Array 1 171649-173508 **** Predicted by CRISPRDetect 2.4 *** >NZ_NROH01000049.1 Cronobacter dublinensis strain cro3314A3-1 contig49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171649 29 100.0 32 ............................. CACTTACGGTGGCCCGGTCGCTGATATGCCGC 171710 29 100.0 32 ............................. AAACCTTCAGCGCTACCGCCGGATATTTTTTC 171771 29 100.0 32 ............................. CGCGCCGCATCACGTGCAGGACACGTAAAACT 171832 29 100.0 32 ............................. ACTGACACAGCAAAACTGAAAGCGGCGGCTGA 171893 29 100.0 32 ............................. AAAATTGAAGAGCATACACCGCAATTTATACT 171954 29 100.0 32 ............................. CCATTGAAAACTGTGGCTGCTCTCCGCCACGG 172015 29 100.0 32 ............................. GTCGCATTCGGGGCAGGCGCACTCACGATCCG 172076 29 100.0 32 ............................. GGCTGTTTTCGTTTTATCCGGCGTAACCGGAT 172137 29 100.0 32 ............................. GATGAGGAAACCTGGATGACAGGCGCTGAAGC 172198 29 100.0 32 ............................. ACTGGCGGCCACGTGCGCAAGACCAGTAAGCG 172259 29 100.0 32 ............................. TAGACTGTGTCTGCATATCCACCGGCACGGCG 172320 29 100.0 32 ............................. AGATCACTGCCGAGGAAAATATTTAGTTTTCC 172381 29 100.0 32 ............................. CAGGGGGCGAAAATCGCCCGTTCTGGCTGGAA 172442 29 100.0 32 ............................. CGCGCATCAGGAAATCACAAACCAGCTCTACA 172503 29 100.0 32 ............................. ACCTCGGCGGGCAGCACGTCGGGTATCTCGGT 172564 29 100.0 32 ............................. CATTTTGCAGTAGTTAACTACAGCGCGGACAA 172625 29 100.0 32 ............................. TTAACCTGGCGCGCGAGCGCGCTGGCGCTGAA 172686 29 100.0 32 ............................. GCGGGTTATTTACTGGGAAATGAATAAGGAAA 172747 29 100.0 32 ............................. GCAACGGCTCATTCTCTTGGGGTCGAACCATT 172808 29 100.0 32 ............................. TATGAGGCGGGATATATTTCATATTTTCTGTG 172869 29 96.6 33 A............................ TGACCAGTGGCGGACGCTTTGACCATCTCTGGA 172931 29 100.0 32 ............................. CCACCGTTGTGACCGTACCAATGGACAGTGAG 172992 29 100.0 32 ............................. TGCAGTGAGCGGATGCCGCCTGAATGCACCAT 173053 29 100.0 32 ............................. ACGGCACAAATAAACAACTCGACTGGCAACTA 173114 29 100.0 32 ............................. CAAAAGAGTTATTGTTTAATAGTCAGCACGCC 173175 29 100.0 32 ............................. CTCAGGCTTTGCGCCTCAAGCGCTTCGGTGTA 173236 29 100.0 32 ............................. CGTTCTCAACCGGGGACAGTCTTTTGTTAAGG 173297 29 100.0 32 ............................. CGCACCACACTTCGCCGTCTTCTTTGGTTGCC 173358 29 100.0 32 ............................. GCGGCTCAGGGAGCGGTTGCCAGTGGGTAGCC 173419 29 100.0 32 ............................. CGATCTGTCCCGCGCGGATTTTGAGGGTATTT 173480 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGAAAGCTTTAAATGGATGATGGCGCACAACATCGCCTTTATTGTCGTCAATATCAACATCAACTATCGCCGTCCTGCGGTGCTTGGCGACGTGCTGACCATCACCAGCGAGATGAAACAGCTCAATGGCAGAAGCGGGGTGCTGAGCCAGGTGATTACGCTTGGACCCGAAGACGAGGTGGTCGCCGACGCGCTCATCACGTTTGTTTGTGTCGATCTTAAAACCCAGAAAGCGCTGCCGATTGAAGGCGAACTGCGCGAAAAACTGGAAAATATCACAGGGTAAATTCTGCAATCACGCTGCCTGTGCGTGTAGTCATGGACTTCCACTCACCGAAAGCGAACAATCCGGTAGATGTTATCGGCCCGAAAGCACGCTGAAAAAAGGCTTTTAAAATCAACAGGGCAGCCGCTCTTTAACAAGATGGCTTGTGAAGTAAATGTTGGTAGAATGTTGGGGTCGATAAAAGTTCAAAGAAAACAACAGGTTGTTTTTAGA # Right flank : GAACCCGTTTGCCGCGGCGCAAAAAACTCATCTCTGTCACTCGTTCCAGCCCGAATATCCAGCTTAACCACCCGCCAGGGCAACCCCTCCCAAACCCCATATTCTTCAGTGGCGTTTATACTTCAAAGCCAACATGAAATTTCGCAACACTGCGCAACGAAGGAGAGGCTATGCGGGTACACCATCTTAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTATGACGGCTTCAGCAAAGGGTTGCACGCGCATCTGATTTGCCACTGTCTGCTGATTGAAACCCAAAATAACGGACTGGTGCTGGTGGATACCGGCTTCGGCTGCGACGATATGCGCCACCCTGGCCGTCGTTTGCCCCTCTTTTTCCGGGCGCTGAATAACATTCAGTACCGCGAATCATTAACAGCGCTGCATCATATTAAGGGGCTCGGTTTTAAGCCGGAGGATGTACGGCACATTGTACTGACGCATCTGGATTTCGATCATGCGGGCGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 199722-201401 **** Predicted by CRISPRDetect 2.4 *** >NZ_NROH01000049.1 Cronobacter dublinensis strain cro3314A3-1 contig49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 199722 29 100.0 32 ............................. CTCATCAACCTGGTGTGCAACGTCCTGTACGT 199783 29 100.0 32 ............................. TTGGACATTGTGCTGCCGACAGCAGGCATTGA 199844 29 100.0 33 ............................. GCAGCCAGGAGGCCGATAATTCCGCTTGATAGC 199906 29 100.0 32 ............................. ATCGTAATCGTCGGCCAGCGATTTAGCGCCCT 199967 29 100.0 32 ............................. CACGTGCATTTCGCGTGCATTTTTTTGTCTTA 200028 29 100.0 32 ............................. CTACGCGAGAAAATAACAAACACCGCCCGTAA 200089 29 100.0 32 ............................. TGATCGGCCTCGACAGAACGGTGCATTATAAA 200150 29 100.0 32 ............................. TAAATCCACCCGAGCACCGCTAAACCCGTCTG 200211 29 96.6 32 ............................A TTACCTCACCAAAAAGATGCCCGTAAATATCC 200272 29 100.0 32 ............................. AATCCTATTGTTCTTGGTATCCTGGCCGCTGC 200333 29 100.0 32 ............................. CCTTCGCACAGCCACGCCGTATCCGTACCGGT 200394 29 100.0 32 ............................. GCATACCGCGTTTTCACTGCCTTCGACATTTT 200455 29 100.0 32 ............................. TGTTCCCCCCGCTGGCGGGGATAACCGTTATT 200516 29 100.0 32 ............................. GTGGTGGTCGGGGTTGCTGTCGCGCAGCCGAA 200577 29 100.0 32 ............................. CGCACCTACCTGTGTTGCGTACACAGCATCAG 200638 29 100.0 32 ............................. TAAAATTTTGTTTCCTGATTATACGCCATTGC 200699 29 100.0 32 ............................. AGCCCGCTCTTGAGCGGGGCGAGTGAGTGTTA 200760 29 100.0 32 ............................. GATAATGTAAACGGAGCTATTGAGCTGGCTAA 200821 29 100.0 33 ............................. GAACTCGGCGCCGAAACCCCCGGACGATCCGCC 200883 29 100.0 32 ............................. CGCTGCGCGAGCGCGTGCCCGATTTCGGCGGG 200944 29 100.0 32 ............................. AGGTTTGCGAGGACGATCTTTAGAGTTAGCGG 201005 29 100.0 33 ............................. GGCAAAGCGACAGCCAGTGACTGCACCAAAACC 201067 29 100.0 32 ............................. TCTCAATCATTTATACGTCTGTCAGAAGTTCA 201128 29 100.0 32 ............................. GTCTGAACATCCAGGTCGGTTATCTCGATTTC 201189 29 100.0 32 ............................. GCGAGCGAAGAAGACCCCGCCCGTCCGCTGAA 201250 29 100.0 33 ............................. GGAATCGCACGCCGTGCGAATTGCCGAGGCGCA 201312 29 100.0 32 ............................. CAATGAGACTGACCCTGAACGACGTCAAAGAA 201373 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.8 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GAGGTGCTGGCGGCGGGCGACATCGAACCGCCGCAACCCGCGGCGGATATGCTGCCGCCCGCTATTCCACTGGCGGATTCGCTCGCCGAAGCGGGCTTCAGGAGCCGCTAATGAGCATGCTGATGGTTGTCACCGAAAACGTGCCGCCGAGACTGCGCGGGCGGCTCGCCATCTGGCTGCTTGAACTGCGCGCCGGGGTTTATGTTGGCGACGTCTCGAAGCGGGTACGTGAAATGATCTGGCATCAGATAACCGAGCTCGCGGAAGAGGGCAATGTCGTGATGGCCTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTATGGCGTTAACCGACGCATTCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCATTTTTACCTCTTCAGAATCAGTAGGTTAACTGCTCTTTAAAAATGTGGGGATCTAATAAAAAGGTTGGTAGATTGTTGGATGTGAAAAATTTCCTTATAGAACAGTTGTATAGCTTTAGA # Right flank : GGCCATGCATGCATTTATGATGGGCAAATTTGGATAAGCGATTTTCGACAAAAATCGCTCTACCCCGGAGAGAGTTATCGAAAAGCACAACCAGCTTTTAAACTATACAGGCATTACTGAGATGAATAAGAAAAACCTTTTGCTGGCTATTCCAGCGTTATATTGTTTTTGCGTGTTAGCCGGGGATGACACTCCCGGGCAACAGCCGCAACAGGCCGCGCTCAAATTCAACCAGTGGTATATAAAACACTTCAACGATTCGGATGACAATCTGCTTAACAGTAAAGAAATCGAAATCTACGGGGCGAAAGAGACGCTGGAAACGTTACGACACGCGAGAAATAACGATGATGAATTTTATGATGCCGACTTTTTTATAAAAGCGCAGGACATCATGCCTGACTGGCCAACCCATACGGTAGTAACCGGCGCAGAATACGATCCCGTTTGTACTCAGGTGTACGTCTCATTCGGCCAGCATCAGACGCATGGCGTGATTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //