGGTCGCTTGCGCGAACCTCAAGCGTGCCGAAAAAGCCCGGCAGGTTCGCGCAAGCAACAACACATTGAAAATTTTGCTCTTTTTTTACGTCATCAGTCTGTTGATGCGGCTGCGGGATGCAGCGCCTCGCAGTTCGCGCCGGAACTCTGGTTTCTTCTGAAAAAACCGCATGATACGAGGAGCCA # Right flank : CGGGGAGCGCCCAAAGGCGCGGCGCCGCGTGATGAGTCGCCCCCCCTCGCGGGGGGGGGGGCGGCGGCTAGCGTTCGTCCGCGCCGCCGCCTGCCTTGCTCGCCTTGCGGATGCGGCTGAAGCTCATGGCGATATGCGCGCGCCGCACATGGGCCGCGGCGGCGAGGTCGCCATGCTCCACCGCCTCGGTGATGTCCGTCACCTCGCGCTGGAAGGTGGTGAACTCGGTATGGATCAGCTCCTCGAAATTCTTCAGCCGTGAGGCCGTCTTCAGCCAGATCCGCGCGGTCTGGTAATACAGACGCTCGCTGATCTCGCGCAGCGGCGCATTGGTCGTCAGCGCGTTGAACAGGTGGAAGAAGTCCATGTTGATCCGCGAGAAGGTGCGCGGATCGCCCTCCGACACCATCTCGTCGCAGCGCGCGCGCATCTCGCGGAAGCGGGCGATCAGCGCCTCGTCGACCGGGATCGGCGACAGCTTGCCGACCAGCTCGGCCAGC # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTTCGCGGGGGCGCGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.90,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //