Array 1 8105291-8101166 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039123.1 Streptomyces sp. SS52 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================= ================== 8105290 28 92.9 33 .............CC............. CGCGGCCGAGGTCATGCTCGCGTTCGGCGTGCC 8105229 28 92.9 33 .............CC............. CCAGGCCGACACACCCGCCCGCTCGAGCACCCA 8105168 27 85.7 33 .............CC..-.....T.... CGGGCACTCAGGGAGCGGCTGCAGCTGCCGGAC 8105108 26 82.1 33 ........--..A.G........T.... CCATTTGTGTGAACGAGGCGTCACAGTAGGCAC 8105049 28 92.9 33 .............C.........T.... TCGCGGCGTGCAGACGTCGATGTTCCCCTCGGT 8104988 28 89.3 33 .............C.......A.T.... GCGTCCGGCGAGCATCGCCCTACCTGGCTGCCA 8104927 28 78.6 29 ...........TGCC.....A......T CCTGATCGGGCGACGCTGGCCGCGTGCTG 8104870 28 82.1 32 ..G.....T..A.TC............. CACGGAGACACCCTGATCCACAGGGTGCTGCG G [8104865] 8104809 28 92.9 32 .............C....A......... CGCGAGGCGGGACAGCTCGCGCATCGCGGCGG 8104749 28 89.3 32 ...........A.CC............. CCGACTACCGCCGCCCTCGGGCGGCATGGAGG T [8104748] 8104688 28 67.9 63 ...........A.CC..A..AA.GC..T GCGGGTCGAAACGAGGTGAAGGAAAACAGATACCCTTGCTCACATCTCCGCAGCTCACGAAGT C [8104687] 8104596 28 100.0 33 ............................ GTTCGATGACCAGATGAACGCGCAGTACCCGGG 8104535 28 100.0 33 ............................ CGGCATCAGGTCGGTCATCGCCCTGGCCTGGGA 8104474 28 100.0 33 ............................ CCCGCGGTAGTCCACGGCGTCGGTGATGCCGGG 8104413 28 100.0 33 ............................ CAGACGCGCGGGCAGCTGGCCCCGGGACAGGCC 8104352 28 100.0 33 ............................ CCGAGACCGGTCCACCGGCGCGCCCTCGTCGGC 8104291 28 96.4 33 ...............A............ CCGGGCCGTGGACCGCAGGTCGCGCGGCGCGTA 8104230 28 96.4 33 ..............C............. CATCGACGGCTGCCGTACCGAGGCAGGGCAGGA 8104169 28 100.0 33 ............................ CGTCCAGATGGGGGGCGGGGTGATCAACGCCGA 8104108 28 96.4 33 ...............A............ CCGGCAGATCCGGGAGATCTCCACCCAGGTCTC 8104047 28 96.4 33 ...............A............ CGAGGTGCGCGTGATGTTGGACGACTTGAGCCC 8103986 28 100.0 33 ............................ GCACGGTACGGCGACCGTCGCGCAGGACGGGAC 8103925 28 100.0 33 ............................ GCCCTGGCTGGGCAGGGGCGCGAAGCCCAAGTT G [8103915] 8103863 28 100.0 33 ............................ CCCACCGCGAGTACGCCTACCGGGCTCGCCGCG 8103802 28 96.4 33 ........................A... GAGGCCATGGGCGGCGTCCAGTGGCGGAGCATC 8103741 28 82.1 30 .............C......T.CTC... GATCACGTTGATTGTGATCGCACTGGTGGC 8103683 28 75.0 33 ...A........TCC..A.....T.T.. CGGCGAGTCCGCGTTCCGCGTCGGCATCACCAA 8103622 28 89.3 33 .......T.....CC............. CTGGACCCTCCGCACCGTCACCGACGCCCTCGC G [8103605] 8103560 28 92.9 32 .............CC............. CCGTCCTCCGAGGGGTCCAGGCCCTTGTTGGA 8103499 26 89.3 33 ...........C.--............. TCCGTCCTCGAAGGCCTGCGTGATGATCGATGC 8103440 28 89.3 33 .............CC.....A....... CGTTCACTTCCCATACGGTGACGGTCCGGCCGA 8103379 28 89.3 33 .............CC........T.... CGCAGTGGGGCCGCACCGTTCAGGGGCAGGTGC 8103318 28 89.3 30 .............CC........T.... CTACTACCACGCAGACAACGCCCCGGGCGG 8103260 28 92.9 33 .............C.........T.... CGTGCCGCCATCGGTAGTGATCCACCCCAGGCA CTG [8103252] 8103196 28 89.3 33 .............CC........T.... TGCCCCGTGGGCAAGGCAGAGTAGACACAGTCA 8103135 28 89.3 33 .............CC........T.... TTGGGGATCGGCGCCGTGACGGATAATCAGGTG 8103074 28 85.7 33 ........T.....C..A.....T.... CCCTGGCGGGCCGATGTGGCGATGCCGTCGCAT C [8103060] 8103012 28 89.3 33 .............CC........T.... CCTCGTGCCTCCGGATCACCACGGCCTGGTCGG C [8103000] 8102950 28 92.9 33 .............TC............. CCCGGACTGGTGGCGATTCGGTGACCGCCCTGA 8102889 28 89.3 48 .C.........A.C.............. TCCACGGCAGGCGAAACCGTCATCACCTTCAGGTCGTCCCCACAAGGG 8102813 28 50.0 78 AG.AA......AG.G.T....ACGA.CA GACGACGTTGACGTTCTCCAGCGGGTCTCCGGGAGCTACCCGCGGGGCGCGATCCGGAGCCGGATCGCGGAAAACCCG 8102707 28 89.3 33 .............C.......A.C.... CCCGTACTCCTTCGGAGAGACGTGGCTCAACCC 8102646 28 85.7 33 ............TTC........T.... CTGCCACAGGGACAGGATGAGGCCGCACAGGGC T [8102629] 8102584 28 96.4 33 ................T........... CAGCACGGCCGCCGGCGGCAGCAGCACCGGCGG 8102523 26 92.9 33 ........--.................. GCGGTAGAGCGCGCGGTCCGTATCGCGGTCGTG 8102464 28 92.9 21 .............CC............. CACGGGCACCCCGTGGAAGAC Deletion [8102416] 8102415 28 89.3 33 ..........A..CC............. CTGCTCCAGGCGCGCGCCGGCGTTGTCGCTGTG 8102354 28 89.3 33 ..........A..CC............. GACCTGGGACACGAAGACCCTCGCCCATCTCGT 8102293 28 89.3 33 .............CC...........G. CTGCTTCAGGTCAAACGCGACCTGCTCCATACC 8102232 27 85.7 21 ...........-.CC..........T.. CGGCCTCCGCCCCGGCCACTG Deletion [8102185] 8102184 28 85.7 22 ......T..A...CC............. CTGCCGACGTCGGCGGGAGCTT Deletion [8102135] 8102134 28 89.3 21 .............C.A.......T.... CGCTGAAAGTGGTGGCCTCGA Deletion [8102086] 8102073 28 89.3 0 ...........A.CC............. - Deletion [8102046] 8102070 25 78.6 89 ---........A.CC............. CGCGGCGCGCAGCTTCTCTACCGTGGCCTCGCCGTCGCCCCTACAGGGGGTAGCTCGTCGTCCGGCCACACCGCCGGCATAGTCTAGGC 8101956 28 89.3 32 .............C..T......T.... GTCCGCAACGGACGGCGGCCGTTTGCCCTTGG T [8101934] 8101895 28 85.7 31 ......T......C.........T..C. GCTGGCGCGCCGAGCACGGGGCCACGGCGCC A [8101894] 8101833 27 75.0 33 T........-....CT.C....GG.... TGGCGGAGGGTCCGGATCGGCGGCGGGTTCGCG 8101773 28 82.1 33 ..GC.........TC........C.... CCGGGCCCGGCCGCGGGCGAAGACGACGCCACC 8101712 27 85.7 33 .............TC..-........C. GACGCCTTCGGGTGCCCGCTGCTGGATGGCGAG 8101652 28 75.0 33 ........T..A.CGCA....A...... CACGGTCCAGTACTGGGACAAACAGACGTACAC A [8101648] 8101590 27 75.0 64 ...........A.CC..-.....GC..T GCGGGGCCGTAACGAGGTGAAGGAAAACGGATACCCTTGCTCACATCTCCGCAGCTCACGAAGT 8101499 28 100.0 33 ............................ CTCGACGAGCCGTACGGCAAGGCGTACGTCGCC 8101438 28 100.0 33 ............................ CTTCGACCGCCTGTTCGCCAAGGCAGGGCTGGA 8101377 28 92.9 30 .............CC............. CTACTACCACGCAGAGACCGAGCCGGGCGG 8101319 28 96.4 33 .............C.............. CTTGTTCGAGGGCCGGATCTTGAGCCGTTCTGG CTG [8101311] 8101255 28 85.7 34 .......T.....TG.....A....... TCGATACGGAGGGGCGCAGCGGGGGACTACTCGC 8101193 28 75.0 0 .C...........CC.TC...A.T.... | ========== ====== ====== ====== ============================ ========================================================================================= ================== 67 28 89.2 34 GTCGTCCCCGCGCGTGCGGGGGTAGCTC # Left flank : CCGCCGGCAGCCGCCCCCACGTCAGACCCGCCGCCAGCACCGGTGCGGCCTCGGCCGCATCCATGGCTTGAAACGCCGGGCACGCCTTACCGCAGTCGTGGATGCCGCACACCCACATGAACCACGACCGCCCTCGACCCCCGCTGACCTCATCCAGCCGCCGCCGGAACGCAGCCGACACGTACTGGTCCCACATCACCCCAGCCACAGCAGCCGTATCCAGCAGGTGCCCCAGCAGCAGATGCGTCCGCCCACCATTACGCGCAGCTGACTTCCCCCACAACCGCGACACCCGCGTGACGACCTCATCGGCCAGGCCCATCGACCGCATCACCTCAACGACCGACCGCTCATCCTCCACGCCCACCCCCTGAAGACTCGGCTGCTCGCAGCCAGTTGGTGCCGGCACTGTAAACGGAGCCACTGACAATGCCTCCCGGGGCCGAAACGAGGCGAAGGAAAACAGATACCCTTGCTCACATCTCGGCAGCTCACGAAGT # Right flank : CTCCTCCCGGTCCACCCTCCGGACTTCTCGCCGCCGCTCATGCCTGACTCCAGGTGGTGTAGCCGAGGTCCAGGTGCCCAAGGCTGGCCAGGCGCTGCACTTGGGCGACGAACGCCCGAGTGAACAGGCGCTGCGCCGACAGCTCGCCGTACCGGTCGATGTGGTCGAACACCAGCTGGTGGTCGGCGGCAGCGCGGTTGCGCCACTCCAGGACCTGCTCCCGGGTGAGTTCCTCGAGGACCAGCTCCTGATCGTCGTCGATGTCGGCGGTCGGGCGCGGCGCGGGCAGCACGACCGGGGCCACCGGCTCGTCCGCGACGACATCGGCCGACTGCGCGGCTGTGGCTTCGGCGCGGGCCTTGGCGGCGGCCTGCCGGGCGCGGGCCTGCTCCCACTCACGTGCCTTCGCCCAGGCCTAGGCGGTCACCTGCCCGTGCAACTGCCGGTCTGCGGCCGCGCGGCGCTCCGCCTCGGAGGCTCCGGGCACCGCGGCGTCGACC # Questionable array : NO Score: 4.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:0, 6:0.25, 7:-0.23, 8:1, 9:0.20, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCGTGCGGGGGTAGCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCCTGCGGGGGTTGCTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [93-48] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 8115797-8116191 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039123.1 Streptomyces sp. SS52 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8115797 29 96.6 32 ............................G AGCAACGGGCCGGAGTTCGCACCTCCGACCCG 8115858 29 96.6 32 ...C......................... GGCCAGTTCCGGGTCATCACCTCGGTGACGGA 8115919 29 96.6 32 ............................T TTGTCCTTCAGGGTGTTCGCCCAGCCCGGGAC 8115980 29 93.1 32 ..T.........................G AGCACCCACGCGACGACCGAGGTGTCGGTCGC 8116041 29 96.6 32 ..............T.............. TGGTCTCCATGATCCCGGTCTCTGGCTCGTCC 8116102 29 100.0 32 ............................. ACCACCTCGCGGAACTGGCGGATGCGGGCCTT 8116163 29 96.6 0 .................C........... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.6 32 GTCGTCCCCGCGCCCGCGGGGGTAGCTCC # Left flank : CGACGGTGACCTGCCGGACGAAGACCTCGGCGCTCTGTGGGATGACGGCGACAGCATGGTCAGCGGCGGCCGCAACTGGAGCGCCACGCACCACCTCGACATCATCCCTGAGCCCACCCCTGCGGAGCCGGCCCCGTGAGCGCCGGGACGACCGTAGTCGTTCTGATCGCGGCCCCGCCTGGGCTCCGGGGGCACCTCACCCGCTGGTTCGTCGAAGTGGCCGCCGGCGTCTATGTCGGCAATCCGAACCCTCGCATTCGCGACCGCCCTTGGACCCTCCTTGCCGAACGCATCCACGACGGCCAAGCCGTCATGATCGAACCGGCGGACACGGAACAGGGCTGGACGGCCCGAACTGCCGGCCGCGACCGCTGGACCCCCATCGACTTCGACGGCCTGACCCTCATAGCCCGTCCACGTCAGAACGGACAGCCCTGGCGCCCCGCAAACGAGGTAAAGCAAAAAGGCATGATCAGCTGATAAAACCCAGGTCACGAAGT # Right flank : CTCCTCGGACGCCATGGTCGCCACGTTCGGATGATCCTCGTACACGACGTAGGCCACCGCCCCGTGTTGGGTGGGGGCCTTGAGTCACAGTGATCGCGCAAGCGCAGCGCAACAGCGAAGCCCTTCGCGGGTCTACAGGCGGGACGCCGGTGTACTCCCGACGTCCCTGGCCCCCTCCCCGTTTTACAGGCCCAGCCACGCCAAGAGGACCTTGGCGAGTACAGCCGCCGTCACACTTGAGCTGACCTGAACGAGACCACGCAGCAGGTGGGCACGCATCTTCTTGCGGGTGTTCTTCAAAGGGATTCCCTTCTCAAACCGGCCCGCCCCACCGTGCGTCGGGGGCGACTCCGCCGCGGCAGACCGCGGCGCGCTGCGTCCCCGTTCGCATGGCTGGGCGGATGAAGCTTGGGAAAGGGCCTGCCGGAACATTACCGTCCCCGCACGGGCCGGCGGGAGCCGTTTATGGAAGCCCCCGGCCCAACCCGCCGCAGCAACCG # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCCGCGGGGGTAGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCCGCGGGGGTAGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //