Array 1 73346-76675 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWLH010000015.1 Providencia rettgeri strain 2021EL-01140 NODE_15_length_114223_cov_51.453241, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 73346 28 100.0 32 ............................ CGCACAAAGTACACTATTATGTACACATCCTA 73406 28 100.0 32 ............................ TTGAAGATAGTGAAGGAGCCTATAACGGTAAG 73466 28 100.0 32 ............................ ACCTGTAGGAATGTATTCAAGCGTGTAAACAC 73526 28 100.0 32 ............................ AGTTCATAGTAGAGTCAGAAAATGAACCCAGT 73586 28 100.0 32 ............................ GTCTAAAATTGCTGCGCGTTCTTCATCTGAGT 73646 28 100.0 32 ............................ GTGCTAGAAATCCACCAGCAATTTTAAGAATA 73706 28 100.0 32 ............................ TTATTAAAATACTCGATGATGTTAGAGAACAT 73766 28 100.0 32 ............................ CAAATCGTATTCTACGACGGTTCTTGGTACAT 73826 28 100.0 32 ............................ GTAAACACAAACGGAAGTGACTATGCTGAGTA 73886 28 100.0 32 ............................ GGTGATTTTAGTAAGCCACAATTAAATAAAGC 73946 28 100.0 32 ............................ CAACTAATTCCGCGCCGTCACCTTCTTTTAAC 74006 28 100.0 32 ............................ TTTATAGATTTGAAAGATGTCATTCTTCCTTA 74066 28 100.0 32 ............................ TCGGTATATGTACCAAGAACCGTCGTAGAATA 74126 28 100.0 32 ............................ TGATAGTTTGGTTTGGGGTAATGGATCTGTGT 74186 28 100.0 32 ............................ CAGTGATAAGCGTGGACAAGCGCAAGCAAACT 74246 28 100.0 32 ............................ TCTTGATGCAAACACATAATCCCCTGGGGTAG 74306 28 100.0 32 ............................ ACATGGGGAAAGTGTAGAGAGAAATTTAGTAA 74366 28 100.0 32 ............................ AAGAACTCTATGAGTTAACGGGTTATGCTAAA 74426 28 100.0 32 ............................ ACCGCAAGCGCTATTTGTGATACTAACTCCTT 74486 28 100.0 32 ............................ ACTGGATCTGAAGGATTATTAGGATTACTTAA 74546 28 100.0 32 ............................ ACCTGATATTTACACCGGTTGGCAGATGGATA 74606 28 100.0 33 ............................ CCCGAAATGGTGGGAAGTCGTATTGCACAGTTT 74667 28 100.0 32 ............................ CATCAAAACCACAGTATGCAAGTTGTCGCTAA 74727 28 100.0 32 ............................ GAACACGAATTTAAAACCATCAATATCAGCTT 74787 28 100.0 32 ............................ TCATAAGTATAAGATATCTGATCAAATGTAAA 74847 28 100.0 32 ............................ GCAGAGCCTGTATAAATCGTCAGTAACTTATC 74907 28 100.0 32 ............................ TGAGCAACATGTTGCTCCAACTCACCTAAGGA 74967 28 100.0 32 ............................ TCATACTCAATTATCGTGAGCATGTTTGATCC 75027 28 100.0 32 ............................ ATTAACCACTTAGGATCTACCATTTAAAAATC 75087 28 100.0 32 ............................ TAATCACTTGTGCCGAATTGACCAGGTATTAA 75147 28 100.0 32 ............................ TCTCATGAATTGCAGGACAATTACCCCTAGCT 75207 28 100.0 32 ............................ TTATTGACTTATCATAGAAAATCTTTGAATTT 75267 28 100.0 32 ............................ ATTTCATCATCGCTATAAACGCTTTGCGACTC 75327 28 100.0 32 ............................ ACTATAGTTTGTCTGTTGTGCAGTTGCTGTAA 75387 28 100.0 32 ............................ TTGATGGTAGTGATGGTGCGTATAACGGTAAA 75447 28 100.0 32 ............................ TGATAGTGTTGAGTCACGCTCTTGAACTACAA 75507 28 100.0 32 ............................ GTAAATCTTACCCGAACGTCAATGCAGCAAAT 75567 28 100.0 33 ............................ AATATACAGTTGAGCTTTTGAGTCCCCTTTTAT 75628 28 100.0 32 ............................ AAATTGCCATTTTTCAGCGTCGTATCTCTACA 75688 28 100.0 32 ............................ TCCTCACGATTCACGCCGAAATGAGCACGTGC 75748 28 100.0 32 ............................ ACTATCGAAGAAATCACACTCTTCATATGCGA 75808 28 100.0 32 ............................ AGCACCTGTGACTTCAATCGTTGGATTATATC 75868 28 100.0 32 ............................ CGATGAAAGAAATCATCACGAATGCGCTGAAG 75928 28 100.0 32 ............................ TGTAGCATTTATCACACAGGAAGCAGCAAACA 75988 28 100.0 32 ............................ TTCAGCGCCAAGCTCACGAGAAACCCCGCATT 76048 28 100.0 32 ............................ CACTTAGAACCGTAACCTCGCTCATGTCGGCT 76108 28 100.0 32 ............................ AATATATTCATCCTCTATTTTCCCAAACCTTA 76168 28 100.0 32 ............................ TTTATTCACAGCATTGGATGCTGAATTCGGTT 76228 28 100.0 32 ............................ TTCACCGCATTTATGCTCATCGAAAGCACAAT 76288 28 100.0 32 ............................ ATTGCCGCTGAAGCTAATTTATCAACGTTTAA 76348 28 100.0 32 ............................ GTAGATTCGGAATGCAAGATTTGGACAGTGAC 76408 28 100.0 32 ............................ TATTAGCGGATTATTCGAGTTCAATACCATCT 76468 28 100.0 32 ............................ AGCCCAACGAGCACCATCAGTATCAACAAAAT 76528 28 100.0 32 ............................ ATTGATGGCTCATGCGGCTTGCCCCACTACCA 76588 28 100.0 32 ............................ AACAGGGGGCGGTAAATAATGGCCAAAGTTAA 76648 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ ================================= ================== 56 28 99.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTGAAGCTAAGCAAGGCTTACAATTACAAGAAATTGATAAATTAGATTTTTTAGCGGATACGCGCTCGATTCAAAATGCGGCCCGCAAAAGTGAGTTGTTAGAAACTAACTGGACTGGCACCACCACAGATTATTATAAAGAAAAAGCGATGTTTGAAGCCTCACAAAGTATTTTTAAAGACTTAAACAGCATGTCACTTTTCGGCAGCCGTTAATTATTTAATATTCTTTTTACTCACCGCGCTTTGGAGCCATTCAAGCGCGGTTTTTTGTTTGGGGATTTTTAGTCACCACAAAAAGGGGATTTGAGTTTATTATTGTGTCTTTTTTATATTGCATAAATTTGCTTTTGTTTTACCCTTATTTGACCTTTCATTTTTGCTCTTTAAAAATCCGCTGATTTAACAATTAGTTATAAGATTCACTAAAAACAAAGGTATTTTTTGTATTTTAAAGCTAGTCAGTTGTTTTTACTTGTTTTATTCTGTTTTTGTTATA # Right flank : AGCGCTATCGATTTTATGTATAAAGATAATCAGGTTTATGACCACAAAGATGGTATTAAAAGAGCATTAGTGAGTGTTTTTTACTGGTCATTCTGTGAAACCCTTCGCAAATTTGGCTTTGGTTGAAAACAAGGACTTGTTTCGTGGGATAAAGCTTATTCTAATAGATTGATTCAAAAATCTTATTATTTAAGGACAGAATCCAACTATTATGGACGATTTTTCACCAAGTGAATTAAAAACTATTTTACATTCGAAACGTGCCAATATGTATTACTTGGAACATTGCCGAGTTATGCAAAAAGACGGCCGTGTTCTTTATTTCACTGAAGCTAAAAACGAAAACCTCTATTTTAATATTCCAATTGCAAATACCACGGTCTTACTTCTGGGCACTGGAACCTCTATTACTCAAGCAGCAATGAGAATGTTATCCCAAGCAGGGGTATTAGTTGGCTTTTGTGGCGGCGGCGGTACACCGCTGTATATGTCTACCGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 85371-85700 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWLH010000015.1 Providencia rettgeri strain 2021EL-01140 NODE_15_length_114223_cov_51.453241, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 85371 28 100.0 32 ............................ GTTTAGTGATGAGCATTCATTTTATAAAGACG 85431 28 100.0 32 ............................ TATCTCAATACAAAGAGCAAGGAATGTTTGCT 85491 28 100.0 32 ............................ CCGAATTATCAGCGGGTTTGCATTTACCAAAA 85551 28 100.0 32 ............................ GTCAGAATCAAGCAAAAATAATCGTTTTGACC 85611 28 96.4 32 .............T.............. TGTTAAACTGTTAGCCCCTAGCGCATCTGTTG 85671 28 78.6 0 ......T...GT......A..AG..... | TA [85691] ========== ====== ====== ====== ============================ ================================ ================== 6 28 95.8 32 GTTCACCGCCACACAGGCGGCTTAGAAA # Left flank : TATTAAATCGATTCAGGCAGTACCAGAGCAGCATGTTCAAGTCAGTTATATTCGAAAGCATGTGAAAGGGCAGAGCCGAATTGACGCTGCTATGCAGCAAAAAGCACGATTGTGGTCTGAAAAATCAGGGCAACCATTGGAACAGTGTTTGAAAACATTGTCTGCGAGTAAGCCAAAAGCGAACAATCGTTTGCCATTTATTTGGGTTGAAAGTTTACATGCCAGAGATAAGCAAGTCGAAAGCCGGCCTTTTCCTTTGTTTATTGAAAGGATAGAAGCTACACAAAAGCAAATTGGGGTGTTTAGTTGCTATGGTCTTAGTCAAGCAACTAGTGGCTCAGTTTGTTTAGCAACGGTTCCCCATTTTTGACCTTTGTTTTTTGCTCTTTTAAAATTAGTCAATAAATCAGTAGGTTATAATCATCAGTAAATAAAAGGGTATTTTCCAATAAATACCCTTAACTGATTGTTATCACTTATTTTTTATTTTAAAGTGCATC # Right flank : ACTGATCTATTTACTGCAGTCGGTATGTAGTACAGACGATACAATGGAATGTGATTTGCACTAAAAAGCAATTTGCATTACAGTGCAAATTATGATGAGGGTATATGTATACTGTAAAATATCATTCTGAGGCTGAAAAAGAAGCAAATGCACTGCCTTTAAAAATCAAGGTGAAATATGACCGCCTCATTAAAAAATTAGAGTTATCAGCTAATTATTTAAGAGAACCAGATACTAAATCATTGGGCGATGGATTGTTTGAGATAAGAACTATGGGAAGTGAAATAGCTAGGGGGTTATGGGTTTACCACAAAGATAAAACAATTTTTATGCTCAGGATCTTTATCAAAAAGTCACAAAGAACCCCAAAGTCTGAGTTTTATTTAGCGAGAAAACGTTTATTGGAGCTATTAAACGATGAAAACACATAAAGAGCTACATGATGAATGGATGAAAGATCCAGAATACCAAGCTGCTTATGAAGAAGAAATAAGAACTGA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCACACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //